Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00898

Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00897 and BACOVA_00898 are separated by 2 nucleotidesBACOVA_00898 and BACOVA_00899 are separated by 19 nucleotides BACOVA_00897: BACOVA_00897 - polysaccharide biosynthesis protein, at 25,808 to 27,304 _00897 BACOVA_00898: BACOVA_00898 - hydrophobic domain protein, at 27,307 to 28,662 _00898 BACOVA_00899: BACOVA_00899 - hypothetical protein, at 28,682 to 30,823 _00899 Position (kb) 27 28 29Strain fitness (log2 ratio) -2 -1 0 1 2at 27.302 kb on + strandat 27.302 kb on + strandat 27.307 kb on - strandat 27.307 kb on - strandat 27.307 kb on - strandat 27.378 kb on + strandat 27.464 kb on + strand, within BACOVA_00898at 27.508 kb on - strand, within BACOVA_00898at 27.546 kb on + strand, within BACOVA_00898at 27.546 kb on + strand, within BACOVA_00898at 27.547 kb on - strand, within BACOVA_00898at 27.549 kb on + strand, within BACOVA_00898at 27.590 kb on + strand, within BACOVA_00898at 27.591 kb on - strand, within BACOVA_00898at 27.643 kb on - strand, within BACOVA_00898at 27.706 kb on - strand, within BACOVA_00898at 27.706 kb on - strand, within BACOVA_00898at 27.717 kb on + strand, within BACOVA_00898at 27.721 kb on + strand, within BACOVA_00898at 27.729 kb on - strand, within BACOVA_00898at 27.729 kb on - strand, within BACOVA_00898at 27.729 kb on - strand, within BACOVA_00898at 27.774 kb on + strand, within BACOVA_00898at 27.933 kb on + strand, within BACOVA_00898at 28.004 kb on + strand, within BACOVA_00898at 28.008 kb on + strand, within BACOVA_00898at 28.009 kb on - strand, within BACOVA_00898at 28.013 kb on - strand, within BACOVA_00898at 28.028 kb on + strand, within BACOVA_00898at 28.029 kb on - strand, within BACOVA_00898at 28.035 kb on + strand, within BACOVA_00898at 28.087 kb on + strand, within BACOVA_00898at 28.087 kb on + strand, within BACOVA_00898at 28.087 kb on + strand, within BACOVA_00898at 28.111 kb on - strand, within BACOVA_00898at 28.113 kb on - strand, within BACOVA_00898at 28.138 kb on - strand, within BACOVA_00898at 28.145 kb on + strand, within BACOVA_00898at 28.146 kb on - strand, within BACOVA_00898at 28.152 kb on + strand, within BACOVA_00898at 28.165 kb on + strand, within BACOVA_00898at 28.166 kb on - strand, within BACOVA_00898at 28.223 kb on + strand, within BACOVA_00898at 28.227 kb on + strand, within BACOVA_00898at 28.227 kb on + strand, within BACOVA_00898at 28.227 kb on + strand, within BACOVA_00898at 28.228 kb on - strand, within BACOVA_00898at 28.281 kb on - strand, within BACOVA_00898at 28.283 kb on + strand, within BACOVA_00898at 28.296 kb on - strand, within BACOVA_00898at 28.307 kb on + strand, within BACOVA_00898at 28.313 kb on + strand, within BACOVA_00898at 28.421 kb on - strand, within BACOVA_00898at 28.430 kb on - strand, within BACOVA_00898at 28.438 kb on - strand, within BACOVA_00898at 28.446 kb on + strand, within BACOVA_00898at 28.452 kb on - strand, within BACOVA_00898at 28.469 kb on + strand, within BACOVA_00898at 28.547 kb on + strandat 28.548 kb on - strandat 28.660 kb on + strandat 28.660 kb on + strandat 28.661 kb on - strandat 28.661 kb on - strandat 28.661 kb on - strandat 28.669 kb on + strandat 28.676 kb on - strandat 28.682 kb on - strandat 28.707 kb on + strandat 28.734 kb on + strandat 28.735 kb on - strandat 28.831 kb on + strandat 28.837 kb on - strandat 28.838 kb on + strandat 28.931 kb on - strand, within BACOVA_00899at 28.934 kb on - strand, within BACOVA_00899at 29.015 kb on - strand, within BACOVA_00899at 29.048 kb on + strand, within BACOVA_00899at 29.049 kb on - strand, within BACOVA_00899at 29.049 kb on - strand, within BACOVA_00899at 29.080 kb on + strand, within BACOVA_00899at 29.192 kb on - strand, within BACOVA_00899at 29.192 kb on - strand, within BACOVA_00899at 29.209 kb on - strand, within BACOVA_00899at 29.216 kb on + strand, within BACOVA_00899at 29.217 kb on - strand, within BACOVA_00899at 29.260 kb on + strand, within BACOVA_00899at 29.372 kb on + strand, within BACOVA_00899at 29.373 kb on - strand, within BACOVA_00899at 29.373 kb on - strand, within BACOVA_00899at 29.403 kb on - strand, within BACOVA_00899at 29.435 kb on + strand, within BACOVA_00899at 29.440 kb on - strand, within BACOVA_00899at 29.578 kb on - strand, within BACOVA_00899at 29.638 kb on + strand, within BACOVA_00899at 29.638 kb on + strand, within BACOVA_00899at 29.639 kb on - strand, within BACOVA_00899at 29.642 kb on + strand, within BACOVA_00899

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber 2.5 mg/ml (C)
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27,302 + +0.3
27,302 + -0.6
27,307 - +0.6
27,307 - -0.1
27,307 - -0.3
27,378 + -0.1
27,464 + BACOVA_00898 0.12 -0.1
27,508 - BACOVA_00898 0.15 +0.7
27,546 + BACOVA_00898 0.18 +0.7
27,546 + BACOVA_00898 0.18 -1.6
27,547 - BACOVA_00898 0.18 +1.0
27,549 + BACOVA_00898 0.18 -0.2
27,590 + BACOVA_00898 0.21 +0.0
27,591 - BACOVA_00898 0.21 +0.8
27,643 - BACOVA_00898 0.25 +0.4
27,706 - BACOVA_00898 0.29 -1.6
27,706 - BACOVA_00898 0.29 -1.0
27,717 + BACOVA_00898 0.30 -0.2
27,721 + BACOVA_00898 0.31 -0.8
27,729 - BACOVA_00898 0.31 +0.5
27,729 - BACOVA_00898 0.31 -1.0
27,729 - BACOVA_00898 0.31 -1.0
27,774 + BACOVA_00898 0.34 -1.3
27,933 + BACOVA_00898 0.46 +0.9
28,004 + BACOVA_00898 0.51 +0.0
28,008 + BACOVA_00898 0.52 +1.0
28,009 - BACOVA_00898 0.52 +0.0
28,013 - BACOVA_00898 0.52 -1.6
28,028 + BACOVA_00898 0.53 -0.6
28,029 - BACOVA_00898 0.53 -0.2
28,035 + BACOVA_00898 0.54 +0.2
28,087 + BACOVA_00898 0.58 -0.2
28,087 + BACOVA_00898 0.58 +1.7
28,087 + BACOVA_00898 0.58 +0.7
28,111 - BACOVA_00898 0.59 -0.6
28,113 - BACOVA_00898 0.59 +0.2
28,138 - BACOVA_00898 0.61 +0.7
28,145 + BACOVA_00898 0.62 -0.3
28,146 - BACOVA_00898 0.62 -0.1
28,152 + BACOVA_00898 0.62 -0.7
28,165 + BACOVA_00898 0.63 -1.4
28,166 - BACOVA_00898 0.63 -0.2
28,223 + BACOVA_00898 0.68 -0.3
28,227 + BACOVA_00898 0.68 -0.1
28,227 + BACOVA_00898 0.68 -0.6
28,227 + BACOVA_00898 0.68 -0.4
28,228 - BACOVA_00898 0.68 -0.2
28,281 - BACOVA_00898 0.72 -0.6
28,283 + BACOVA_00898 0.72 -0.1
28,296 - BACOVA_00898 0.73 +2.0
28,307 + BACOVA_00898 0.74 +0.4
28,313 + BACOVA_00898 0.74 -0.2
28,421 - BACOVA_00898 0.82 -0.9
28,430 - BACOVA_00898 0.83 +0.5
28,438 - BACOVA_00898 0.83 +0.6
28,446 + BACOVA_00898 0.84 +0.3
28,452 - BACOVA_00898 0.84 -0.5
28,469 + BACOVA_00898 0.86 -2.0
28,547 + +0.6
28,548 - -0.4
28,660 + -0.4
28,660 + -0.3
28,661 - -0.2
28,661 - +0.2
28,661 - -0.4
28,669 + +0.0
28,676 - -0.2
28,682 - +1.0
28,707 + +1.0
28,734 + -0.1
28,735 - -0.4
28,831 + +0.5
28,837 - -0.3
28,838 + +0.0
28,931 - BACOVA_00899 0.12 -1.4
28,934 - BACOVA_00899 0.12 +0.3
29,015 - BACOVA_00899 0.16 -0.1
29,048 + BACOVA_00899 0.17 +0.3
29,049 - BACOVA_00899 0.17 -0.4
29,049 - BACOVA_00899 0.17 -0.2
29,080 + BACOVA_00899 0.19 +0.3
29,192 - BACOVA_00899 0.24 +0.2
29,192 - BACOVA_00899 0.24 +0.5
29,209 - BACOVA_00899 0.25 -0.6
29,216 + BACOVA_00899 0.25 -0.2
29,217 - BACOVA_00899 0.25 +0.2
29,260 + BACOVA_00899 0.27 +0.1
29,372 + BACOVA_00899 0.32 -0.8
29,373 - BACOVA_00899 0.32 +0.2
29,373 - BACOVA_00899 0.32 -0.3
29,403 - BACOVA_00899 0.34 -0.1
29,435 + BACOVA_00899 0.35 -1.2
29,440 - BACOVA_00899 0.35 +0.9
29,578 - BACOVA_00899 0.42 +0.6
29,638 + BACOVA_00899 0.45 +0.9
29,638 + BACOVA_00899 0.45 -0.5
29,639 - BACOVA_00899 0.45 -1.1
29,642 + BACOVA_00899 0.45 +0.3

Or see this region's nucleotide sequence