Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03748

Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03747 and BACOVA_03748 are separated by 375 nucleotidesBACOVA_03748 and BACOVA_03749 are separated by 17 nucleotides BACOVA_03747: BACOVA_03747 - site-specific recombinase, phage integrase family, at 76,992 to 77,708 _03747 BACOVA_03748: BACOVA_03748 - Ser/Thr phosphatase family protein, at 78,084 to 79,181 _03748 BACOVA_03749: BACOVA_03749 - hypothetical protein, at 79,199 to 80,212 _03749 Position (kb) 78 79 80Strain fitness (log2 ratio) -2 -1 0 1 2at 77.094 kb on - strand, within BACOVA_03747at 77.094 kb on - strand, within BACOVA_03747at 77.102 kb on + strand, within BACOVA_03747at 77.136 kb on + strand, within BACOVA_03747at 77.136 kb on + strand, within BACOVA_03747at 77.136 kb on + strand, within BACOVA_03747at 77.146 kb on + strand, within BACOVA_03747at 77.146 kb on + strand, within BACOVA_03747at 77.147 kb on - strand, within BACOVA_03747at 77.180 kb on + strand, within BACOVA_03747at 77.180 kb on + strand, within BACOVA_03747at 77.209 kb on - strand, within BACOVA_03747at 77.220 kb on + strand, within BACOVA_03747at 77.263 kb on + strand, within BACOVA_03747at 77.270 kb on + strand, within BACOVA_03747at 77.271 kb on - strand, within BACOVA_03747at 77.273 kb on - strand, within BACOVA_03747at 77.308 kb on - strand, within BACOVA_03747at 77.310 kb on + strand, within BACOVA_03747at 77.357 kb on + strand, within BACOVA_03747at 77.360 kb on + strand, within BACOVA_03747at 77.361 kb on - strand, within BACOVA_03747at 77.361 kb on - strand, within BACOVA_03747at 77.379 kb on - strand, within BACOVA_03747at 77.403 kb on + strand, within BACOVA_03747at 77.403 kb on + strand, within BACOVA_03747at 77.406 kb on - strand, within BACOVA_03747at 77.438 kb on - strand, within BACOVA_03747at 77.446 kb on - strand, within BACOVA_03747at 77.514 kb on + strand, within BACOVA_03747at 77.570 kb on - strand, within BACOVA_03747at 77.570 kb on - strand, within BACOVA_03747at 77.595 kb on - strand, within BACOVA_03747at 77.619 kb on + strand, within BACOVA_03747at 77.619 kb on - strand, within BACOVA_03747at 77.619 kb on - strand, within BACOVA_03747at 77.622 kb on + strand, within BACOVA_03747at 77.623 kb on - strand, within BACOVA_03747at 77.658 kb on - strandat 77.659 kb on + strandat 77.675 kb on + strandat 77.676 kb on - strandat 77.680 kb on - strandat 77.692 kb on + strandat 77.692 kb on + strandat 77.692 kb on + strandat 77.692 kb on + strandat 77.693 kb on - strandat 77.693 kb on - strandat 77.693 kb on - strandat 77.704 kb on - strandat 77.714 kb on + strandat 77.714 kb on + strandat 77.714 kb on + strandat 77.717 kb on - strandat 77.768 kb on - strandat 77.789 kb on + strandat 77.789 kb on + strandat 77.789 kb on + strandat 77.854 kb on + strandat 77.902 kb on + strandat 77.922 kb on - strandat 77.945 kb on - strandat 77.948 kb on - strandat 77.978 kb on + strandat 78.045 kb on + strandat 78.049 kb on - strandat 78.055 kb on + strandat 78.063 kb on - strandat 78.063 kb on - strandat 78.078 kb on + strandat 78.082 kb on + strandat 78.192 kb on + strandat 78.193 kb on - strandat 78.197 kb on + strand, within BACOVA_03748at 78.198 kb on - strand, within BACOVA_03748at 78.229 kb on + strand, within BACOVA_03748at 78.229 kb on + strand, within BACOVA_03748at 78.301 kb on + strand, within BACOVA_03748at 78.342 kb on - strand, within BACOVA_03748at 78.342 kb on - strand, within BACOVA_03748at 78.347 kb on + strand, within BACOVA_03748at 78.348 kb on - strand, within BACOVA_03748at 78.348 kb on - strand, within BACOVA_03748at 78.449 kb on + strand, within BACOVA_03748at 78.450 kb on - strand, within BACOVA_03748at 78.450 kb on - strand, within BACOVA_03748at 78.467 kb on + strand, within BACOVA_03748at 78.488 kb on + strand, within BACOVA_03748at 78.528 kb on + strand, within BACOVA_03748at 78.542 kb on + strand, within BACOVA_03748at 78.542 kb on + strand, within BACOVA_03748at 78.585 kb on - strand, within BACOVA_03748at 78.586 kb on + strand, within BACOVA_03748at 78.586 kb on + strand, within BACOVA_03748at 78.587 kb on - strand, within BACOVA_03748at 78.644 kb on - strand, within BACOVA_03748at 78.665 kb on - strand, within BACOVA_03748at 78.753 kb on + strand, within BACOVA_03748at 78.767 kb on - strand, within BACOVA_03748at 78.785 kb on + strand, within BACOVA_03748at 78.809 kb on - strand, within BACOVA_03748at 78.863 kb on + strand, within BACOVA_03748at 79.011 kb on - strand, within BACOVA_03748at 79.021 kb on - strand, within BACOVA_03748at 79.021 kb on - strand, within BACOVA_03748at 79.021 kb on - strand, within BACOVA_03748at 79.021 kb on - strand, within BACOVA_03748at 79.074 kb on + strandat 79.075 kb on - strandat 79.075 kb on - strandat 79.088 kb on - strandat 79.089 kb on + strandat 79.090 kb on - strandat 79.091 kb on + strandat 79.091 kb on + strandat 79.171 kb on - strandat 79.193 kb on - strandat 79.216 kb on + strandat 79.220 kb on + strandat 79.241 kb on - strandat 79.268 kb on - strandat 79.269 kb on + strandat 79.270 kb on - strandat 79.326 kb on + strand, within BACOVA_03749at 79.331 kb on - strand, within BACOVA_03749at 79.375 kb on + strand, within BACOVA_03749at 79.375 kb on + strand, within BACOVA_03749at 79.376 kb on - strand, within BACOVA_03749at 79.379 kb on + strand, within BACOVA_03749at 79.451 kb on - strand, within BACOVA_03749at 79.459 kb on + strand, within BACOVA_03749at 79.508 kb on + strand, within BACOVA_03749at 79.513 kb on + strand, within BACOVA_03749at 79.529 kb on + strand, within BACOVA_03749at 79.530 kb on - strand, within BACOVA_03749at 79.530 kb on - strand, within BACOVA_03749at 79.531 kb on + strand, within BACOVA_03749at 79.531 kb on + strand, within BACOVA_03749at 79.533 kb on + strand, within BACOVA_03749at 79.533 kb on + strand, within BACOVA_03749at 79.577 kb on - strand, within BACOVA_03749at 79.598 kb on - strand, within BACOVA_03749at 79.601 kb on - strand, within BACOVA_03749at 79.602 kb on + strand, within BACOVA_03749at 79.602 kb on + strand, within BACOVA_03749at 79.603 kb on - strand, within BACOVA_03749at 79.659 kb on + strand, within BACOVA_03749at 79.660 kb on - strand, within BACOVA_03749at 79.660 kb on - strand, within BACOVA_03749at 79.667 kb on - strand, within BACOVA_03749at 79.697 kb on - strand, within BACOVA_03749at 79.711 kb on + strand, within BACOVA_03749at 79.711 kb on + strand, within BACOVA_03749at 79.714 kb on + strand, within BACOVA_03749at 79.786 kb on + strand, within BACOVA_03749at 79.892 kb on - strand, within BACOVA_03749at 79.959 kb on + strand, within BACOVA_03749at 79.963 kb on + strand, within BACOVA_03749at 80.003 kb on - strand, within BACOVA_03749at 80.017 kb on + strand, within BACOVA_03749at 80.018 kb on - strand, within BACOVA_03749at 80.026 kb on + strand, within BACOVA_03749at 80.027 kb on - strand, within BACOVA_03749at 80.035 kb on + strand, within BACOVA_03749at 80.068 kb on + strand, within BACOVA_03749at 80.119 kb on + strandat 80.120 kb on - strandat 80.120 kb on - strandat 80.153 kb on - strandat 80.153 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber 2.5 mg/ml (C)
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77,094 - BACOVA_03747 0.14 -1.2
77,094 - BACOVA_03747 0.14 -0.2
77,102 + BACOVA_03747 0.15 -1.2
77,136 + BACOVA_03747 0.20 +0.2
77,136 + BACOVA_03747 0.20 -0.6
77,136 + BACOVA_03747 0.20 +0.2
77,146 + BACOVA_03747 0.21 -1.0
77,146 + BACOVA_03747 0.21 -0.3
77,147 - BACOVA_03747 0.22 -0.8
77,180 + BACOVA_03747 0.26 -1.7
77,180 + BACOVA_03747 0.26 -0.4
77,209 - BACOVA_03747 0.30 +1.5
77,220 + BACOVA_03747 0.32 -0.4
77,263 + BACOVA_03747 0.38 +1.2
77,270 + BACOVA_03747 0.39 +0.2
77,271 - BACOVA_03747 0.39 -1.6
77,273 - BACOVA_03747 0.39 +1.6
77,308 - BACOVA_03747 0.44 -0.8
77,310 + BACOVA_03747 0.44 +0.0
77,357 + BACOVA_03747 0.51 +0.2
77,360 + BACOVA_03747 0.51 -1.6
77,361 - BACOVA_03747 0.51 +0.1
77,361 - BACOVA_03747 0.51 -0.1
77,379 - BACOVA_03747 0.54 +0.2
77,403 + BACOVA_03747 0.57 +0.7
77,403 + BACOVA_03747 0.57 -0.2
77,406 - BACOVA_03747 0.58 +0.8
77,438 - BACOVA_03747 0.62 -0.5
77,446 - BACOVA_03747 0.63 -1.0
77,514 + BACOVA_03747 0.73 -0.2
77,570 - BACOVA_03747 0.81 +0.3
77,570 - BACOVA_03747 0.81 +1.1
77,595 - BACOVA_03747 0.84 -0.8
77,619 + BACOVA_03747 0.87 -0.2
77,619 - BACOVA_03747 0.87 -0.6
77,619 - BACOVA_03747 0.87 -0.0
77,622 + BACOVA_03747 0.88 -1.1
77,623 - BACOVA_03747 0.88 -0.8
77,658 - +1.1
77,659 + +0.4
77,675 + -0.8
77,676 - +0.1
77,680 - +0.3
77,692 + -0.0
77,692 + +0.8
77,692 + -0.2
77,692 + -0.3
77,693 - -1.2
77,693 - +0.8
77,693 - +0.3
77,704 - +0.8
77,714 + -1.0
77,714 + -1.6
77,714 + +0.4
77,717 - +0.5
77,768 - +0.3
77,789 + -1.2
77,789 + +0.8
77,789 + +0.8
77,854 + +0.1
77,902 + +1.8
77,922 - +1.2
77,945 - -0.1
77,948 - +0.2
77,978 + -1.0
78,045 + -1.0
78,049 - +0.6
78,055 + -0.3
78,063 - -0.5
78,063 - +0.6
78,078 + -0.1
78,082 + -0.6
78,192 + +1.1
78,193 - -0.8
78,197 + BACOVA_03748 0.10 +1.8
78,198 - BACOVA_03748 0.10 +0.5
78,229 + BACOVA_03748 0.13 -0.1
78,229 + BACOVA_03748 0.13 -0.1
78,301 + BACOVA_03748 0.20 +2.3
78,342 - BACOVA_03748 0.23 +0.3
78,342 - BACOVA_03748 0.23 +1.4
78,347 + BACOVA_03748 0.24 -1.9
78,348 - BACOVA_03748 0.24 -0.4
78,348 - BACOVA_03748 0.24 +0.1
78,449 + BACOVA_03748 0.33 -0.2
78,450 - BACOVA_03748 0.33 -0.4
78,450 - BACOVA_03748 0.33 -0.9
78,467 + BACOVA_03748 0.35 +0.1
78,488 + BACOVA_03748 0.37 +0.8
78,528 + BACOVA_03748 0.40 -0.2
78,542 + BACOVA_03748 0.42 +0.8
78,542 + BACOVA_03748 0.42 +0.1
78,585 - BACOVA_03748 0.46 -2.0
78,586 + BACOVA_03748 0.46 +0.1
78,586 + BACOVA_03748 0.46 -0.3
78,587 - BACOVA_03748 0.46 +0.2
78,644 - BACOVA_03748 0.51 -0.0
78,665 - BACOVA_03748 0.53 +0.0
78,753 + BACOVA_03748 0.61 -0.9
78,767 - BACOVA_03748 0.62 +0.1
78,785 + BACOVA_03748 0.64 -1.5
78,809 - BACOVA_03748 0.66 +1.4
78,863 + BACOVA_03748 0.71 -0.4
79,011 - BACOVA_03748 0.84 -0.2
79,021 - BACOVA_03748 0.85 +0.2
79,021 - BACOVA_03748 0.85 +0.4
79,021 - BACOVA_03748 0.85 +0.3
79,021 - BACOVA_03748 0.85 -0.8
79,074 + +1.0
79,075 - -0.2
79,075 - +0.2
79,088 - -1.5
79,089 + +1.0
79,090 - +2.7
79,091 + +1.1
79,091 + +1.5
79,171 - -1.4
79,193 - -0.6
79,216 + +1.0
79,220 + +1.2
79,241 - -0.2
79,268 - -2.4
79,269 + +0.4
79,270 - +0.3
79,326 + BACOVA_03749 0.13 +1.0
79,331 - BACOVA_03749 0.13 +1.5
79,375 + BACOVA_03749 0.17 +0.7
79,375 + BACOVA_03749 0.17 -0.8
79,376 - BACOVA_03749 0.17 -0.1
79,379 + BACOVA_03749 0.18 -0.5
79,451 - BACOVA_03749 0.25 -0.2
79,459 + BACOVA_03749 0.26 -1.4
79,508 + BACOVA_03749 0.30 +0.2
79,513 + BACOVA_03749 0.31 +0.3
79,529 + BACOVA_03749 0.33 +0.8
79,530 - BACOVA_03749 0.33 +0.4
79,530 - BACOVA_03749 0.33 -0.3
79,531 + BACOVA_03749 0.33 -0.5
79,531 + BACOVA_03749 0.33 -0.6
79,533 + BACOVA_03749 0.33 +1.0
79,533 + BACOVA_03749 0.33 +0.8
79,577 - BACOVA_03749 0.37 +0.1
79,598 - BACOVA_03749 0.39 -0.1
79,601 - BACOVA_03749 0.40 +1.1
79,602 + BACOVA_03749 0.40 -1.8
79,602 + BACOVA_03749 0.40 +0.2
79,603 - BACOVA_03749 0.40 -0.3
79,659 + BACOVA_03749 0.45 +0.1
79,660 - BACOVA_03749 0.45 +0.0
79,660 - BACOVA_03749 0.45 -0.2
79,667 - BACOVA_03749 0.46 -1.9
79,697 - BACOVA_03749 0.49 +1.5
79,711 + BACOVA_03749 0.50 +1.3
79,711 + BACOVA_03749 0.50 -0.6
79,714 + BACOVA_03749 0.51 +0.9
79,786 + BACOVA_03749 0.58 +1.1
79,892 - BACOVA_03749 0.68 +0.0
79,959 + BACOVA_03749 0.75 -0.2
79,963 + BACOVA_03749 0.75 +1.1
80,003 - BACOVA_03749 0.79 -1.2
80,017 + BACOVA_03749 0.81 -1.6
80,018 - BACOVA_03749 0.81 -0.4
80,026 + BACOVA_03749 0.82 +0.5
80,027 - BACOVA_03749 0.82 -0.1
80,035 + BACOVA_03749 0.82 -0.6
80,068 + BACOVA_03749 0.86 -0.8
80,119 + +0.2
80,120 - +1.1
80,120 - +0.6
80,153 - -0.6
80,153 - -0.2

Or see this region's nucleotide sequence