Experiment: b-Mannan borohydrate reduced carob seed 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05307 and BACOVA_05308 are separated by 120 nucleotides BACOVA_05308 and BACOVA_05309 are separated by 115 nucleotides BACOVA_05309 and BACOVA_05310 are separated by 236 nucleotides BACOVA_05310 and BACOVA_05311 are separated by 31 nucleotides
BACOVA_05307: BACOVA_05307 - hypothetical protein, at 796,998 to 797,525
_05307
BACOVA_05308: BACOVA_05308 - MaoC-like protein, at 797,646 to 798,110
_05308
BACOVA_05309: BACOVA_05309 - linear amide C-N hydrolase, choloylglycine hydrolase family protein, at 798,226 to 799,170
_05309
BACOVA_05310: BACOVA_05310 - MarC family integral membrane protein, at 799,407 to 800,039
_05310
BACOVA_05311: BACOVA_05311 - hypothetical protein, at 800,071 to 800,595
_05311
Position (kb) 798
799
800 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 797.277 kb on + strand, within BACOVA_05307 at 797.300 kb on + strand, within BACOVA_05307 at 797.300 kb on + strand, within BACOVA_05307 at 797.307 kb on + strand, within BACOVA_05307 at 797.308 kb on - strand, within BACOVA_05307 at 797.316 kb on + strand, within BACOVA_05307 at 797.317 kb on - strand, within BACOVA_05307 at 797.403 kb on - strand, within BACOVA_05307 at 797.482 kb on - strand at 797.534 kb on + strand at 797.535 kb on - strand at 797.538 kb on + strand at 797.538 kb on + strand at 797.556 kb on + strand at 797.576 kb on + strand at 797.577 kb on - strand at 797.617 kb on - strand at 797.617 kb on - strand at 797.620 kb on + strand at 797.621 kb on - strand at 797.692 kb on + strand at 797.692 kb on + strand at 797.704 kb on + strand, within BACOVA_05308 at 797.742 kb on - strand, within BACOVA_05308 at 797.788 kb on + strand, within BACOVA_05308 at 797.789 kb on - strand, within BACOVA_05308 at 797.809 kb on + strand, within BACOVA_05308 at 797.810 kb on - strand, within BACOVA_05308 at 797.813 kb on + strand, within BACOVA_05308 at 797.826 kb on - strand, within BACOVA_05308 at 797.826 kb on - strand, within BACOVA_05308 at 797.869 kb on - strand, within BACOVA_05308 at 797.894 kb on - strand, within BACOVA_05308 at 797.897 kb on + strand, within BACOVA_05308 at 797.898 kb on - strand, within BACOVA_05308 at 797.919 kb on + strand, within BACOVA_05308 at 797.920 kb on - strand, within BACOVA_05308 at 797.920 kb on - strand, within BACOVA_05308 at 797.954 kb on - strand, within BACOVA_05308 at 797.984 kb on + strand, within BACOVA_05308 at 798.088 kb on + strand at 798.089 kb on - strand at 798.096 kb on + strand at 798.159 kb on - strand at 798.313 kb on - strand at 798.316 kb on + strand at 798.316 kb on + strand at 798.317 kb on - strand at 798.375 kb on + strand, within BACOVA_05309 at 798.375 kb on + strand, within BACOVA_05309 at 798.379 kb on - strand, within BACOVA_05309 at 798.405 kb on - strand, within BACOVA_05309 at 798.482 kb on + strand, within BACOVA_05309 at 798.496 kb on - strand, within BACOVA_05309 at 798.514 kb on + strand, within BACOVA_05309 at 798.529 kb on + strand, within BACOVA_05309 at 798.529 kb on + strand, within BACOVA_05309 at 798.542 kb on + strand, within BACOVA_05309 at 798.671 kb on + strand, within BACOVA_05309 at 798.671 kb on + strand, within BACOVA_05309 at 798.671 kb on + strand, within BACOVA_05309 at 798.671 kb on + strand, within BACOVA_05309 at 798.735 kb on + strand, within BACOVA_05309 at 798.736 kb on - strand, within BACOVA_05309 at 798.736 kb on - strand, within BACOVA_05309 at 798.737 kb on + strand, within BACOVA_05309 at 798.826 kb on + strand, within BACOVA_05309 at 798.891 kb on + strand, within BACOVA_05309 at 798.892 kb on - strand, within BACOVA_05309 at 798.892 kb on - strand, within BACOVA_05309 at 798.893 kb on + strand, within BACOVA_05309 at 798.894 kb on - strand, within BACOVA_05309 at 798.894 kb on - strand, within BACOVA_05309 at 798.968 kb on - strand, within BACOVA_05309 at 799.046 kb on + strand, within BACOVA_05309 at 799.111 kb on + strand at 799.111 kb on + strand at 799.112 kb on - strand at 799.150 kb on - strand at 799.220 kb on - strand at 799.234 kb on + strand at 799.235 kb on - strand at 799.235 kb on - strand at 799.236 kb on + strand at 799.236 kb on + strand at 799.237 kb on - strand at 799.254 kb on + strand at 799.255 kb on - strand at 799.314 kb on + strand at 799.315 kb on - strand at 799.325 kb on + strand at 799.326 kb on - strand at 799.330 kb on - strand at 799.343 kb on - strand at 799.343 kb on - strand at 799.343 kb on - strand at 799.361 kb on + strand at 799.361 kb on + strand at 799.362 kb on - strand at 799.362 kb on - strand at 799.364 kb on + strand at 799.373 kb on - strand at 799.373 kb on - strand at 799.426 kb on + strand at 799.524 kb on - strand, within BACOVA_05310 at 799.626 kb on - strand, within BACOVA_05310 at 799.667 kb on + strand, within BACOVA_05310 at 799.749 kb on - strand, within BACOVA_05310 at 799.770 kb on - strand, within BACOVA_05310 at 799.778 kb on + strand, within BACOVA_05310 at 799.860 kb on - strand, within BACOVA_05310 at 799.862 kb on + strand, within BACOVA_05310 at 799.869 kb on - strand, within BACOVA_05310 at 799.888 kb on + strand, within BACOVA_05310 at 799.953 kb on - strand, within BACOVA_05310 at 800.006 kb on + strand at 800.006 kb on + strand at 800.006 kb on + strand at 800.006 kb on + strand at 800.006 kb on + strand at 800.007 kb on - strand at 800.007 kb on - strand at 800.007 kb on - strand at 800.007 kb on - strand at 800.007 kb on - strand at 800.007 kb on - strand at 800.007 kb on - strand at 800.008 kb on + strand at 800.018 kb on - strand at 800.033 kb on - strand at 800.038 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction b-Mannan borohydrate reduced carob seed 2.5 mg/ml (C) remove 797,277 + BACOVA_05307 0.53 +2.4 797,300 + BACOVA_05307 0.57 -1.2 797,300 + BACOVA_05307 0.57 -0.2 797,307 + BACOVA_05307 0.59 +0.6 797,308 - BACOVA_05307 0.59 -0.7 797,316 + BACOVA_05307 0.60 +0.9 797,317 - BACOVA_05307 0.60 -1.4 797,403 - BACOVA_05307 0.77 -1.0 797,482 - +0.4 797,534 + -0.8 797,535 - -1.2 797,538 + +0.6 797,538 + +0.4 797,556 + -0.8 797,576 + +0.6 797,577 - +0.6 797,617 - +2.0 797,617 - -1.0 797,620 + +0.5 797,621 - -0.4 797,692 + +1.4 797,692 + -1.4 797,704 + BACOVA_05308 0.12 +0.7 797,742 - BACOVA_05308 0.21 -1.6 797,788 + BACOVA_05308 0.31 +0.4 797,789 - BACOVA_05308 0.31 +0.8 797,809 + BACOVA_05308 0.35 -0.8 797,810 - BACOVA_05308 0.35 +1.4 797,813 + BACOVA_05308 0.36 -2.4 797,826 - BACOVA_05308 0.39 +0.4 797,826 - BACOVA_05308 0.39 -0.0 797,869 - BACOVA_05308 0.48 -0.2 797,894 - BACOVA_05308 0.53 -0.4 797,897 + BACOVA_05308 0.54 -1.2 797,898 - BACOVA_05308 0.54 -0.2 797,919 + BACOVA_05308 0.59 -1.3 797,920 - BACOVA_05308 0.59 +3.1 797,920 - BACOVA_05308 0.59 +0.1 797,954 - BACOVA_05308 0.66 -1.0 797,984 + BACOVA_05308 0.73 +1.9 798,088 + -0.3 798,089 - -0.4 798,096 + -0.2 798,159 - +0.9 798,313 - -0.2 798,316 + -0.9 798,316 + -0.6 798,317 - -1.2 798,375 + BACOVA_05309 0.16 -0.2 798,375 + BACOVA_05309 0.16 -0.5 798,379 - BACOVA_05309 0.16 -0.6 798,405 - BACOVA_05309 0.19 +0.1 798,482 + BACOVA_05309 0.27 -0.8 798,496 - BACOVA_05309 0.29 +1.0 798,514 + BACOVA_05309 0.30 +0.3 798,529 + BACOVA_05309 0.32 +0.3 798,529 + BACOVA_05309 0.32 -0.5 798,542 + BACOVA_05309 0.33 +0.1 798,671 + BACOVA_05309 0.47 +0.4 798,671 + BACOVA_05309 0.47 -1.0 798,671 + BACOVA_05309 0.47 +0.9 798,671 + BACOVA_05309 0.47 -0.2 798,735 + BACOVA_05309 0.54 +1.0 798,736 - BACOVA_05309 0.54 +0.0 798,736 - BACOVA_05309 0.54 -1.0 798,737 + BACOVA_05309 0.54 -0.3 798,826 + BACOVA_05309 0.63 +1.2 798,891 + BACOVA_05309 0.70 -1.4 798,892 - BACOVA_05309 0.70 -1.8 798,892 - BACOVA_05309 0.70 -1.6 798,893 + BACOVA_05309 0.71 +1.1 798,894 - BACOVA_05309 0.71 -0.9 798,894 - BACOVA_05309 0.71 -1.0 798,968 - BACOVA_05309 0.79 -0.1 799,046 + BACOVA_05309 0.87 +1.1 799,111 + -1.0 799,111 + -1.0 799,112 - +0.4 799,150 - +0.1 799,220 - -0.5 799,234 + +0.4 799,235 - -1.4 799,235 - -0.3 799,236 + +0.0 799,236 + +0.6 799,237 - +1.2 799,254 + -1.1 799,255 - +0.6 799,314 + -0.4 799,315 - -0.1 799,325 + -1.6 799,326 - -0.6 799,330 - -0.7 799,343 - -1.1 799,343 - -0.4 799,343 - -0.4 799,361 + +0.6 799,361 + -0.9 799,362 - +1.4 799,362 - +0.8 799,364 + -0.2 799,373 - +0.5 799,373 - +0.1 799,426 + +0.4 799,524 - BACOVA_05310 0.18 +0.4 799,626 - BACOVA_05310 0.35 -1.0 799,667 + BACOVA_05310 0.41 -0.0 799,749 - BACOVA_05310 0.54 -2.5 799,770 - BACOVA_05310 0.57 -3.0 799,778 + BACOVA_05310 0.59 +0.1 799,860 - BACOVA_05310 0.72 -0.6 799,862 + BACOVA_05310 0.72 -0.2 799,869 - BACOVA_05310 0.73 -0.4 799,888 + BACOVA_05310 0.76 -0.5 799,953 - BACOVA_05310 0.86 -0.1 800,006 + -1.4 800,006 + -0.2 800,006 + +0.4 800,006 + +0.0 800,006 + -0.3 800,007 - +0.4 800,007 - -2.1 800,007 - +3.2 800,007 - +1.1 800,007 - -0.8 800,007 - -0.6 800,007 - +2.4 800,008 + +1.1 800,018 - -1.0 800,033 - +0.8 800,038 - +0.7
Or see this region's nucleotide sequence