Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04201

Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan I from potato pectic fiber 2.5 mg/ml (C)
76,841	+		BACOVA_04200	0.29	+1.2
76,841	+		BACOVA_04200	0.29	-0.7
76,842	-		BACOVA_04200	0.29	+0.0
76,931	-		BACOVA_04200	0.36	-0.3
76,937	-		BACOVA_04200	0.36	-1.2
76,937	-		BACOVA_04200	0.36	-1.6
76,941	-		BACOVA_04200	0.36	-1.7
76,945	+		BACOVA_04200	0.37	-1.1
76,946	-		BACOVA_04200	0.37	-0.7
76,950	-		BACOVA_04200	0.37	-0.5
76,953	-		BACOVA_04200	0.37	-0.3
76,953	-		BACOVA_04200	0.37	+0.6
76,977	-		BACOVA_04200	0.39	-0.5
77,029	+		BACOVA_04200	0.43	-2.0
77,029	+		BACOVA_04200	0.43	+0.2
77,029	+		BACOVA_04200	0.43	+0.7
77,030	-		BACOVA_04200	0.43	-0.5
77,038	+		BACOVA_04200	0.43	+1.4
77,138	+		BACOVA_04200	0.51	-0.5
77,138	+		BACOVA_04200	0.51	-0.5
77,148	+		BACOVA_04200	0.51	+0.9
77,149	-		BACOVA_04200	0.52	+0.2
77,251	+		BACOVA_04200	0.59	-0.5
77,268	-		BACOVA_04200	0.60	+0.4
77,268	-		BACOVA_04200	0.60	+1.3
77,351	+		BACOVA_04200	0.66	+0.3
77,351	+		BACOVA_04200	0.66	+0.0
77,351	+		BACOVA_04200	0.66	-0.0
77,394	-		BACOVA_04200	0.69	+0.4
77,440	+		BACOVA_04200	0.73	-0.3
77,441	-		BACOVA_04200	0.73	-0.6
77,441	-		BACOVA_04200	0.73	-1.1
77,441	-		BACOVA_04200	0.73	-0.7
77,441	-		BACOVA_04200	0.73	-0.1
77,443	+		BACOVA_04200	0.73	-0.1
77,446	+		BACOVA_04200	0.73	+1.3
77,485	-		BACOVA_04200	0.76	+0.2
77,539	-		BACOVA_04200	0.80	-0.3
77,614	+		BACOVA_04200	0.86	-0.1
77,615	-		BACOVA_04200	0.86	+0.3
77,782	-				+1.0
77,787	-				-0.7
77,802	-				-0.3
77,816	-				-0.7
77,833	+				-0.1
77,833	+				+1.0
77,833	+				+0.6
77,835	+				-0.9
77,835	+				-0.7
77,835	+				-0.1
77,836	-				-0.5
77,836	-				+0.6
77,836	-				-0.4
77,836	-				+0.3
77,837	+				+0.3
77,837	+				+0.1
77,838	-				-0.9
77,838	-				-0.4
77,838	-				+0.1
77,838	-				-0.1
77,858	-				-1.6
77,862	+				+0.7
77,862	+				-1.0
77,863	-				-1.2
77,863	-				-0.9
77,867	-				+0.9
77,893	-				+0.4
77,893	-				+1.9
77,925	+				-0.0
77,934	+				-0.2
77,934	+				+2.2
77,934	+				+0.6
77,935	-				-0.0
77,978	-		BACOVA_04201	0.13	+1.4
77,983	-		BACOVA_04201	0.13	-2.6
78,041	-		BACOVA_04201	0.18	-0.5
78,047	+		BACOVA_04201	0.18	+1.3
78,047	+		BACOVA_04201	0.18	+1.0
78,223	-		BACOVA_04201	0.32	-0.1
78,279	-		BACOVA_04201	0.37	-1.9
78,296	-		BACOVA_04201	0.38	-1.3
78,368	-		BACOVA_04201	0.44	-0.4
78,368	-		BACOVA_04201	0.44	-0.5
78,378	+		BACOVA_04201	0.45	-0.8
78,379	-		BACOVA_04201	0.45	-1.7
78,412	+		BACOVA_04201	0.48	+1.0
78,438	+		BACOVA_04201	0.50	+0.9
78,439	-		BACOVA_04201	0.50	+0.7
78,439	-		BACOVA_04201	0.50	+0.4
78,452	-		BACOVA_04201	0.51	+0.2
78,550	+		BACOVA_04201	0.59	+0.5
78,551	-		BACOVA_04201	0.59	+0.9
78,719	-		BACOVA_04201	0.72	+0.9
78,765	+		BACOVA_04201	0.76	-0.1
78,791	-		BACOVA_04201	0.78	-0.1
78,791	-		BACOVA_04201	0.78	+0.4
78,862	+		BACOVA_04201	0.83	+0.1
78,862	+		BACOVA_04201	0.83	+0.1
78,862	+		BACOVA_04201	0.83	-0.1
78,863	-		BACOVA_04201	0.83	-1.0
78,865	-		BACOVA_04201	0.84	+1.0
78,869	+		BACOVA_04201	0.84	-0.3
78,922	-		BACOVA_04201	0.88	+1.3
79,015	+				-0.8
79,068	-				-0.8
79,098	+				-0.4
79,098	+				-0.8
79,098	+				-0.9
79,107	-				+1.0
79,154	+				-1.1
79,247	+		BACOVA_04202	0.12	-1.1
79,247	+		BACOVA_04202	0.12	-0.7
79,258	-		BACOVA_04202	0.13	-0.3
79,352	-		BACOVA_04202	0.22	-1.0
79,421	+		BACOVA_04202	0.29	-0.5
79,421	+		BACOVA_04202	0.29	+0.4
79,422	-		BACOVA_04202	0.29	-0.2
79,424	-		BACOVA_04202	0.29	-0.1
79,424	-		BACOVA_04202	0.29	+0.5
79,479	+		BACOVA_04202	0.34	-1.3
79,480	-		BACOVA_04202	0.34	-0.1
79,480	-		BACOVA_04202	0.34	-0.2
79,493	-		BACOVA_04202	0.36	+0.9
79,515	+		BACOVA_04202	0.38	-0.3
79,515	+		BACOVA_04202	0.38	-0.5
79,515	+		BACOVA_04202	0.38	-1.5
79,516	-		BACOVA_04202	0.38	-0.3
79,595	+		BACOVA_04202	0.46	-0.1
79,632	-		BACOVA_04202	0.49	-0.2
79,632	-		BACOVA_04202	0.49	-0.7
79,667	-		BACOVA_04202	0.53	+0.3
79,693	+		BACOVA_04202	0.55	-0.1
79,694	-		BACOVA_04202	0.55	+0.5
79,756	+		BACOVA_04202	0.61	+0.9
79,762	-		BACOVA_04202	0.62	+0.3
79,766	+		BACOVA_04202	0.62	-0.3
79,767	-		BACOVA_04202	0.62	+0.4
79,854	+		BACOVA_04202	0.71	+0.0
79,874	+		BACOVA_04202	0.73	+0.7
79,874	+		BACOVA_04202	0.73	+0.2
79,874	+		BACOVA_04202	0.73	-1.7
79,875	-		BACOVA_04202	0.73	+0.3
80,009	-		BACOVA_04202	0.86	+0.9