Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04907

Experiment: b-Mannan borohydrate reduced carob seed 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04906 and BACOVA_04907 are separated by 31 nucleotidesBACOVA_04907 and BACOVA_04908 are separated by 93 nucleotides BACOVA_04906: BACOVA_04906 - hypothetical protein, at 309,646 to 311,307 _04906 BACOVA_04907: BACOVA_04907 - hypothetical protein, at 311,339 to 312,922 _04907 BACOVA_04908: BACOVA_04908 - Pectinesterase, at 313,016 to 314,644 _04908 Position (kb) 311 312 313Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 310.365 kb on + strand, within BACOVA_04906at 310.397 kb on + strand, within BACOVA_04906at 310.398 kb on - strand, within BACOVA_04906at 310.398 kb on - strand, within BACOVA_04906at 310.439 kb on + strand, within BACOVA_04906at 310.517 kb on - strand, within BACOVA_04906at 310.517 kb on - strand, within BACOVA_04906at 310.521 kb on + strand, within BACOVA_04906at 310.521 kb on + strand, within BACOVA_04906at 310.521 kb on + strand, within BACOVA_04906at 310.522 kb on - strand, within BACOVA_04906at 310.522 kb on - strand, within BACOVA_04906at 310.522 kb on - strand, within BACOVA_04906at 310.524 kb on + strand, within BACOVA_04906at 310.524 kb on + strand, within BACOVA_04906at 310.525 kb on - strand, within BACOVA_04906at 310.576 kb on - strand, within BACOVA_04906at 310.592 kb on + strand, within BACOVA_04906at 310.658 kb on - strand, within BACOVA_04906at 310.687 kb on + strand, within BACOVA_04906at 310.687 kb on + strand, within BACOVA_04906at 310.688 kb on - strand, within BACOVA_04906at 310.699 kb on + strand, within BACOVA_04906at 310.699 kb on + strand, within BACOVA_04906at 310.699 kb on + strand, within BACOVA_04906at 310.700 kb on - strand, within BACOVA_04906at 310.717 kb on - strand, within BACOVA_04906at 310.717 kb on - strand, within BACOVA_04906at 310.813 kb on + strand, within BACOVA_04906at 310.814 kb on - strand, within BACOVA_04906at 310.857 kb on + strand, within BACOVA_04906at 310.883 kb on + strand, within BACOVA_04906at 310.899 kb on + strand, within BACOVA_04906at 310.967 kb on + strand, within BACOVA_04906at 310.967 kb on + strand, within BACOVA_04906at 310.967 kb on + strand, within BACOVA_04906at 311.043 kb on + strand, within BACOVA_04906at 311.043 kb on + strand, within BACOVA_04906at 311.196 kb on + strandat 311.247 kb on + strandat 311.247 kb on + strandat 311.251 kb on + strandat 311.252 kb on - strandat 311.274 kb on + strandat 311.274 kb on + strandat 311.282 kb on + strandat 311.287 kb on + strandat 311.330 kb on - strandat 311.331 kb on + strandat 311.331 kb on + strandat 311.332 kb on - strandat 311.379 kb on + strandat 311.397 kb on + strandat 311.408 kb on + strandat 311.415 kb on + strandat 311.518 kb on + strand, within BACOVA_04907at 311.557 kb on + strand, within BACOVA_04907at 311.557 kb on + strand, within BACOVA_04907at 311.593 kb on + strand, within BACOVA_04907at 311.595 kb on + strand, within BACOVA_04907at 311.596 kb on - strand, within BACOVA_04907at 311.644 kb on - strand, within BACOVA_04907at 311.648 kb on + strand, within BACOVA_04907at 311.669 kb on + strand, within BACOVA_04907at 311.683 kb on - strand, within BACOVA_04907at 311.683 kb on - strand, within BACOVA_04907at 311.829 kb on - strand, within BACOVA_04907at 311.836 kb on + strand, within BACOVA_04907at 311.836 kb on + strand, within BACOVA_04907at 311.837 kb on - strand, within BACOVA_04907at 311.837 kb on - strand, within BACOVA_04907at 311.915 kb on + strand, within BACOVA_04907at 311.917 kb on + strand, within BACOVA_04907at 311.917 kb on + strand, within BACOVA_04907at 311.939 kb on - strand, within BACOVA_04907at 311.972 kb on + strand, within BACOVA_04907at 311.989 kb on + strand, within BACOVA_04907at 312.013 kb on - strand, within BACOVA_04907at 312.080 kb on - strand, within BACOVA_04907at 312.092 kb on - strand, within BACOVA_04907at 312.196 kb on + strand, within BACOVA_04907at 312.215 kb on + strand, within BACOVA_04907at 312.305 kb on - strand, within BACOVA_04907at 312.310 kb on - strand, within BACOVA_04907at 312.464 kb on + strand, within BACOVA_04907at 312.464 kb on + strand, within BACOVA_04907at 312.508 kb on + strand, within BACOVA_04907at 312.581 kb on + strand, within BACOVA_04907at 312.630 kb on - strand, within BACOVA_04907at 312.688 kb on + strand, within BACOVA_04907at 312.689 kb on - strand, within BACOVA_04907at 312.689 kb on - strand, within BACOVA_04907at 312.691 kb on - strand, within BACOVA_04907at 312.718 kb on + strand, within BACOVA_04907at 312.720 kb on + strand, within BACOVA_04907at 312.753 kb on + strand, within BACOVA_04907at 312.799 kb on + strandat 312.872 kb on + strandat 312.872 kb on + strandat 312.897 kb on - strandat 312.944 kb on + strandat 312.961 kb on + strandat 312.962 kb on - strandat 312.962 kb on - strandat 312.966 kb on + strandat 312.966 kb on + strandat 312.968 kb on + strandat 312.968 kb on + strandat 313.001 kb on + strandat 313.030 kb on + strandat 313.044 kb on - strandat 313.057 kb on + strandat 313.059 kb on + strandat 313.059 kb on + strandat 313.060 kb on - strandat 313.064 kb on - strandat 313.119 kb on + strandat 313.119 kb on + strandat 313.120 kb on - strandat 313.132 kb on + strandat 313.132 kb on + strandat 313.205 kb on - strand, within BACOVA_04908at 313.205 kb on - strand, within BACOVA_04908at 313.230 kb on + strand, within BACOVA_04908at 313.260 kb on - strand, within BACOVA_04908at 313.260 kb on - strand, within BACOVA_04908at 313.260 kb on - strand, within BACOVA_04908at 313.272 kb on + strand, within BACOVA_04908at 313.272 kb on + strand, within BACOVA_04908at 313.276 kb on + strand, within BACOVA_04908at 313.277 kb on - strand, within BACOVA_04908at 313.277 kb on - strand, within BACOVA_04908at 313.278 kb on + strand, within BACOVA_04908at 313.279 kb on - strand, within BACOVA_04908at 313.282 kb on + strand, within BACOVA_04908at 313.301 kb on + strand, within BACOVA_04908at 313.360 kb on + strand, within BACOVA_04908at 313.384 kb on + strand, within BACOVA_04908at 313.385 kb on - strand, within BACOVA_04908at 313.386 kb on + strand, within BACOVA_04908at 313.395 kb on + strand, within BACOVA_04908at 313.395 kb on + strand, within BACOVA_04908at 313.395 kb on + strand, within BACOVA_04908at 313.397 kb on + strand, within BACOVA_04908at 313.397 kb on + strand, within BACOVA_04908at 313.398 kb on - strand, within BACOVA_04908at 313.398 kb on - strand, within BACOVA_04908at 313.407 kb on - strand, within BACOVA_04908at 313.437 kb on - strand, within BACOVA_04908at 313.437 kb on - strand, within BACOVA_04908at 313.438 kb on + strand, within BACOVA_04908at 313.534 kb on + strand, within BACOVA_04908at 313.552 kb on - strand, within BACOVA_04908at 313.557 kb on + strand, within BACOVA_04908at 313.590 kb on - strand, within BACOVA_04908at 313.592 kb on - strand, within BACOVA_04908at 313.616 kb on - strand, within BACOVA_04908at 313.620 kb on + strand, within BACOVA_04908at 313.620 kb on + strand, within BACOVA_04908at 313.621 kb on - strand, within BACOVA_04908at 313.628 kb on - strand, within BACOVA_04908at 313.628 kb on - strand, within BACOVA_04908at 313.643 kb on + strand, within BACOVA_04908at 313.644 kb on - strand, within BACOVA_04908at 313.664 kb on - strand, within BACOVA_04908at 313.665 kb on + strand, within BACOVA_04908at 313.666 kb on - strand, within BACOVA_04908at 313.666 kb on - strand, within BACOVA_04908at 313.666 kb on - strand, within BACOVA_04908at 313.673 kb on - strand, within BACOVA_04908at 313.695 kb on + strand, within BACOVA_04908at 313.695 kb on + strand, within BACOVA_04908at 313.701 kb on + strand, within BACOVA_04908at 313.721 kb on - strand, within BACOVA_04908at 313.721 kb on - strand, within BACOVA_04908at 313.748 kb on - strand, within BACOVA_04908at 313.755 kb on + strand, within BACOVA_04908at 313.756 kb on - strand, within BACOVA_04908at 313.774 kb on + strand, within BACOVA_04908at 313.774 kb on + strand, within BACOVA_04908at 313.802 kb on + strand, within BACOVA_04908at 313.833 kb on - strand, within BACOVA_04908at 313.866 kb on + strand, within BACOVA_04908at 313.867 kb on - strand, within BACOVA_04908at 313.922 kb on + strand, within BACOVA_04908

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Per-strain Table

Position Strand Gene LocusTag Fraction b-Mannan borohydrate reduced carob seed 2.5 mg/ml (C)
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310,365 + BACOVA_04906 0.43 +0.0
310,397 + BACOVA_04906 0.45 +1.1
310,398 - BACOVA_04906 0.45 -0.1
310,398 - BACOVA_04906 0.45 +1.0
310,439 + BACOVA_04906 0.48 +0.4
310,517 - BACOVA_04906 0.52 -1.2
310,517 - BACOVA_04906 0.52 -0.4
310,521 + BACOVA_04906 0.53 +2.4
310,521 + BACOVA_04906 0.53 +0.2
310,521 + BACOVA_04906 0.53 -0.3
310,522 - BACOVA_04906 0.53 +0.1
310,522 - BACOVA_04906 0.53 +0.9
310,522 - BACOVA_04906 0.53 -0.4
310,524 + BACOVA_04906 0.53 -0.9
310,524 + BACOVA_04906 0.53 +0.9
310,525 - BACOVA_04906 0.53 +0.1
310,576 - BACOVA_04906 0.56 -0.5
310,592 + BACOVA_04906 0.57 -0.9
310,658 - BACOVA_04906 0.61 +1.1
310,687 + BACOVA_04906 0.63 -0.6
310,687 + BACOVA_04906 0.63 -0.4
310,688 - BACOVA_04906 0.63 -2.5
310,699 + BACOVA_04906 0.63 +0.6
310,699 + BACOVA_04906 0.63 +1.4
310,699 + BACOVA_04906 0.63 +0.4
310,700 - BACOVA_04906 0.63 +0.4
310,717 - BACOVA_04906 0.64 -1.8
310,717 - BACOVA_04906 0.64 +0.6
310,813 + BACOVA_04906 0.70 +0.0
310,814 - BACOVA_04906 0.70 +1.6
310,857 + BACOVA_04906 0.73 +0.8
310,883 + BACOVA_04906 0.74 -0.3
310,899 + BACOVA_04906 0.75 -1.4
310,967 + BACOVA_04906 0.79 -0.5
310,967 + BACOVA_04906 0.79 -0.5
310,967 + BACOVA_04906 0.79 +0.3
311,043 + BACOVA_04906 0.84 +0.0
311,043 + BACOVA_04906 0.84 -0.2
311,196 + +0.1
311,247 + +0.6
311,247 + +0.0
311,251 + +0.1
311,252 - -0.5
311,274 + -0.3
311,274 + -0.3
311,282 + +0.5
311,287 + +0.4
311,330 - +0.7
311,331 + -0.9
311,331 + +0.2
311,332 - +1.4
311,379 + -1.0
311,397 + +1.1
311,408 + -2.1
311,415 + -1.9
311,518 + BACOVA_04907 0.11 -0.2
311,557 + BACOVA_04907 0.14 -1.4
311,557 + BACOVA_04907 0.14 -0.2
311,593 + BACOVA_04907 0.16 +0.3
311,595 + BACOVA_04907 0.16 +0.5
311,596 - BACOVA_04907 0.16 -0.9
311,644 - BACOVA_04907 0.19 +0.0
311,648 + BACOVA_04907 0.20 +0.1
311,669 + BACOVA_04907 0.21 -1.1
311,683 - BACOVA_04907 0.22 +0.6
311,683 - BACOVA_04907 0.22 +1.0
311,829 - BACOVA_04907 0.31 +0.7
311,836 + BACOVA_04907 0.31 -0.2
311,836 + BACOVA_04907 0.31 -1.6
311,837 - BACOVA_04907 0.31 +0.9
311,837 - BACOVA_04907 0.31 -1.2
311,915 + BACOVA_04907 0.36 -1.3
311,917 + BACOVA_04907 0.36 -0.6
311,917 + BACOVA_04907 0.36 -2.5
311,939 - BACOVA_04907 0.38 +0.5
311,972 + BACOVA_04907 0.40 +0.3
311,989 + BACOVA_04907 0.41 -0.6
312,013 - BACOVA_04907 0.43 -0.1
312,080 - BACOVA_04907 0.47 +3.0
312,092 - BACOVA_04907 0.48 -0.5
312,196 + BACOVA_04907 0.54 -0.3
312,215 + BACOVA_04907 0.55 +0.3
312,305 - BACOVA_04907 0.61 -0.8
312,310 - BACOVA_04907 0.61 +0.1
312,464 + BACOVA_04907 0.71 -0.8
312,464 + BACOVA_04907 0.71 +0.6
312,508 + BACOVA_04907 0.74 -1.6
312,581 + BACOVA_04907 0.78 +1.0
312,630 - BACOVA_04907 0.82 -0.2
312,688 + BACOVA_04907 0.85 +0.4
312,689 - BACOVA_04907 0.85 -1.3
312,689 - BACOVA_04907 0.85 -0.9
312,691 - BACOVA_04907 0.85 -1.3
312,718 + BACOVA_04907 0.87 -0.9
312,720 + BACOVA_04907 0.87 +0.8
312,753 + BACOVA_04907 0.89 +0.6
312,799 + -0.3
312,872 + +0.8
312,872 + +0.2
312,897 - -0.6
312,944 + +1.4
312,961 + +1.1
312,962 - -0.6
312,962 - +0.1
312,966 + -2.6
312,966 + +1.4
312,968 + +1.1
312,968 + -1.8
313,001 + -1.1
313,030 + -2.8
313,044 - +1.0
313,057 + -0.9
313,059 + -0.7
313,059 + -0.5
313,060 - +0.4
313,064 - -1.7
313,119 + -2.1
313,119 + -0.8
313,120 - -0.2
313,132 + -0.6
313,132 + +0.4
313,205 - BACOVA_04908 0.12 -1.4
313,205 - BACOVA_04908 0.12 -3.2
313,230 + BACOVA_04908 0.13 +0.2
313,260 - BACOVA_04908 0.15 -0.7
313,260 - BACOVA_04908 0.15 -0.5
313,260 - BACOVA_04908 0.15 +0.4
313,272 + BACOVA_04908 0.16 +0.1
313,272 + BACOVA_04908 0.16 +0.3
313,276 + BACOVA_04908 0.16 +1.6
313,277 - BACOVA_04908 0.16 -1.1
313,277 - BACOVA_04908 0.16 -0.2
313,278 + BACOVA_04908 0.16 +0.5
313,279 - BACOVA_04908 0.16 -1.4
313,282 + BACOVA_04908 0.16 +0.2
313,301 + BACOVA_04908 0.17 -0.8
313,360 + BACOVA_04908 0.21 +0.3
313,384 + BACOVA_04908 0.23 -0.8
313,385 - BACOVA_04908 0.23 +0.2
313,386 + BACOVA_04908 0.23 +0.9
313,395 + BACOVA_04908 0.23 +0.6
313,395 + BACOVA_04908 0.23 -0.9
313,395 + BACOVA_04908 0.23 -2.0
313,397 + BACOVA_04908 0.23 -0.3
313,397 + BACOVA_04908 0.23 -0.5
313,398 - BACOVA_04908 0.23 +0.7
313,398 - BACOVA_04908 0.23 -0.1
313,407 - BACOVA_04908 0.24 -0.1
313,437 - BACOVA_04908 0.26 -1.2
313,437 - BACOVA_04908 0.26 -1.2
313,438 + BACOVA_04908 0.26 -0.9
313,534 + BACOVA_04908 0.32 +0.4
313,552 - BACOVA_04908 0.33 -1.7
313,557 + BACOVA_04908 0.33 -1.8
313,590 - BACOVA_04908 0.35 -0.9
313,592 - BACOVA_04908 0.35 +2.1
313,616 - BACOVA_04908 0.37 +0.7
313,620 + BACOVA_04908 0.37 +0.1
313,620 + BACOVA_04908 0.37 -1.0
313,621 - BACOVA_04908 0.37 -1.2
313,628 - BACOVA_04908 0.38 +0.4
313,628 - BACOVA_04908 0.38 -1.0
313,643 + BACOVA_04908 0.38 +0.1
313,644 - BACOVA_04908 0.39 -0.7
313,664 - BACOVA_04908 0.40 -1.1
313,665 + BACOVA_04908 0.40 +0.5
313,666 - BACOVA_04908 0.40 +1.7
313,666 - BACOVA_04908 0.40 -1.6
313,666 - BACOVA_04908 0.40 +0.5
313,673 - BACOVA_04908 0.40 -1.4
313,695 + BACOVA_04908 0.42 +0.7
313,695 + BACOVA_04908 0.42 +0.7
313,701 + BACOVA_04908 0.42 -0.2
313,721 - BACOVA_04908 0.43 +0.4
313,721 - BACOVA_04908 0.43 -1.8
313,748 - BACOVA_04908 0.45 +1.4
313,755 + BACOVA_04908 0.45 -2.8
313,756 - BACOVA_04908 0.45 +1.8
313,774 + BACOVA_04908 0.47 -1.4
313,774 + BACOVA_04908 0.47 -2.1
313,802 + BACOVA_04908 0.48 -0.2
313,833 - BACOVA_04908 0.50 -0.3
313,866 + BACOVA_04908 0.52 +0.7
313,867 - BACOVA_04908 0.52 -1.2
313,922 + BACOVA_04908 0.56 -1.4

Or see this region's nucleotide sequence