Experiment: b-Mannan borohydrate reduced carob seed 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03211 and BACOVA_03212 are separated by 81 nucleotides BACOVA_03212 and BACOVA_03213 are separated by 13 nucleotides BACOVA_03213 and BACOVA_03214 are separated by 29 nucleotides BACOVA_03214 and BACOVA_03216 are separated by 5 nucleotides BACOVA_03216 and BACOVA_03215 overlap by 357 nucleotides BACOVA_03215 and BACOVA_03217 are separated by 477 nucleotides
BACOVA_03211: BACOVA_03211 - hypothetical protein, at 300,650 to 301,702
_03211
BACOVA_03212: BACOVA_03212 - hypothetical protein, at 301,784 to 302,293
_03212
BACOVA_03213: BACOVA_03213 - hypothetical protein, at 302,307 to 302,672
_03213
BACOVA_03214: BACOVA_03214 - hypothetical protein, at 302,702 to 304,012
_03214
BACOVA_03216: BACOVA_03216 - hypothetical protein, at 304,018 to 304,527
_03216
BACOVA_03215: BACOVA_03215 - hypothetical protein, at 304,171 to 304,350
_03215
BACOVA_03217: BACOVA_03217 - putative DNA-binding protein, at 304,828 to 305,436
_03217
Position (kb) 302
303
304
305 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 301.721 kb on + strand at 301.743 kb on + strand at 301.743 kb on + strand at 301.743 kb on + strand at 301.744 kb on - strand at 301.774 kb on - strand at 301.789 kb on + strand at 301.819 kb on - strand at 301.861 kb on + strand, within BACOVA_03212 at 301.862 kb on - strand, within BACOVA_03212 at 301.862 kb on - strand, within BACOVA_03212 at 301.873 kb on + strand, within BACOVA_03212 at 301.897 kb on + strand, within BACOVA_03212 at 301.898 kb on - strand, within BACOVA_03212 at 301.898 kb on - strand, within BACOVA_03212 at 301.903 kb on + strand, within BACOVA_03212 at 301.927 kb on + strand, within BACOVA_03212 at 302.028 kb on + strand, within BACOVA_03212 at 302.028 kb on + strand, within BACOVA_03212 at 302.037 kb on + strand, within BACOVA_03212 at 302.065 kb on + strand, within BACOVA_03212 at 302.079 kb on + strand, within BACOVA_03212 at 302.083 kb on + strand, within BACOVA_03212 at 302.084 kb on - strand, within BACOVA_03212 at 302.084 kb on - strand, within BACOVA_03212 at 302.084 kb on - strand, within BACOVA_03212 at 302.084 kb on - strand, within BACOVA_03212 at 302.153 kb on + strand, within BACOVA_03212 at 302.162 kb on - strand, within BACOVA_03212 at 302.162 kb on - strand, within BACOVA_03212 at 302.178 kb on + strand, within BACOVA_03212 at 302.181 kb on + strand, within BACOVA_03212 at 302.182 kb on - strand, within BACOVA_03212 at 302.182 kb on - strand, within BACOVA_03212 at 302.185 kb on + strand, within BACOVA_03212 at 302.185 kb on + strand, within BACOVA_03212 at 302.186 kb on - strand, within BACOVA_03212 at 302.275 kb on - strand at 302.281 kb on - strand at 302.281 kb on - strand at 302.346 kb on + strand, within BACOVA_03213 at 302.347 kb on - strand, within BACOVA_03213 at 302.347 kb on - strand, within BACOVA_03213 at 302.351 kb on + strand, within BACOVA_03213 at 302.351 kb on + strand, within BACOVA_03213 at 302.352 kb on - strand, within BACOVA_03213 at 302.357 kb on - strand, within BACOVA_03213 at 302.368 kb on - strand, within BACOVA_03213 at 302.368 kb on - strand, within BACOVA_03213 at 302.395 kb on - strand, within BACOVA_03213 at 302.411 kb on - strand, within BACOVA_03213 at 302.462 kb on + strand, within BACOVA_03213 at 302.464 kb on + strand, within BACOVA_03213 at 302.464 kb on + strand, within BACOVA_03213 at 302.563 kb on + strand, within BACOVA_03213 at 302.564 kb on - strand, within BACOVA_03213 at 302.585 kb on + strand, within BACOVA_03213 at 302.587 kb on + strand, within BACOVA_03213 at 302.588 kb on - strand, within BACOVA_03213 at 302.647 kb on + strand at 302.647 kb on + strand at 302.647 kb on + strand at 302.647 kb on + strand at 302.648 kb on - strand at 302.648 kb on - strand at 302.654 kb on + strand at 302.692 kb on - strand at 302.692 kb on - strand at 302.695 kb on + strand at 302.696 kb on - strand at 302.698 kb on + strand at 302.731 kb on + strand at 302.732 kb on - strand at 302.750 kb on + strand at 302.757 kb on + strand at 302.787 kb on + strand at 302.788 kb on - strand at 302.788 kb on - strand at 302.790 kb on + strand at 302.805 kb on - strand at 302.894 kb on - strand, within BACOVA_03214 at 302.894 kb on - strand, within BACOVA_03214 at 302.894 kb on - strand, within BACOVA_03214 at 302.904 kb on - strand, within BACOVA_03214 at 302.905 kb on + strand, within BACOVA_03214 at 302.905 kb on + strand, within BACOVA_03214 at 302.911 kb on - strand, within BACOVA_03214 at 302.921 kb on - strand, within BACOVA_03214 at 302.964 kb on + strand, within BACOVA_03214 at 302.972 kb on - strand, within BACOVA_03214 at 302.973 kb on + strand, within BACOVA_03214 at 303.004 kb on + strand, within BACOVA_03214 at 303.049 kb on + strand, within BACOVA_03214 at 303.049 kb on + strand, within BACOVA_03214 at 303.050 kb on - strand, within BACOVA_03214 at 303.067 kb on - strand, within BACOVA_03214 at 303.089 kb on + strand, within BACOVA_03214 at 303.120 kb on - strand, within BACOVA_03214 at 303.175 kb on - strand, within BACOVA_03214 at 303.190 kb on + strand, within BACOVA_03214 at 303.210 kb on - strand, within BACOVA_03214 at 303.255 kb on - strand, within BACOVA_03214 at 303.281 kb on + strand, within BACOVA_03214 at 303.291 kb on - strand, within BACOVA_03214 at 303.314 kb on - strand, within BACOVA_03214 at 303.314 kb on - strand, within BACOVA_03214 at 303.324 kb on - strand, within BACOVA_03214 at 303.324 kb on - strand, within BACOVA_03214 at 303.324 kb on - strand, within BACOVA_03214 at 303.326 kb on + strand, within BACOVA_03214 at 303.362 kb on - strand, within BACOVA_03214 at 303.411 kb on - strand, within BACOVA_03214 at 303.435 kb on - strand, within BACOVA_03214 at 303.437 kb on + strand, within BACOVA_03214 at 303.437 kb on + strand, within BACOVA_03214 at 303.438 kb on - strand, within BACOVA_03214 at 303.438 kb on - strand, within BACOVA_03214 at 303.439 kb on + strand, within BACOVA_03214 at 303.439 kb on + strand, within BACOVA_03214 at 303.470 kb on + strand, within BACOVA_03214 at 303.473 kb on - strand, within BACOVA_03214 at 303.473 kb on - strand, within BACOVA_03214 at 303.498 kb on - strand, within BACOVA_03214 at 303.547 kb on - strand, within BACOVA_03214 at 303.615 kb on + strand, within BACOVA_03214 at 303.615 kb on + strand, within BACOVA_03214 at 303.615 kb on + strand, within BACOVA_03214 at 303.672 kb on - strand, within BACOVA_03214 at 303.681 kb on + strand, within BACOVA_03214 at 303.684 kb on - strand, within BACOVA_03214 at 303.684 kb on - strand, within BACOVA_03214 at 303.684 kb on - strand, within BACOVA_03214 at 303.723 kb on - strand, within BACOVA_03214 at 303.739 kb on + strand, within BACOVA_03214 at 303.739 kb on + strand, within BACOVA_03214 at 303.740 kb on - strand, within BACOVA_03214 at 303.740 kb on - strand, within BACOVA_03214 at 303.740 kb on - strand, within BACOVA_03214 at 303.741 kb on + strand, within BACOVA_03214 at 303.741 kb on + strand, within BACOVA_03214 at 303.742 kb on - strand, within BACOVA_03214 at 303.756 kb on + strand, within BACOVA_03214 at 303.760 kb on - strand, within BACOVA_03214 at 303.795 kb on - strand, within BACOVA_03214 at 303.850 kb on + strand, within BACOVA_03214 at 303.850 kb on + strand, within BACOVA_03214 at 303.851 kb on - strand, within BACOVA_03214 at 303.853 kb on + strand, within BACOVA_03214 at 303.861 kb on - strand, within BACOVA_03214 at 303.944 kb on - strand at 303.972 kb on - strand at 303.987 kb on - strand at 304.039 kb on + strand at 304.049 kb on - strand at 304.053 kb on + strand at 304.053 kb on + strand at 304.054 kb on - strand at 304.054 kb on - strand at 304.055 kb on + strand at 304.056 kb on - strand at 304.056 kb on - strand at 304.057 kb on + strand at 304.057 kb on + strand at 304.057 kb on + strand at 304.058 kb on - strand at 304.064 kb on - strand at 304.083 kb on + strand, within BACOVA_03216 at 304.092 kb on + strand, within BACOVA_03216 at 304.125 kb on + strand, within BACOVA_03216 at 304.134 kb on + strand, within BACOVA_03216 at 304.218 kb on + strand at 304.249 kb on - strand at 304.348 kb on + strand at 304.348 kb on + strand at 304.358 kb on + strand at 304.358 kb on + strand at 304.359 kb on - strand at 304.363 kb on + strand at 304.393 kb on - strand at 304.436 kb on - strand at 304.436 kb on - strand at 304.462 kb on + strand at 304.477 kb on - strand at 304.496 kb on - strand at 304.499 kb on + strand at 304.509 kb on + strand at 304.510 kb on - strand at 304.510 kb on - strand at 304.516 kb on + strand at 304.535 kb on + strand at 304.545 kb on + strand at 304.545 kb on + strand at 304.580 kb on + strand at 304.580 kb on + strand at 304.580 kb on + strand at 304.588 kb on - strand at 304.602 kb on + strand at 304.602 kb on + strand at 304.602 kb on + strand at 304.603 kb on - strand at 304.645 kb on - strand at 304.653 kb on - strand at 304.678 kb on + strand at 304.678 kb on + strand at 304.682 kb on - strand at 304.691 kb on - strand at 304.714 kb on - strand at 304.733 kb on + strand at 304.787 kb on + strand at 304.787 kb on + strand at 304.798 kb on - strand at 304.892 kb on - strand, within BACOVA_03217 at 304.892 kb on - strand, within BACOVA_03217 at 304.942 kb on + strand, within BACOVA_03217 at 304.959 kb on + strand, within BACOVA_03217 at 304.960 kb on - strand, within BACOVA_03217 at 304.960 kb on - strand, within BACOVA_03217 at 304.961 kb on + strand, within BACOVA_03217 at 304.962 kb on - strand, within BACOVA_03217
Per-strain Table
Position Strand Gene LocusTag Fraction b-Mannan borohydrate reduced carob seed 2.5 mg/ml (C) remove 301,721 + +0.1 301,743 + -0.6 301,743 + -1.6 301,743 + +0.3 301,744 - +1.4 301,774 - +1.0 301,789 + +0.3 301,819 - -2.6 301,861 + BACOVA_03212 0.15 +0.7 301,862 - BACOVA_03212 0.15 -1.0 301,862 - BACOVA_03212 0.15 -1.4 301,873 + BACOVA_03212 0.17 -0.6 301,897 + BACOVA_03212 0.22 +2.3 301,898 - BACOVA_03212 0.22 -2.0 301,898 - BACOVA_03212 0.22 -0.9 301,903 + BACOVA_03212 0.23 -0.7 301,927 + BACOVA_03212 0.28 -1.0 302,028 + BACOVA_03212 0.48 -0.3 302,028 + BACOVA_03212 0.48 +1.9 302,037 + BACOVA_03212 0.50 +0.0 302,065 + BACOVA_03212 0.55 -0.6 302,079 + BACOVA_03212 0.58 -0.9 302,083 + BACOVA_03212 0.59 +0.2 302,084 - BACOVA_03212 0.59 +0.5 302,084 - BACOVA_03212 0.59 -0.9 302,084 - BACOVA_03212 0.59 +0.8 302,084 - BACOVA_03212 0.59 +0.0 302,153 + BACOVA_03212 0.72 -0.1 302,162 - BACOVA_03212 0.74 +0.4 302,162 - BACOVA_03212 0.74 -0.0 302,178 + BACOVA_03212 0.77 +1.8 302,181 + BACOVA_03212 0.78 -0.8 302,182 - BACOVA_03212 0.78 -2.7 302,182 - BACOVA_03212 0.78 -1.1 302,185 + BACOVA_03212 0.79 -2.1 302,185 + BACOVA_03212 0.79 +0.2 302,186 - BACOVA_03212 0.79 +0.4 302,275 - +1.4 302,281 - -2.7 302,281 - -0.7 302,346 + BACOVA_03213 0.11 -0.4 302,347 - BACOVA_03213 0.11 +0.1 302,347 - BACOVA_03213 0.11 -0.6 302,351 + BACOVA_03213 0.12 -0.2 302,351 + BACOVA_03213 0.12 +0.1 302,352 - BACOVA_03213 0.12 +0.4 302,357 - BACOVA_03213 0.14 -2.1 302,368 - BACOVA_03213 0.17 -1.1 302,368 - BACOVA_03213 0.17 -2.0 302,395 - BACOVA_03213 0.24 -0.0 302,411 - BACOVA_03213 0.28 -0.9 302,462 + BACOVA_03213 0.42 -1.1 302,464 + BACOVA_03213 0.43 -0.1 302,464 + BACOVA_03213 0.43 +1.2 302,563 + BACOVA_03213 0.70 -1.7 302,564 - BACOVA_03213 0.70 +0.1 302,585 + BACOVA_03213 0.76 -1.6 302,587 + BACOVA_03213 0.77 +1.3 302,588 - BACOVA_03213 0.77 -1.1 302,647 + +0.4 302,647 + +1.6 302,647 + +0.9 302,647 + +0.9 302,648 - -0.5 302,648 - -0.6 302,654 + +0.1 302,692 - +1.6 302,692 - +0.6 302,695 + -0.5 302,696 - -0.1 302,698 + -0.1 302,731 + -0.8 302,732 - -0.3 302,750 + +0.6 302,757 + +0.3 302,787 + +0.4 302,788 - -0.4 302,788 - +3.0 302,790 + -1.1 302,805 - -0.6 302,894 - BACOVA_03214 0.15 +1.9 302,894 - BACOVA_03214 0.15 +0.9 302,894 - BACOVA_03214 0.15 -0.5 302,904 - BACOVA_03214 0.15 -0.2 302,905 + BACOVA_03214 0.15 -0.4 302,905 + BACOVA_03214 0.15 -1.3 302,911 - BACOVA_03214 0.16 -1.4 302,921 - BACOVA_03214 0.17 +1.2 302,964 + BACOVA_03214 0.20 +0.7 302,972 - BACOVA_03214 0.21 -0.1 302,973 + BACOVA_03214 0.21 -0.1 303,004 + BACOVA_03214 0.23 -1.4 303,049 + BACOVA_03214 0.26 -1.1 303,049 + BACOVA_03214 0.26 -2.5 303,050 - BACOVA_03214 0.27 +1.6 303,067 - BACOVA_03214 0.28 +0.1 303,089 + BACOVA_03214 0.30 +0.1 303,120 - BACOVA_03214 0.32 +0.4 303,175 - BACOVA_03214 0.36 +0.7 303,190 + BACOVA_03214 0.37 -0.4 303,210 - BACOVA_03214 0.39 -1.8 303,255 - BACOVA_03214 0.42 +1.4 303,281 + BACOVA_03214 0.44 +1.7 303,291 - BACOVA_03214 0.45 +1.4 303,314 - BACOVA_03214 0.47 -0.7 303,314 - BACOVA_03214 0.47 +0.3 303,324 - BACOVA_03214 0.47 -0.6 303,324 - BACOVA_03214 0.47 +2.0 303,324 - BACOVA_03214 0.47 +0.8 303,326 + BACOVA_03214 0.48 -1.2 303,362 - BACOVA_03214 0.50 +0.3 303,411 - BACOVA_03214 0.54 -0.6 303,435 - BACOVA_03214 0.56 +0.1 303,437 + BACOVA_03214 0.56 +1.2 303,437 + BACOVA_03214 0.56 +1.1 303,438 - BACOVA_03214 0.56 -0.0 303,438 - BACOVA_03214 0.56 -0.6 303,439 + BACOVA_03214 0.56 +0.2 303,439 + BACOVA_03214 0.56 -2.1 303,470 + BACOVA_03214 0.59 +0.9 303,473 - BACOVA_03214 0.59 +1.1 303,473 - BACOVA_03214 0.59 -1.7 303,498 - BACOVA_03214 0.61 -1.1 303,547 - BACOVA_03214 0.64 -0.1 303,615 + BACOVA_03214 0.70 +1.7 303,615 + BACOVA_03214 0.70 +0.4 303,615 + BACOVA_03214 0.70 +0.4 303,672 - BACOVA_03214 0.74 -0.5 303,681 + BACOVA_03214 0.75 +2.0 303,684 - BACOVA_03214 0.75 -1.4 303,684 - BACOVA_03214 0.75 -0.9 303,684 - BACOVA_03214 0.75 -0.4 303,723 - BACOVA_03214 0.78 +2.0 303,739 + BACOVA_03214 0.79 +2.3 303,739 + BACOVA_03214 0.79 -0.1 303,740 - BACOVA_03214 0.79 -1.9 303,740 - BACOVA_03214 0.79 -0.1 303,740 - BACOVA_03214 0.79 -1.0 303,741 + BACOVA_03214 0.79 -0.2 303,741 + BACOVA_03214 0.79 +0.9 303,742 - BACOVA_03214 0.79 +0.8 303,756 + BACOVA_03214 0.80 -0.4 303,760 - BACOVA_03214 0.81 +0.7 303,795 - BACOVA_03214 0.83 +2.8 303,850 + BACOVA_03214 0.88 +0.4 303,850 + BACOVA_03214 0.88 -0.3 303,851 - BACOVA_03214 0.88 -0.4 303,853 + BACOVA_03214 0.88 +0.4 303,861 - BACOVA_03214 0.88 -1.1 303,944 - -0.0 303,972 - -0.2 303,987 - -2.3 304,039 + +1.4 304,049 - -0.9 304,053 + -0.6 304,053 + -0.6 304,054 - +0.9 304,054 - -0.3 304,055 + -0.5 304,056 - -0.6 304,056 - -0.8 304,057 + -0.5 304,057 + -0.6 304,057 + +0.4 304,058 - -0.5 304,064 - +0.6 304,083 + BACOVA_03216 0.13 +1.4 304,092 + BACOVA_03216 0.15 -2.4 304,125 + BACOVA_03216 0.21 -1.0 304,134 + BACOVA_03216 0.23 -0.3 304,218 + -0.2 304,249 - -1.6 304,348 + +1.4 304,348 + -0.6 304,358 + -0.4 304,358 + -0.5 304,359 - -2.4 304,363 + +0.9 304,393 - +0.4 304,436 - +0.3 304,436 - +1.1 304,462 + -2.8 304,477 - -2.4 304,496 - +0.4 304,499 + -0.5 304,509 + +0.4 304,510 - +0.4 304,510 - +0.0 304,516 + +0.4 304,535 + -0.7 304,545 + +1.0 304,545 + -1.3 304,580 + +0.9 304,580 + -0.4 304,580 + -1.4 304,588 - +0.9 304,602 + -0.6 304,602 + +1.3 304,602 + -0.1 304,603 - +2.1 304,645 - -0.1 304,653 - -1.6 304,678 + +0.0 304,678 + -0.9 304,682 - -0.6 304,691 - -0.8 304,714 - +0.4 304,733 + +0.4 304,787 + +0.2 304,787 + -2.4 304,798 - -0.1 304,892 - BACOVA_03217 0.11 -1.7 304,892 - BACOVA_03217 0.11 -0.1 304,942 + BACOVA_03217 0.19 +1.1 304,959 + BACOVA_03217 0.22 -1.2 304,960 - BACOVA_03217 0.22 -0.5 304,960 - BACOVA_03217 0.22 -0.1 304,961 + BACOVA_03217 0.22 -0.4 304,962 - BACOVA_03217 0.22 +1.7
Or see this region's nucleotide sequence