Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02234 and BACOVA_02236 are separated by 7 nucleotides BACOVA_02236 and BACOVA_02237 are separated by 24 nucleotides BACOVA_02237 and BACOVA_02238 are separated by 5 nucleotides BACOVA_02238 and BACOVA_02239 overlap by 4 nucleotides
BACOVA_02234: BACOVA_02234 - positive regulator of sigma(E), RseC/MucC, at 15,145 to 15,570
_02234
BACOVA_02236: BACOVA_02236 - electron transport complex, RnfABCDGE type, B subunit, at 15,578 to 16,531
_02236
BACOVA_02237: BACOVA_02237 - electron transport complex, RnfABCDGE type, C subunit, at 16,556 to 17,893
_02237
BACOVA_02238: BACOVA_02238 - electron transport complex, RnfABCDGE type, D subunit, at 17,899 to 18,891
_02238
BACOVA_02239: BACOVA_02239 - electron transport complex, RnfABCDGE type, G subunit, at 18,888 to 19,634
_02239
Position (kb) 16
17
18 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 15.561 kb on - strand at 15.569 kb on - strand at 15.569 kb on - strand at 15.578 kb on - strand at 15.617 kb on - strand at 15.617 kb on - strand at 15.617 kb on - strand at 15.644 kb on + strand at 15.644 kb on + strand at 15.880 kb on - strand, within BACOVA_02236 at 15.889 kb on - strand, within BACOVA_02236 at 15.907 kb on + strand, within BACOVA_02236 at 15.908 kb on - strand, within BACOVA_02236 at 15.922 kb on + strand, within BACOVA_02236 at 15.972 kb on - strand, within BACOVA_02236 at 15.991 kb on + strand, within BACOVA_02236 at 15.992 kb on - strand, within BACOVA_02236 at 15.995 kb on + strand, within BACOVA_02236 at 16.097 kb on - strand, within BACOVA_02236 at 16.179 kb on - strand, within BACOVA_02236 at 16.181 kb on - strand, within BACOVA_02236 at 16.196 kb on - strand, within BACOVA_02236 at 16.219 kb on + strand, within BACOVA_02236 at 16.219 kb on + strand, within BACOVA_02236 at 16.229 kb on - strand, within BACOVA_02236 at 16.241 kb on - strand, within BACOVA_02236 at 16.308 kb on - strand, within BACOVA_02236 at 16.445 kb on - strand at 16.445 kb on - strand at 16.496 kb on + strand at 16.530 kb on - strand at 16.530 kb on - strand at 16.530 kb on - strand at 16.545 kb on + strand at 16.555 kb on + strand at 16.600 kb on + strand at 16.723 kb on - strand, within BACOVA_02237 at 16.730 kb on - strand, within BACOVA_02237 at 16.807 kb on + strand, within BACOVA_02237 at 16.840 kb on + strand, within BACOVA_02237 at 16.987 kb on + strand, within BACOVA_02237 at 17.116 kb on - strand, within BACOVA_02237 at 17.177 kb on - strand, within BACOVA_02237 at 17.180 kb on - strand, within BACOVA_02237 at 17.207 kb on - strand, within BACOVA_02237 at 17.329 kb on + strand, within BACOVA_02237 at 17.330 kb on - strand, within BACOVA_02237 at 17.330 kb on - strand, within BACOVA_02237 at 17.525 kb on - strand, within BACOVA_02237 at 17.587 kb on + strand, within BACOVA_02237 at 17.709 kb on - strand, within BACOVA_02237 at 17.777 kb on - strand at 17.899 kb on - strand at 17.918 kb on + strand at 17.919 kb on - strand at 17.955 kb on - strand at 17.969 kb on - strand at 17.969 kb on - strand at 17.969 kb on - strand at 17.969 kb on - strand at 18.166 kb on - strand, within BACOVA_02238 at 18.196 kb on - strand, within BACOVA_02238 at 18.232 kb on - strand, within BACOVA_02238 at 18.252 kb on - strand, within BACOVA_02238 at 18.394 kb on - strand, within BACOVA_02238 at 18.410 kb on - strand, within BACOVA_02238 at 18.524 kb on - strand, within BACOVA_02238 at 18.525 kb on + strand, within BACOVA_02238 at 18.525 kb on + strand, within BACOVA_02238 at 18.526 kb on - strand, within BACOVA_02238 at 18.526 kb on - strand, within BACOVA_02238 at 18.556 kb on - strand, within BACOVA_02238 at 18.556 kb on - strand, within BACOVA_02238 at 18.695 kb on - strand, within BACOVA_02238 at 18.695 kb on - strand, within BACOVA_02238 at 18.734 kb on - strand, within BACOVA_02238 at 18.734 kb on - strand, within BACOVA_02238 at 18.740 kb on + strand, within BACOVA_02238 at 18.740 kb on + strand, within BACOVA_02238 at 18.741 kb on - strand, within BACOVA_02238 at 18.741 kb on - strand, within BACOVA_02238 at 18.741 kb on - strand, within BACOVA_02238 at 18.741 kb on - strand, within BACOVA_02238 at 18.848 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber 2.5 mg/ml (C) remove 15,561 - +0.7 15,569 - -4.3 15,569 - -1.3 15,578 - -1.3 15,617 - -3.0 15,617 - -1.6 15,617 - -2.9 15,644 + -2.1 15,644 + -1.6 15,880 - BACOVA_02236 0.32 -1.6 15,889 - BACOVA_02236 0.33 -1.9 15,907 + BACOVA_02236 0.34 -0.3 15,908 - BACOVA_02236 0.35 -2.1 15,922 + BACOVA_02236 0.36 -1.6 15,972 - BACOVA_02236 0.41 -1.3 15,991 + BACOVA_02236 0.43 -1.9 15,992 - BACOVA_02236 0.43 -2.6 15,995 + BACOVA_02236 0.44 -1.3 16,097 - BACOVA_02236 0.54 -2.3 16,179 - BACOVA_02236 0.63 -0.9 16,181 - BACOVA_02236 0.63 -0.3 16,196 - BACOVA_02236 0.65 -0.9 16,219 + BACOVA_02236 0.67 -0.9 16,219 + BACOVA_02236 0.67 -3.1 16,229 - BACOVA_02236 0.68 -1.6 16,241 - BACOVA_02236 0.69 -1.4 16,308 - BACOVA_02236 0.77 -1.3 16,445 - -1.6 16,445 - -1.3 16,496 + -1.6 16,530 - -2.7 16,530 - -1.6 16,530 - -0.9 16,545 + -1.0 16,555 + +0.7 16,600 + -1.6 16,723 - BACOVA_02237 0.12 +0.1 16,730 - BACOVA_02237 0.13 -0.9 16,807 + BACOVA_02237 0.19 -2.1 16,840 + BACOVA_02237 0.21 -2.6 16,987 + BACOVA_02237 0.32 -1.7 17,116 - BACOVA_02237 0.42 -1.6 17,177 - BACOVA_02237 0.46 -1.9 17,180 - BACOVA_02237 0.47 -2.6 17,207 - BACOVA_02237 0.49 -0.9 17,329 + BACOVA_02237 0.58 -0.3 17,330 - BACOVA_02237 0.58 -2.1 17,330 - BACOVA_02237 0.58 -2.1 17,525 - BACOVA_02237 0.72 -1.6 17,587 + BACOVA_02237 0.77 -0.9 17,709 - BACOVA_02237 0.86 -2.3 17,777 - -3.6 17,899 - -1.7 17,918 + -0.6 17,919 - -1.9 17,955 - -0.3 17,969 - -0.3 17,969 - -1.4 17,969 - -2.0 17,969 - -2.1 18,166 - BACOVA_02238 0.27 -0.3 18,196 - BACOVA_02238 0.30 -1.9 18,232 - BACOVA_02238 0.34 -0.3 18,252 - BACOVA_02238 0.36 -1.6 18,394 - BACOVA_02238 0.50 -1.6 18,410 - BACOVA_02238 0.51 -2.7 18,524 - BACOVA_02238 0.63 -0.3 18,525 + BACOVA_02238 0.63 -1.3 18,525 + BACOVA_02238 0.63 -2.1 18,526 - BACOVA_02238 0.63 -3.0 18,526 - BACOVA_02238 0.63 -2.6 18,556 - BACOVA_02238 0.66 -1.3 18,556 - BACOVA_02238 0.66 -2.3 18,695 - BACOVA_02238 0.80 -2.1 18,695 - BACOVA_02238 0.80 -0.9 18,734 - BACOVA_02238 0.84 -2.3 18,734 - BACOVA_02238 0.84 -3.6 18,740 + BACOVA_02238 0.85 -1.3 18,740 + BACOVA_02238 0.85 -2.6 18,741 - BACOVA_02238 0.85 -4.4 18,741 - BACOVA_02238 0.85 -1.7 18,741 - BACOVA_02238 0.85 -1.3 18,741 - BACOVA_02238 0.85 -0.9 18,848 - -1.3
Or see this region's nucleotide sequence