Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04332

Experiment: b-Mannan borohydrate reduced carob seed 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_04331 and BACOVA_04332 are separated by 134 nucleotidesBACOVA_04332 and BACOVA_04333 are separated by 51 nucleotidesBACOVA_04333 and BACOVA_04334 overlap by 4 nucleotides BACOVA_04331: BACOVA_04331 - hypothetical protein, at 215,879 to 217,540 _04331 BACOVA_04332: BACOVA_04332 - tRNA-Cys, at 217,675 to 217,746 _04332 BACOVA_04333: BACOVA_04333 - hypothetical protein, at 217,798 to 218,013 _04333 BACOVA_04334: BACOVA_04334 - ferrous iron transport protein B, at 218,010 to 220,496 _04334 Position (kb) 217 218Strain fitness (log2 ratio) -1 0 1at 217.670 kb on - strandat 217.889 kb on - strand, within BACOVA_04333at 217.950 kb on - strand, within BACOVA_04333at 218.008 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction b-Mannan borohydrate reduced carob seed 2.5 mg/ml (C)
remove
217,670 - -0.6
217,889 - BACOVA_04333 0.42 -0.2
217,950 - BACOVA_04333 0.70 -1.1
218,008 - -0.2

Or see this region's nucleotide sequence