Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00186

Experiment: polygalacturonic 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00185 and BACOVA_00186 are separated by 101 nucleotidesBACOVA_00186 and BACOVA_00187 are separated by 87 nucleotides BACOVA_00185: BACOVA_00185 - hypothetical protein, at 147 to 521 _00185 BACOVA_00186: BACOVA_00186 - hypothetical protein, at 623 to 1,627 _00186 BACOVA_00187: BACOVA_00187 - polysaccharide biosynthesis protein, at 1,715 to 3,262 _00187 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1 2 3at 0.565 kb on + strandat 0.565 kb on + strandat 0.591 kb on + strandat 0.602 kb on + strandat 0.621 kb on - strandat 0.625 kb on - strandat 0.625 kb on - strandat 0.626 kb on + strandat 0.627 kb on - strandat 0.632 kb on + strandat 0.633 kb on - strandat 0.634 kb on + strandat 0.681 kb on + strandat 0.694 kb on - strandat 0.694 kb on - strandat 0.695 kb on + strandat 0.696 kb on - strandat 0.733 kb on + strand, within BACOVA_00186at 0.733 kb on + strand, within BACOVA_00186at 0.733 kb on + strand, within BACOVA_00186at 0.735 kb on + strand, within BACOVA_00186at 0.736 kb on - strand, within BACOVA_00186at 0.736 kb on - strand, within BACOVA_00186at 0.752 kb on - strand, within BACOVA_00186at 0.778 kb on + strand, within BACOVA_00186at 0.783 kb on + strand, within BACOVA_00186at 0.784 kb on - strand, within BACOVA_00186at 0.788 kb on - strand, within BACOVA_00186at 0.826 kb on + strand, within BACOVA_00186at 0.826 kb on + strand, within BACOVA_00186at 0.826 kb on + strand, within BACOVA_00186at 0.826 kb on + strand, within BACOVA_00186at 0.827 kb on - strand, within BACOVA_00186at 0.827 kb on - strand, within BACOVA_00186at 0.851 kb on + strand, within BACOVA_00186at 0.855 kb on - strand, within BACOVA_00186at 0.893 kb on + strand, within BACOVA_00186at 0.911 kb on - strand, within BACOVA_00186at 0.913 kb on + strand, within BACOVA_00186at 0.952 kb on - strand, within BACOVA_00186at 0.954 kb on + strand, within BACOVA_00186at 0.955 kb on - strand, within BACOVA_00186at 0.958 kb on + strand, within BACOVA_00186at 0.959 kb on - strand, within BACOVA_00186at 0.959 kb on - strand, within BACOVA_00186at 1.012 kb on + strand, within BACOVA_00186at 1.041 kb on + strand, within BACOVA_00186at 1.041 kb on + strand, within BACOVA_00186at 1.042 kb on - strand, within BACOVA_00186at 1.042 kb on - strand, within BACOVA_00186at 1.045 kb on + strand, within BACOVA_00186at 1.052 kb on - strand, within BACOVA_00186at 1.052 kb on - strand, within BACOVA_00186at 1.085 kb on - strand, within BACOVA_00186at 1.086 kb on + strand, within BACOVA_00186at 1.086 kb on + strand, within BACOVA_00186at 1.100 kb on + strand, within BACOVA_00186at 1.100 kb on + strand, within BACOVA_00186at 1.100 kb on + strand, within BACOVA_00186at 1.101 kb on - strand, within BACOVA_00186at 1.109 kb on - strand, within BACOVA_00186at 1.109 kb on - strand, within BACOVA_00186at 1.180 kb on + strand, within BACOVA_00186at 1.199 kb on + strand, within BACOVA_00186at 1.248 kb on + strand, within BACOVA_00186at 1.248 kb on + strand, within BACOVA_00186at 1.255 kb on + strand, within BACOVA_00186at 1.255 kb on + strand, within BACOVA_00186at 1.256 kb on - strand, within BACOVA_00186at 1.256 kb on - strand, within BACOVA_00186at 1.262 kb on - strand, within BACOVA_00186at 1.322 kb on - strand, within BACOVA_00186at 1.380 kb on + strand, within BACOVA_00186at 1.422 kb on + strand, within BACOVA_00186at 1.506 kb on + strand, within BACOVA_00186at 1.512 kb on + strand, within BACOVA_00186at 1.512 kb on + strand, within BACOVA_00186at 1.513 kb on - strand, within BACOVA_00186at 1.555 kb on + strandat 1.630 kb on + strandat 1.636 kb on + strandat 1.667 kb on - strandat 1.703 kb on - strandat 1.703 kb on - strandat 1.705 kb on - strandat 1.720 kb on + strandat 1.721 kb on - strandat 1.729 kb on + strandat 1.734 kb on - strandat 1.770 kb on + strandat 1.826 kb on + strandat 1.838 kb on + strandat 1.839 kb on - strandat 1.839 kb on - strandat 1.843 kb on + strandat 1.847 kb on - strandat 1.853 kb on - strandat 1.856 kb on + strandat 1.856 kb on + strandat 1.919 kb on + strand, within BACOVA_00187at 1.922 kb on - strand, within BACOVA_00187at 1.922 kb on - strand, within BACOVA_00187at 1.935 kb on - strand, within BACOVA_00187at 1.939 kb on - strand, within BACOVA_00187at 1.991 kb on + strand, within BACOVA_00187at 2.000 kb on + strand, within BACOVA_00187at 2.008 kb on - strand, within BACOVA_00187at 2.008 kb on - strand, within BACOVA_00187at 2.009 kb on + strand, within BACOVA_00187at 2.010 kb on - strand, within BACOVA_00187at 2.010 kb on - strand, within BACOVA_00187at 2.012 kb on + strand, within BACOVA_00187at 2.041 kb on + strand, within BACOVA_00187at 2.041 kb on + strand, within BACOVA_00187at 2.041 kb on + strand, within BACOVA_00187at 2.043 kb on + strand, within BACOVA_00187at 2.043 kb on + strand, within BACOVA_00187at 2.051 kb on - strand, within BACOVA_00187at 2.065 kb on + strand, within BACOVA_00187at 2.067 kb on + strand, within BACOVA_00187at 2.067 kb on + strand, within BACOVA_00187at 2.076 kb on - strand, within BACOVA_00187at 2.082 kb on - strand, within BACOVA_00187at 2.082 kb on - strand, within BACOVA_00187at 2.108 kb on + strand, within BACOVA_00187at 2.109 kb on - strand, within BACOVA_00187at 2.155 kb on + strand, within BACOVA_00187at 2.156 kb on - strand, within BACOVA_00187at 2.156 kb on - strand, within BACOVA_00187at 2.174 kb on + strand, within BACOVA_00187at 2.175 kb on - strand, within BACOVA_00187at 2.197 kb on + strand, within BACOVA_00187at 2.198 kb on - strand, within BACOVA_00187at 2.210 kb on + strand, within BACOVA_00187at 2.210 kb on + strand, within BACOVA_00187at 2.223 kb on + strand, within BACOVA_00187at 2.224 kb on - strand, within BACOVA_00187at 2.243 kb on + strand, within BACOVA_00187at 2.256 kb on - strand, within BACOVA_00187at 2.330 kb on - strand, within BACOVA_00187at 2.330 kb on - strand, within BACOVA_00187at 2.332 kb on - strand, within BACOVA_00187at 2.362 kb on + strand, within BACOVA_00187at 2.396 kb on - strand, within BACOVA_00187at 2.405 kb on - strand, within BACOVA_00187at 2.414 kb on - strand, within BACOVA_00187at 2.429 kb on + strand, within BACOVA_00187at 2.454 kb on - strand, within BACOVA_00187at 2.487 kb on + strand, within BACOVA_00187at 2.498 kb on + strand, within BACOVA_00187at 2.527 kb on + strand, within BACOVA_00187at 2.534 kb on - strand, within BACOVA_00187at 2.534 kb on - strand, within BACOVA_00187at 2.599 kb on - strand, within BACOVA_00187at 2.603 kb on + strand, within BACOVA_00187

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic 2.5 mg/ml (C)
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565 + +1.3
565 + +1.8
591 + -2.5
602 + +0.7
621 - -0.5
625 - -1.9
625 - +0.0
626 + +0.1
627 - -0.9
632 + +1.4
633 - -0.9
634 + -0.7
681 + -0.1
694 - +1.8
694 - +0.7
695 + +0.7
696 - +2.3
733 + BACOVA_00186 0.11 +0.5
733 + BACOVA_00186 0.11 +0.3
733 + BACOVA_00186 0.11 +0.3
735 + BACOVA_00186 0.11 +0.3
736 - BACOVA_00186 0.11 -0.0
736 - BACOVA_00186 0.11 +0.3
752 - BACOVA_00186 0.13 +0.6
778 + BACOVA_00186 0.15 +0.1
783 + BACOVA_00186 0.16 -0.9
784 - BACOVA_00186 0.16 +0.9
788 - BACOVA_00186 0.16 +0.6
826 + BACOVA_00186 0.20 +0.3
826 + BACOVA_00186 0.20 +0.3
826 + BACOVA_00186 0.20 +0.4
826 + BACOVA_00186 0.20 -0.2
827 - BACOVA_00186 0.20 -0.3
827 - BACOVA_00186 0.20 -0.5
851 + BACOVA_00186 0.23 -0.5
855 - BACOVA_00186 0.23 +0.2
893 + BACOVA_00186 0.27 +0.5
911 - BACOVA_00186 0.29 +0.8
913 + BACOVA_00186 0.29 +0.1
952 - BACOVA_00186 0.33 -0.1
954 + BACOVA_00186 0.33 +0.9
955 - BACOVA_00186 0.33 -0.2
958 + BACOVA_00186 0.33 +0.9
959 - BACOVA_00186 0.33 -0.5
959 - BACOVA_00186 0.33 -0.3
1,012 + BACOVA_00186 0.39 -0.5
1,041 + BACOVA_00186 0.42 -0.2
1,041 + BACOVA_00186 0.42 -0.8
1,042 - BACOVA_00186 0.42 +0.7
1,042 - BACOVA_00186 0.42 -0.4
1,045 + BACOVA_00186 0.42 +1.1
1,052 - BACOVA_00186 0.43 -0.1
1,052 - BACOVA_00186 0.43 +0.6
1,085 - BACOVA_00186 0.46 -1.7
1,086 + BACOVA_00186 0.46 -1.4
1,086 + BACOVA_00186 0.46 +0.6
1,100 + BACOVA_00186 0.47 -0.9
1,100 + BACOVA_00186 0.47 +1.7
1,100 + BACOVA_00186 0.47 +0.8
1,101 - BACOVA_00186 0.48 -0.7
1,109 - BACOVA_00186 0.48 -0.3
1,109 - BACOVA_00186 0.48 +0.5
1,180 + BACOVA_00186 0.55 -0.5
1,199 + BACOVA_00186 0.57 +0.8
1,248 + BACOVA_00186 0.62 -0.7
1,248 + BACOVA_00186 0.62 -0.2
1,255 + BACOVA_00186 0.63 +0.7
1,255 + BACOVA_00186 0.63 +0.3
1,256 - BACOVA_00186 0.63 +1.5
1,256 - BACOVA_00186 0.63 +0.6
1,262 - BACOVA_00186 0.64 +0.1
1,322 - BACOVA_00186 0.70 -0.4
1,380 + BACOVA_00186 0.75 +0.1
1,422 + BACOVA_00186 0.80 -2.1
1,506 + BACOVA_00186 0.88 +0.9
1,512 + BACOVA_00186 0.88 -0.1
1,512 + BACOVA_00186 0.88 +1.1
1,513 - BACOVA_00186 0.89 -1.1
1,555 + +0.1
1,630 + -0.5
1,636 + +1.9
1,667 - +0.1
1,703 - -0.2
1,703 - -1.1
1,705 - -0.5
1,720 + +1.1
1,721 - -0.7
1,729 + -1.2
1,734 - -0.3
1,770 + +0.1
1,826 + +0.6
1,838 + +1.5
1,839 - -0.0
1,839 - -0.2
1,843 + -0.9
1,847 - +1.5
1,853 - -1.4
1,856 + +0.8
1,856 + +1.4
1,919 + BACOVA_00187 0.13 -0.4
1,922 - BACOVA_00187 0.13 -0.9
1,922 - BACOVA_00187 0.13 +0.1
1,935 - BACOVA_00187 0.14 -0.3
1,939 - BACOVA_00187 0.14 +2.7
1,991 + BACOVA_00187 0.18 -0.9
2,000 + BACOVA_00187 0.18 -0.6
2,008 - BACOVA_00187 0.19 -1.1
2,008 - BACOVA_00187 0.19 -0.2
2,009 + BACOVA_00187 0.19 -0.0
2,010 - BACOVA_00187 0.19 -0.4
2,010 - BACOVA_00187 0.19 +0.1
2,012 + BACOVA_00187 0.19 +0.2
2,041 + BACOVA_00187 0.21 -0.9
2,041 + BACOVA_00187 0.21 +0.5
2,041 + BACOVA_00187 0.21 +1.1
2,043 + BACOVA_00187 0.21 -0.1
2,043 + BACOVA_00187 0.21 -0.4
2,051 - BACOVA_00187 0.22 +3.1
2,065 + BACOVA_00187 0.23 -1.3
2,067 + BACOVA_00187 0.23 -0.9
2,067 + BACOVA_00187 0.23 +0.5
2,076 - BACOVA_00187 0.23 -0.6
2,082 - BACOVA_00187 0.24 -0.5
2,082 - BACOVA_00187 0.24 -0.5
2,108 + BACOVA_00187 0.25 +0.1
2,109 - BACOVA_00187 0.25 -0.3
2,155 + BACOVA_00187 0.28 -0.8
2,156 - BACOVA_00187 0.28 -0.5
2,156 - BACOVA_00187 0.28 -0.5
2,174 + BACOVA_00187 0.30 -0.5
2,175 - BACOVA_00187 0.30 +0.5
2,197 + BACOVA_00187 0.31 -0.5
2,198 - BACOVA_00187 0.31 -0.0
2,210 + BACOVA_00187 0.32 -2.4
2,210 + BACOVA_00187 0.32 +0.1
2,223 + BACOVA_00187 0.33 -0.8
2,224 - BACOVA_00187 0.33 -0.1
2,243 + BACOVA_00187 0.34 +2.3
2,256 - BACOVA_00187 0.35 +0.3
2,330 - BACOVA_00187 0.40 +0.6
2,330 - BACOVA_00187 0.40 -0.4
2,332 - BACOVA_00187 0.40 +0.6
2,362 + BACOVA_00187 0.42 -0.4
2,396 - BACOVA_00187 0.44 +0.1
2,405 - BACOVA_00187 0.45 -0.4
2,414 - BACOVA_00187 0.45 +1.1
2,429 + BACOVA_00187 0.46 +0.2
2,454 - BACOVA_00187 0.48 -1.3
2,487 + BACOVA_00187 0.50 -0.3
2,498 + BACOVA_00187 0.51 +2.1
2,527 + BACOVA_00187 0.52 -0.6
2,534 - BACOVA_00187 0.53 +0.1
2,534 - BACOVA_00187 0.53 -0.7
2,599 - BACOVA_00187 0.57 +0.0
2,603 + BACOVA_00187 0.57 -0.8

Or see this region's nucleotide sequence