Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00130

Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00128 and BACOVA_00129 are separated by 26 nucleotidesBACOVA_00129 and BACOVA_00130 are separated by 15 nucleotidesBACOVA_00130 and BACOVA_00131 are separated by 33 nucleotidesBACOVA_00131 and BACOVA_00132 are separated by 154 nucleotides BACOVA_00128: BACOVA_00128 - TonB-dependent receptor, at 174,554 to 175,369 _00128 BACOVA_00129: BACOVA_00129 - hypothetical protein, at 175,396 to 176,049 _00129 BACOVA_00130: BACOVA_00130 - hypothetical protein, at 176,065 to 176,670 _00130 BACOVA_00131: BACOVA_00131 - transporter, MotA/TolQ/ExbB proton channel family protein, at 176,704 to 177,501 _00131 BACOVA_00132: BACOVA_00132 - hypothetical protein, at 177,656 to 178,093 _00132 Position (kb) 176 177Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 175.153 kb on + strand, within BACOVA_00128at 175.153 kb on + strand, within BACOVA_00128at 175.154 kb on - strand, within BACOVA_00128at 175.154 kb on - strand, within BACOVA_00128at 175.158 kb on - strand, within BACOVA_00128at 175.207 kb on + strand, within BACOVA_00128at 175.217 kb on - strand, within BACOVA_00128at 175.233 kb on - strand, within BACOVA_00128at 175.253 kb on - strand, within BACOVA_00128at 175.261 kb on + strand, within BACOVA_00128at 175.261 kb on + strand, within BACOVA_00128at 175.291 kb on + strandat 175.358 kb on + strandat 175.372 kb on + strandat 175.392 kb on + strandat 175.392 kb on + strandat 175.401 kb on + strandat 175.440 kb on - strandat 175.488 kb on - strand, within BACOVA_00129at 175.491 kb on + strand, within BACOVA_00129at 175.491 kb on + strand, within BACOVA_00129at 175.492 kb on - strand, within BACOVA_00129at 175.492 kb on - strand, within BACOVA_00129at 175.501 kb on - strand, within BACOVA_00129at 175.501 kb on - strand, within BACOVA_00129at 175.501 kb on - strand, within BACOVA_00129at 175.501 kb on - strand, within BACOVA_00129at 175.540 kb on - strand, within BACOVA_00129at 175.541 kb on + strand, within BACOVA_00129at 175.541 kb on + strand, within BACOVA_00129at 175.541 kb on + strand, within BACOVA_00129at 175.541 kb on + strand, within BACOVA_00129at 175.542 kb on - strand, within BACOVA_00129at 175.542 kb on - strand, within BACOVA_00129at 175.597 kb on + strand, within BACOVA_00129at 175.617 kb on + strand, within BACOVA_00129at 175.638 kb on + strand, within BACOVA_00129at 175.639 kb on - strand, within BACOVA_00129at 175.639 kb on - strand, within BACOVA_00129at 175.669 kb on + strand, within BACOVA_00129at 175.752 kb on + strand, within BACOVA_00129at 175.753 kb on - strand, within BACOVA_00129at 175.753 kb on - strand, within BACOVA_00129at 175.754 kb on + strand, within BACOVA_00129at 175.755 kb on - strand, within BACOVA_00129at 175.763 kb on + strand, within BACOVA_00129at 175.767 kb on + strand, within BACOVA_00129at 175.767 kb on + strand, within BACOVA_00129at 175.768 kb on - strand, within BACOVA_00129at 175.787 kb on + strand, within BACOVA_00129at 175.798 kb on - strand, within BACOVA_00129at 175.814 kb on - strand, within BACOVA_00129at 175.819 kb on - strand, within BACOVA_00129at 175.819 kb on - strand, within BACOVA_00129at 175.819 kb on - strand, within BACOVA_00129at 175.842 kb on + strand, within BACOVA_00129at 175.843 kb on - strand, within BACOVA_00129at 175.843 kb on - strand, within BACOVA_00129at 175.861 kb on + strand, within BACOVA_00129at 175.863 kb on + strand, within BACOVA_00129at 175.864 kb on - strand, within BACOVA_00129at 175.876 kb on - strand, within BACOVA_00129at 175.888 kb on + strand, within BACOVA_00129at 175.889 kb on - strand, within BACOVA_00129at 175.971 kb on + strand, within BACOVA_00129at 175.972 kb on - strand, within BACOVA_00129at 176.052 kb on + strandat 176.094 kb on + strandat 176.190 kb on + strand, within BACOVA_00130at 176.190 kb on + strand, within BACOVA_00130at 176.191 kb on - strand, within BACOVA_00130at 176.212 kb on - strand, within BACOVA_00130at 176.220 kb on + strand, within BACOVA_00130at 176.220 kb on + strand, within BACOVA_00130at 176.235 kb on + strand, within BACOVA_00130at 176.265 kb on + strand, within BACOVA_00130at 176.335 kb on - strand, within BACOVA_00130at 176.338 kb on + strand, within BACOVA_00130at 176.339 kb on - strand, within BACOVA_00130at 176.361 kb on + strand, within BACOVA_00130at 176.392 kb on - strand, within BACOVA_00130at 176.400 kb on - strand, within BACOVA_00130at 176.434 kb on - strand, within BACOVA_00130at 176.434 kb on - strand, within BACOVA_00130at 176.458 kb on - strand, within BACOVA_00130at 176.461 kb on + strand, within BACOVA_00130at 176.495 kb on - strand, within BACOVA_00130at 176.548 kb on + strand, within BACOVA_00130at 176.602 kb on + strand, within BACOVA_00130at 176.603 kb on - strand, within BACOVA_00130at 176.603 kb on - strand, within BACOVA_00130at 176.603 kb on - strand, within BACOVA_00130at 176.619 kb on + strandat 176.628 kb on + strandat 176.628 kb on + strandat 176.628 kb on + strandat 176.632 kb on + strandat 176.633 kb on - strandat 176.681 kb on - strandat 176.706 kb on - strandat 176.712 kb on + strandat 176.789 kb on + strand, within BACOVA_00131at 176.789 kb on + strand, within BACOVA_00131at 176.790 kb on - strand, within BACOVA_00131at 176.795 kb on + strand, within BACOVA_00131at 176.796 kb on - strand, within BACOVA_00131at 176.926 kb on - strand, within BACOVA_00131at 176.968 kb on - strand, within BACOVA_00131at 176.968 kb on - strand, within BACOVA_00131at 176.974 kb on - strand, within BACOVA_00131at 176.977 kb on - strand, within BACOVA_00131at 177.006 kb on + strand, within BACOVA_00131at 177.070 kb on - strand, within BACOVA_00131at 177.102 kb on - strand, within BACOVA_00131at 177.105 kb on + strand, within BACOVA_00131at 177.106 kb on - strand, within BACOVA_00131at 177.122 kb on - strand, within BACOVA_00131at 177.125 kb on - strand, within BACOVA_00131at 177.211 kb on + strand, within BACOVA_00131at 177.219 kb on + strand, within BACOVA_00131at 177.307 kb on - strand, within BACOVA_00131at 177.309 kb on + strand, within BACOVA_00131at 177.310 kb on - strand, within BACOVA_00131at 177.314 kb on - strand, within BACOVA_00131at 177.322 kb on - strand, within BACOVA_00131at 177.322 kb on - strand, within BACOVA_00131at 177.332 kb on + strand, within BACOVA_00131at 177.336 kb on + strand, within BACOVA_00131at 177.382 kb on - strand, within BACOVA_00131at 177.400 kb on + strand, within BACOVA_00131at 177.417 kb on + strand, within BACOVA_00131at 177.421 kb on + strand, within BACOVA_00131at 177.422 kb on - strandat 177.427 kb on + strandat 177.434 kb on - strandat 177.448 kb on + strandat 177.473 kb on - strandat 177.518 kb on - strandat 177.535 kb on + strandat 177.535 kb on + strandat 177.539 kb on + strandat 177.539 kb on + strandat 177.575 kb on + strandat 177.591 kb on + strandat 177.617 kb on - strandat 177.623 kb on + strandat 177.623 kb on + strandat 177.658 kb on - strandat 177.661 kb on + strandat 177.661 kb on + strandat 177.662 kb on - strandat 177.662 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber 2.5 mg/ml (C)
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175,153 + BACOVA_00128 0.73 -1.1
175,153 + BACOVA_00128 0.73 -0.6
175,154 - BACOVA_00128 0.74 -0.4
175,154 - BACOVA_00128 0.74 -1.2
175,158 - BACOVA_00128 0.74 -1.6
175,207 + BACOVA_00128 0.80 -0.6
175,217 - BACOVA_00128 0.81 -0.4
175,233 - BACOVA_00128 0.83 -2.0
175,253 - BACOVA_00128 0.86 -0.9
175,261 + BACOVA_00128 0.87 +0.3
175,261 + BACOVA_00128 0.87 -0.1
175,291 + -0.1
175,358 + +0.4
175,372 + +0.1
175,392 + -0.4
175,392 + +0.3
175,401 + -1.4
175,440 - -0.1
175,488 - BACOVA_00129 0.14 -1.3
175,491 + BACOVA_00129 0.15 -0.8
175,491 + BACOVA_00129 0.15 +0.3
175,492 - BACOVA_00129 0.15 -0.3
175,492 - BACOVA_00129 0.15 -1.1
175,501 - BACOVA_00129 0.16 -2.1
175,501 - BACOVA_00129 0.16 -1.5
175,501 - BACOVA_00129 0.16 +0.4
175,501 - BACOVA_00129 0.16 -1.2
175,540 - BACOVA_00129 0.22 -0.9
175,541 + BACOVA_00129 0.22 +0.6
175,541 + BACOVA_00129 0.22 +0.3
175,541 + BACOVA_00129 0.22 +0.4
175,541 + BACOVA_00129 0.22 +1.4
175,542 - BACOVA_00129 0.22 -0.8
175,542 - BACOVA_00129 0.22 -1.1
175,597 + BACOVA_00129 0.31 +0.4
175,617 + BACOVA_00129 0.34 +0.2
175,638 + BACOVA_00129 0.37 -0.1
175,639 - BACOVA_00129 0.37 -2.1
175,639 - BACOVA_00129 0.37 -3.5
175,669 + BACOVA_00129 0.42 -0.2
175,752 + BACOVA_00129 0.54 -0.2
175,753 - BACOVA_00129 0.55 -1.2
175,753 - BACOVA_00129 0.55 -1.1
175,754 + BACOVA_00129 0.55 +1.0
175,755 - BACOVA_00129 0.55 -0.6
175,763 + BACOVA_00129 0.56 -0.2
175,767 + BACOVA_00129 0.57 -0.3
175,767 + BACOVA_00129 0.57 +0.2
175,768 - BACOVA_00129 0.57 -1.7
175,787 + BACOVA_00129 0.60 +0.5
175,798 - BACOVA_00129 0.61 -0.6
175,814 - BACOVA_00129 0.64 -0.6
175,819 - BACOVA_00129 0.65 -0.9
175,819 - BACOVA_00129 0.65 -0.8
175,819 - BACOVA_00129 0.65 -1.3
175,842 + BACOVA_00129 0.68 +0.5
175,843 - BACOVA_00129 0.68 -0.4
175,843 - BACOVA_00129 0.68 -1.2
175,861 + BACOVA_00129 0.71 -0.1
175,863 + BACOVA_00129 0.71 -0.5
175,864 - BACOVA_00129 0.72 -1.1
175,876 - BACOVA_00129 0.73 -0.1
175,888 + BACOVA_00129 0.75 +0.3
175,889 - BACOVA_00129 0.75 -1.8
175,971 + BACOVA_00129 0.88 -1.1
175,972 - BACOVA_00129 0.88 +0.9
176,052 + -0.1
176,094 + -0.0
176,190 + BACOVA_00130 0.21 -0.1
176,190 + BACOVA_00130 0.21 -0.5
176,191 - BACOVA_00130 0.21 -0.7
176,212 - BACOVA_00130 0.24 -1.6
176,220 + BACOVA_00130 0.26 -0.3
176,220 + BACOVA_00130 0.26 -0.0
176,235 + BACOVA_00130 0.28 -1.2
176,265 + BACOVA_00130 0.33 -0.5
176,335 - BACOVA_00130 0.45 +0.1
176,338 + BACOVA_00130 0.45 -0.0
176,339 - BACOVA_00130 0.45 -0.9
176,361 + BACOVA_00130 0.49 -0.7
176,392 - BACOVA_00130 0.54 -1.5
176,400 - BACOVA_00130 0.55 -0.9
176,434 - BACOVA_00130 0.61 -1.2
176,434 - BACOVA_00130 0.61 -0.2
176,458 - BACOVA_00130 0.65 +0.2
176,461 + BACOVA_00130 0.65 +0.4
176,495 - BACOVA_00130 0.71 -1.1
176,548 + BACOVA_00130 0.80 -0.6
176,602 + BACOVA_00130 0.89 +0.5
176,603 - BACOVA_00130 0.89 -0.6
176,603 - BACOVA_00130 0.89 -0.6
176,603 - BACOVA_00130 0.89 -1.6
176,619 + -1.1
176,628 + -0.1
176,628 + -1.1
176,628 + +0.9
176,632 + -1.4
176,633 - -0.2
176,681 - -1.6
176,706 - -1.0
176,712 + +0.9
176,789 + BACOVA_00131 0.11 -1.5
176,789 + BACOVA_00131 0.11 +1.5
176,790 - BACOVA_00131 0.11 -1.0
176,795 + BACOVA_00131 0.11 -0.2
176,796 - BACOVA_00131 0.12 -0.8
176,926 - BACOVA_00131 0.28 -0.3
176,968 - BACOVA_00131 0.33 +0.1
176,968 - BACOVA_00131 0.33 -0.6
176,974 - BACOVA_00131 0.34 +0.2
176,977 - BACOVA_00131 0.34 -0.7
177,006 + BACOVA_00131 0.38 +0.3
177,070 - BACOVA_00131 0.46 -2.7
177,102 - BACOVA_00131 0.50 -0.6
177,105 + BACOVA_00131 0.50 -0.4
177,106 - BACOVA_00131 0.50 -1.0
177,122 - BACOVA_00131 0.52 +0.4
177,125 - BACOVA_00131 0.53 +0.0
177,211 + BACOVA_00131 0.64 -0.5
177,219 + BACOVA_00131 0.65 -0.0
177,307 - BACOVA_00131 0.76 -0.0
177,309 + BACOVA_00131 0.76 -0.0
177,310 - BACOVA_00131 0.76 +1.0
177,314 - BACOVA_00131 0.76 -1.0
177,322 - BACOVA_00131 0.77 -0.2
177,322 - BACOVA_00131 0.77 -0.2
177,332 + BACOVA_00131 0.79 -1.0
177,336 + BACOVA_00131 0.79 -0.2
177,382 - BACOVA_00131 0.85 -0.0
177,400 + BACOVA_00131 0.87 +0.6
177,417 + BACOVA_00131 0.89 +0.5
177,421 + BACOVA_00131 0.90 -0.4
177,422 - +0.7
177,427 + -2.5
177,434 - -0.2
177,448 + +1.1
177,473 - -0.2
177,518 - -1.1
177,535 + +0.5
177,535 + +0.0
177,539 + +2.0
177,539 + +0.5
177,575 + -1.6
177,591 + -0.5
177,617 - -1.0
177,623 + +0.1
177,623 + -1.0
177,658 - -0.5
177,661 + +0.4
177,661 + +0.6
177,662 - -2.3
177,662 - -1.0

Or see this region's nucleotide sequence