Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01469

Experiment: polygalacturonic 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01468 and BACOVA_01469 are separated by 169 nucleotidesBACOVA_01469 and BACOVA_01470 are separated by 44 nucleotidesBACOVA_01470 and BACOVA_01471 are separated by 4 nucleotides BACOVA_01468: BACOVA_01468 - nicotinate phosphoribosyltransferase, at 125,730 to 126,905 _01468 BACOVA_01469: BACOVA_01469 - hypothetical protein, at 127,075 to 127,605 _01469 BACOVA_01470: BACOVA_01470 - hypothetical protein, at 127,650 to 128,375 _01470 BACOVA_01471: BACOVA_01471 - transcriptional regulator, TetR family, at 128,380 to 128,985 _01471 Position (kb) 127 128Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 126.137 kb on + strand, within BACOVA_01468at 126.155 kb on + strand, within BACOVA_01468at 126.155 kb on + strand, within BACOVA_01468at 126.155 kb on + strand, within BACOVA_01468at 126.156 kb on - strand, within BACOVA_01468at 126.161 kb on + strand, within BACOVA_01468at 126.176 kb on + strand, within BACOVA_01468at 126.176 kb on + strand, within BACOVA_01468at 126.193 kb on + strand, within BACOVA_01468at 126.221 kb on + strand, within BACOVA_01468at 126.222 kb on - strand, within BACOVA_01468at 126.223 kb on + strand, within BACOVA_01468at 126.223 kb on + strand, within BACOVA_01468at 126.223 kb on + strand, within BACOVA_01468at 126.224 kb on - strand, within BACOVA_01468at 126.224 kb on - strand, within BACOVA_01468at 126.236 kb on + strand, within BACOVA_01468at 126.263 kb on + strand, within BACOVA_01468at 126.263 kb on + strand, within BACOVA_01468at 126.263 kb on + strand, within BACOVA_01468at 126.320 kb on + strand, within BACOVA_01468at 126.343 kb on + strand, within BACOVA_01468at 126.344 kb on - strand, within BACOVA_01468at 126.454 kb on - strand, within BACOVA_01468at 126.495 kb on + strand, within BACOVA_01468at 126.495 kb on + strand, within BACOVA_01468at 126.495 kb on + strand, within BACOVA_01468at 126.496 kb on - strand, within BACOVA_01468at 126.533 kb on + strand, within BACOVA_01468at 126.566 kb on + strand, within BACOVA_01468at 126.567 kb on - strand, within BACOVA_01468at 126.630 kb on - strand, within BACOVA_01468at 126.783 kb on - strand, within BACOVA_01468at 126.785 kb on - strand, within BACOVA_01468at 126.830 kb on - strandat 126.848 kb on - strandat 126.853 kb on + strandat 126.863 kb on + strandat 126.869 kb on + strandat 126.870 kb on - strandat 126.886 kb on - strandat 126.888 kb on + strandat 126.897 kb on - strandat 126.922 kb on - strandat 126.927 kb on - strandat 126.928 kb on + strandat 126.960 kb on - strandat 126.960 kb on - strandat 126.969 kb on + strandat 126.969 kb on + strandat 126.969 kb on + strandat 126.970 kb on - strandat 126.970 kb on - strandat 126.976 kb on + strandat 126.983 kb on + strandat 127.025 kb on + strandat 127.026 kb on - strandat 127.027 kb on + strandat 127.027 kb on + strandat 127.027 kb on + strandat 127.028 kb on - strandat 127.028 kb on - strandat 127.028 kb on - strandat 127.029 kb on + strandat 127.030 kb on - strandat 127.056 kb on - strandat 127.062 kb on + strandat 127.066 kb on - strandat 127.068 kb on - strandat 127.071 kb on + strandat 127.071 kb on + strandat 127.072 kb on - strandat 127.072 kb on - strandat 127.072 kb on - strandat 127.072 kb on - strandat 127.080 kb on - strandat 127.102 kb on - strandat 127.129 kb on - strand, within BACOVA_01469at 127.230 kb on + strand, within BACOVA_01469at 127.259 kb on + strand, within BACOVA_01469at 127.345 kb on + strand, within BACOVA_01469at 127.345 kb on + strand, within BACOVA_01469at 127.345 kb on + strand, within BACOVA_01469at 127.346 kb on - strand, within BACOVA_01469at 127.349 kb on + strand, within BACOVA_01469at 127.350 kb on - strand, within BACOVA_01469at 127.367 kb on + strand, within BACOVA_01469at 127.475 kb on + strand, within BACOVA_01469at 127.476 kb on - strand, within BACOVA_01469at 127.476 kb on - strand, within BACOVA_01469at 127.510 kb on - strand, within BACOVA_01469at 127.511 kb on + strand, within BACOVA_01469at 127.511 kb on + strand, within BACOVA_01469at 127.511 kb on + strand, within BACOVA_01469at 127.511 kb on + strand, within BACOVA_01469at 127.511 kb on + strand, within BACOVA_01469at 127.511 kb on + strand, within BACOVA_01469at 127.512 kb on - strand, within BACOVA_01469at 127.512 kb on - strand, within BACOVA_01469at 127.512 kb on - strand, within BACOVA_01469at 127.512 kb on - strand, within BACOVA_01469at 127.515 kb on + strand, within BACOVA_01469at 127.515 kb on + strand, within BACOVA_01469at 127.515 kb on + strand, within BACOVA_01469at 127.516 kb on - strand, within BACOVA_01469at 127.593 kb on + strandat 127.605 kb on + strandat 127.605 kb on + strandat 127.632 kb on + strandat 127.645 kb on + strandat 127.651 kb on + strandat 127.652 kb on - strandat 127.652 kb on - strandat 127.660 kb on + strandat 127.671 kb on - strandat 127.676 kb on + strandat 127.719 kb on - strandat 127.730 kb on + strand, within BACOVA_01470at 127.730 kb on + strand, within BACOVA_01470at 127.730 kb on + strand, within BACOVA_01470at 127.770 kb on - strand, within BACOVA_01470at 127.852 kb on + strand, within BACOVA_01470at 127.853 kb on - strand, within BACOVA_01470at 127.988 kb on + strand, within BACOVA_01470at 128.036 kb on - strand, within BACOVA_01470at 128.036 kb on - strand, within BACOVA_01470at 128.036 kb on - strand, within BACOVA_01470at 128.037 kb on + strand, within BACOVA_01470at 128.038 kb on - strand, within BACOVA_01470at 128.038 kb on - strand, within BACOVA_01470at 128.050 kb on + strand, within BACOVA_01470at 128.150 kb on - strand, within BACOVA_01470at 128.165 kb on - strand, within BACOVA_01470at 128.178 kb on - strand, within BACOVA_01470at 128.275 kb on - strand, within BACOVA_01470at 128.279 kb on + strand, within BACOVA_01470at 128.288 kb on + strand, within BACOVA_01470at 128.301 kb on + strand, within BACOVA_01470at 128.325 kb on - strandat 128.358 kb on + strandat 128.382 kb on - strandat 128.474 kb on + strand, within BACOVA_01471at 128.507 kb on + strand, within BACOVA_01471

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic 2.5 mg/ml (C)
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126,137 + BACOVA_01468 0.35 -0.0
126,155 + BACOVA_01468 0.36 +0.3
126,155 + BACOVA_01468 0.36 +0.1
126,155 + BACOVA_01468 0.36 -0.9
126,156 - BACOVA_01468 0.36 +0.1
126,161 + BACOVA_01468 0.37 +1.1
126,176 + BACOVA_01468 0.38 +0.1
126,176 + BACOVA_01468 0.38 -0.8
126,193 + BACOVA_01468 0.39 -1.2
126,221 + BACOVA_01468 0.42 -0.0
126,222 - BACOVA_01468 0.42 +0.1
126,223 + BACOVA_01468 0.42 -0.3
126,223 + BACOVA_01468 0.42 +1.8
126,223 + BACOVA_01468 0.42 -0.9
126,224 - BACOVA_01468 0.42 -0.1
126,224 - BACOVA_01468 0.42 +0.3
126,236 + BACOVA_01468 0.43 +0.1
126,263 + BACOVA_01468 0.45 +0.3
126,263 + BACOVA_01468 0.45 -0.1
126,263 + BACOVA_01468 0.45 -0.5
126,320 + BACOVA_01468 0.50 +0.2
126,343 + BACOVA_01468 0.52 -0.9
126,344 - BACOVA_01468 0.52 -0.3
126,454 - BACOVA_01468 0.62 -3.8
126,495 + BACOVA_01468 0.65 -1.5
126,495 + BACOVA_01468 0.65 -1.9
126,495 + BACOVA_01468 0.65 -0.5
126,496 - BACOVA_01468 0.65 +0.1
126,533 + BACOVA_01468 0.68 -0.1
126,566 + BACOVA_01468 0.71 -0.2
126,567 - BACOVA_01468 0.71 +0.6
126,630 - BACOVA_01468 0.77 -1.3
126,783 - BACOVA_01468 0.90 -0.1
126,785 - BACOVA_01468 0.90 -3.1
126,830 - -1.3
126,848 - -0.3
126,853 + -0.5
126,863 + -0.4
126,869 + -0.3
126,870 - +1.2
126,886 - +0.6
126,888 + -0.7
126,897 - -0.1
126,922 - +0.4
126,927 - -0.6
126,928 + -1.5
126,960 - +0.7
126,960 - +0.7
126,969 + -0.5
126,969 + -0.7
126,969 + -0.4
126,970 - -0.4
126,970 - -0.1
126,976 + +1.6
126,983 + +0.1
127,025 + -0.0
127,026 - +0.5
127,027 + +1.1
127,027 + -1.1
127,027 + -0.5
127,028 - -1.3
127,028 - -0.9
127,028 - +0.1
127,029 + -0.8
127,030 - -0.9
127,056 - -1.0
127,062 + -0.4
127,066 - -0.6
127,068 - -1.2
127,071 + +0.1
127,071 + -0.3
127,072 - +2.6
127,072 - +1.5
127,072 - +0.1
127,072 - +1.1
127,080 - +0.7
127,102 - +0.1
127,129 - BACOVA_01469 0.10 +0.3
127,230 + BACOVA_01469 0.29 +0.5
127,259 + BACOVA_01469 0.35 +1.1
127,345 + BACOVA_01469 0.51 +0.1
127,345 + BACOVA_01469 0.51 -0.5
127,345 + BACOVA_01469 0.51 +0.3
127,346 - BACOVA_01469 0.51 +0.6
127,349 + BACOVA_01469 0.52 +0.9
127,350 - BACOVA_01469 0.52 +0.6
127,367 + BACOVA_01469 0.55 -0.7
127,475 + BACOVA_01469 0.75 +0.1
127,476 - BACOVA_01469 0.76 -0.5
127,476 - BACOVA_01469 0.76 -2.1
127,510 - BACOVA_01469 0.82 -1.2
127,511 + BACOVA_01469 0.82 +0.2
127,511 + BACOVA_01469 0.82 -1.3
127,511 + BACOVA_01469 0.82 +0.6
127,511 + BACOVA_01469 0.82 +0.7
127,511 + BACOVA_01469 0.82 -0.8
127,511 + BACOVA_01469 0.82 +1.5
127,512 - BACOVA_01469 0.82 -0.7
127,512 - BACOVA_01469 0.82 +0.1
127,512 - BACOVA_01469 0.82 -0.2
127,512 - BACOVA_01469 0.82 -0.2
127,515 + BACOVA_01469 0.83 +0.1
127,515 + BACOVA_01469 0.83 +0.1
127,515 + BACOVA_01469 0.83 +0.9
127,516 - BACOVA_01469 0.83 +0.4
127,593 + +1.3
127,605 + -0.9
127,605 + -0.3
127,632 + -1.1
127,645 + -0.5
127,651 + -1.1
127,652 - -1.3
127,652 - +1.1
127,660 + -0.1
127,671 - +0.1
127,676 + -0.4
127,719 - +0.4
127,730 + BACOVA_01470 0.11 -0.9
127,730 + BACOVA_01470 0.11 +0.4
127,730 + BACOVA_01470 0.11 -1.6
127,770 - BACOVA_01470 0.17 +0.1
127,852 + BACOVA_01470 0.28 -0.5
127,853 - BACOVA_01470 0.28 -0.6
127,988 + BACOVA_01470 0.47 -0.7
128,036 - BACOVA_01470 0.53 -0.9
128,036 - BACOVA_01470 0.53 +0.7
128,036 - BACOVA_01470 0.53 -0.3
128,037 + BACOVA_01470 0.53 +0.4
128,038 - BACOVA_01470 0.53 -0.9
128,038 - BACOVA_01470 0.53 +0.7
128,050 + BACOVA_01470 0.55 -0.3
128,150 - BACOVA_01470 0.69 -0.7
128,165 - BACOVA_01470 0.71 +1.1
128,178 - BACOVA_01470 0.73 -0.5
128,275 - BACOVA_01470 0.86 -0.9
128,279 + BACOVA_01470 0.87 +0.8
128,288 + BACOVA_01470 0.88 +1.8
128,301 + BACOVA_01470 0.90 -0.4
128,325 - -0.4
128,358 + -1.3
128,382 - +0.5
128,474 + BACOVA_01471 0.16 -0.9
128,507 + BACOVA_01471 0.21 +0.7

Or see this region's nucleotide sequence