Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00131 and BACOVA_00132 are separated by 154 nucleotides BACOVA_00132 and BACOVA_00133 are separated by 248 nucleotides BACOVA_00133 and BACOVA_00034 are separated by 432 nucleotides
BACOVA_00131: BACOVA_00131 - transporter, MotA/TolQ/ExbB proton channel family protein, at 176,704 to 177,501
_00131
BACOVA_00132: BACOVA_00132 - hypothetical protein, at 177,656 to 178,093
_00132
BACOVA_00133: BACOVA_00133 - 5S ribosomal RNA, at 178,342 to 178,452
_00133
BACOVA_00034: BACOVA_00034 - hypothetical protein, at 178,885 to 179,031
_00034
Position (kb) 178
179 Strain fitness (log2 ratio) -2
-1
0
1
2 at 177.382 kb on - strand, within BACOVA_00131 at 177.400 kb on + strand, within BACOVA_00131 at 177.417 kb on + strand, within BACOVA_00131 at 177.421 kb on + strand, within BACOVA_00131 at 177.422 kb on - strand at 177.427 kb on + strand at 177.434 kb on - strand at 177.448 kb on + strand at 177.473 kb on - strand at 177.518 kb on - strand at 177.535 kb on + strand at 177.535 kb on + strand at 177.539 kb on + strand at 177.539 kb on + strand at 177.575 kb on + strand at 177.591 kb on + strand at 177.617 kb on - strand at 177.623 kb on + strand at 177.623 kb on + strand at 177.658 kb on - strand at 177.661 kb on + strand at 177.661 kb on + strand at 177.662 kb on - strand at 177.662 kb on - strand at 177.675 kb on - strand at 177.687 kb on + strand at 177.687 kb on + strand at 177.704 kb on - strand, within BACOVA_00132 at 177.704 kb on - strand, within BACOVA_00132 at 177.711 kb on + strand, within BACOVA_00132 at 177.711 kb on + strand, within BACOVA_00132 at 177.711 kb on + strand, within BACOVA_00132 at 177.743 kb on - strand, within BACOVA_00132 at 177.753 kb on - strand, within BACOVA_00132 at 177.759 kb on - strand, within BACOVA_00132 at 177.773 kb on + strand, within BACOVA_00132 at 177.774 kb on - strand, within BACOVA_00132 at 177.829 kb on + strand, within BACOVA_00132 at 177.844 kb on + strand, within BACOVA_00132 at 177.845 kb on - strand, within BACOVA_00132 at 177.871 kb on + strand, within BACOVA_00132 at 177.872 kb on - strand, within BACOVA_00132 at 177.918 kb on + strand, within BACOVA_00132 at 177.918 kb on + strand, within BACOVA_00132 at 177.919 kb on - strand, within BACOVA_00132 at 177.919 kb on - strand, within BACOVA_00132 at 177.923 kb on - strand, within BACOVA_00132 at 177.938 kb on + strand, within BACOVA_00132 at 177.939 kb on - strand, within BACOVA_00132 at 178.047 kb on - strand, within BACOVA_00132 at 178.047 kb on - strand, within BACOVA_00132 at 178.047 kb on - strand, within BACOVA_00132 at 178.071 kb on - strand at 178.097 kb on - strand at 178.124 kb on - strand at 178.155 kb on - strand at 178.156 kb on + strand at 178.157 kb on - strand at 178.157 kb on - strand at 178.157 kb on - strand at 178.189 kb on - strand at 178.195 kb on + strand at 178.205 kb on - strand at 178.223 kb on - strand at 178.250 kb on - strand at 178.280 kb on + strand at 178.280 kb on + strand at 178.281 kb on - strand at 178.281 kb on - strand at 178.315 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber 2.5 mg/ml (C) remove 177,382 - BACOVA_00131 0.85 -0.0 177,400 + BACOVA_00131 0.87 +0.6 177,417 + BACOVA_00131 0.89 +0.5 177,421 + BACOVA_00131 0.90 -0.4 177,422 - +0.7 177,427 + -2.5 177,434 - -0.2 177,448 + +1.1 177,473 - -0.2 177,518 - -1.1 177,535 + +0.5 177,535 + +0.0 177,539 + +2.0 177,539 + +0.5 177,575 + -1.6 177,591 + -0.5 177,617 - -1.0 177,623 + +0.1 177,623 + -1.0 177,658 - -0.5 177,661 + +0.4 177,661 + +0.6 177,662 - -2.3 177,662 - -1.0 177,675 - -0.8 177,687 + +0.2 177,687 + +0.3 177,704 - BACOVA_00132 0.11 -2.7 177,704 - BACOVA_00132 0.11 +0.2 177,711 + BACOVA_00132 0.13 -0.7 177,711 + BACOVA_00132 0.13 -1.3 177,711 + BACOVA_00132 0.13 -1.4 177,743 - BACOVA_00132 0.20 +0.4 177,753 - BACOVA_00132 0.22 -0.7 177,759 - BACOVA_00132 0.24 -1.0 177,773 + BACOVA_00132 0.27 -2.6 177,774 - BACOVA_00132 0.27 +0.5 177,829 + BACOVA_00132 0.39 +0.6 177,844 + BACOVA_00132 0.43 +0.2 177,845 - BACOVA_00132 0.43 +0.7 177,871 + BACOVA_00132 0.49 +0.3 177,872 - BACOVA_00132 0.49 -0.5 177,918 + BACOVA_00132 0.60 +0.4 177,918 + BACOVA_00132 0.60 -1.4 177,919 - BACOVA_00132 0.60 -0.6 177,919 - BACOVA_00132 0.60 -0.4 177,923 - BACOVA_00132 0.61 -0.7 177,938 + BACOVA_00132 0.64 -1.4 177,939 - BACOVA_00132 0.65 +0.1 178,047 - BACOVA_00132 0.89 -0.2 178,047 - BACOVA_00132 0.89 -0.9 178,047 - BACOVA_00132 0.89 +0.1 178,071 - -0.3 178,097 - -0.6 178,124 - -0.5 178,155 - +0.4 178,156 + +0.4 178,157 - -0.9 178,157 - +0.1 178,157 - +0.7 178,189 - +0.2 178,195 + -1.6 178,205 - +0.2 178,223 - +0.1 178,250 - -0.2 178,280 + +1.5 178,280 + +0.2 178,281 - -0.5 178,281 - +0.0 178,315 - -0.6
Or see this region's nucleotide sequence