Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03138

Experiment: b-Mannan borohydrate reduced carob seed 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03137 and BACOVA_03138 overlap by 20 nucleotidesBACOVA_03138 and BACOVA_03139 are separated by 16 nucleotidesBACOVA_03139 and BACOVA_03140 overlap by 4 nucleotides BACOVA_03137: BACOVA_03137 - membrane protein, at 229,012 to 229,974 _03137 BACOVA_03138: BACOVA_03138 - hypothetical protein, at 229,955 to 230,893 _03138 BACOVA_03139: BACOVA_03139 - hypothetical protein, at 230,910 to 231,527 _03139 BACOVA_03140: BACOVA_03140 - hypothetical protein, at 231,524 to 232,795 _03140 Position (kb) 229 230 231Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 229.023 kb on - strandat 229.030 kb on - strandat 229.117 kb on + strand, within BACOVA_03137at 229.118 kb on - strand, within BACOVA_03137at 229.118 kb on - strand, within BACOVA_03137at 229.118 kb on - strand, within BACOVA_03137at 229.120 kb on - strand, within BACOVA_03137at 229.173 kb on + strand, within BACOVA_03137at 229.179 kb on + strand, within BACOVA_03137at 229.191 kb on + strand, within BACOVA_03137at 229.208 kb on + strand, within BACOVA_03137at 229.209 kb on - strand, within BACOVA_03137at 229.311 kb on - strand, within BACOVA_03137at 229.358 kb on + strand, within BACOVA_03137at 229.398 kb on - strand, within BACOVA_03137at 229.408 kb on + strand, within BACOVA_03137at 229.412 kb on + strand, within BACOVA_03137at 229.412 kb on + strand, within BACOVA_03137at 229.413 kb on - strand, within BACOVA_03137at 229.416 kb on + strand, within BACOVA_03137at 229.416 kb on + strand, within BACOVA_03137at 229.417 kb on - strand, within BACOVA_03137at 229.417 kb on - strand, within BACOVA_03137at 229.417 kb on - strand, within BACOVA_03137at 229.431 kb on + strand, within BACOVA_03137at 229.431 kb on + strand, within BACOVA_03137at 229.432 kb on - strand, within BACOVA_03137at 229.433 kb on + strand, within BACOVA_03137at 229.517 kb on + strand, within BACOVA_03137at 229.518 kb on - strand, within BACOVA_03137at 229.518 kb on - strand, within BACOVA_03137at 229.567 kb on + strand, within BACOVA_03137at 229.567 kb on + strand, within BACOVA_03137at 229.568 kb on - strand, within BACOVA_03137at 229.568 kb on - strand, within BACOVA_03137at 229.568 kb on - strand, within BACOVA_03137at 229.569 kb on + strand, within BACOVA_03137at 229.569 kb on + strand, within BACOVA_03137at 229.570 kb on - strand, within BACOVA_03137at 229.570 kb on - strand, within BACOVA_03137at 229.570 kb on - strand, within BACOVA_03137at 229.575 kb on + strand, within BACOVA_03137at 229.635 kb on - strand, within BACOVA_03137at 229.654 kb on - strand, within BACOVA_03137at 229.719 kb on - strand, within BACOVA_03137at 229.821 kb on + strand, within BACOVA_03137at 229.821 kb on + strand, within BACOVA_03137at 229.822 kb on - strand, within BACOVA_03137at 229.825 kb on - strand, within BACOVA_03137at 229.836 kb on + strand, within BACOVA_03137at 229.837 kb on - strand, within BACOVA_03137at 229.837 kb on - strand, within BACOVA_03137at 229.839 kb on - strand, within BACOVA_03137at 229.914 kb on + strandat 229.915 kb on - strandat 229.915 kb on - strandat 229.915 kb on - strandat 229.920 kb on - strandat 229.925 kb on - strandat 229.925 kb on - strandat 229.934 kb on - strandat 229.986 kb on - strandat 230.079 kb on + strand, within BACOVA_03138at 230.086 kb on + strand, within BACOVA_03138at 230.086 kb on + strand, within BACOVA_03138at 230.086 kb on + strand, within BACOVA_03138at 230.086 kb on + strand, within BACOVA_03138at 230.088 kb on + strand, within BACOVA_03138at 230.089 kb on - strand, within BACOVA_03138at 230.094 kb on + strand, within BACOVA_03138at 230.108 kb on - strand, within BACOVA_03138at 230.114 kb on - strand, within BACOVA_03138at 230.143 kb on + strand, within BACOVA_03138at 230.170 kb on - strand, within BACOVA_03138at 230.185 kb on - strand, within BACOVA_03138at 230.226 kb on + strand, within BACOVA_03138at 230.227 kb on - strand, within BACOVA_03138at 230.227 kb on - strand, within BACOVA_03138at 230.238 kb on + strand, within BACOVA_03138at 230.238 kb on + strand, within BACOVA_03138at 230.239 kb on - strand, within BACOVA_03138at 230.291 kb on + strand, within BACOVA_03138at 230.292 kb on - strand, within BACOVA_03138at 230.337 kb on + strand, within BACOVA_03138at 230.337 kb on + strand, within BACOVA_03138at 230.431 kb on - strand, within BACOVA_03138at 230.489 kb on - strand, within BACOVA_03138at 230.493 kb on + strand, within BACOVA_03138at 230.494 kb on - strand, within BACOVA_03138at 230.503 kb on - strand, within BACOVA_03138at 230.505 kb on + strand, within BACOVA_03138at 230.506 kb on - strand, within BACOVA_03138at 230.506 kb on - strand, within BACOVA_03138at 230.519 kb on + strand, within BACOVA_03138at 230.524 kb on - strand, within BACOVA_03138at 230.607 kb on + strand, within BACOVA_03138at 230.635 kb on - strand, within BACOVA_03138at 230.668 kb on - strand, within BACOVA_03138at 230.668 kb on - strand, within BACOVA_03138at 230.672 kb on + strand, within BACOVA_03138at 230.672 kb on + strand, within BACOVA_03138at 230.672 kb on + strand, within BACOVA_03138at 230.692 kb on + strand, within BACOVA_03138at 230.693 kb on - strand, within BACOVA_03138at 230.695 kb on + strand, within BACOVA_03138at 230.695 kb on + strand, within BACOVA_03138at 230.747 kb on + strand, within BACOVA_03138at 230.747 kb on + strand, within BACOVA_03138at 230.748 kb on - strand, within BACOVA_03138at 230.748 kb on - strand, within BACOVA_03138at 230.780 kb on + strand, within BACOVA_03138at 230.781 kb on - strand, within BACOVA_03138at 230.793 kb on + strand, within BACOVA_03138at 230.797 kb on + strand, within BACOVA_03138at 230.798 kb on - strand, within BACOVA_03138at 230.817 kb on - strandat 230.844 kb on + strandat 230.845 kb on - strandat 230.854 kb on - strandat 230.854 kb on - strandat 230.859 kb on + strandat 230.870 kb on - strandat 230.933 kb on + strandat 230.938 kb on + strandat 230.949 kb on - strandat 230.985 kb on + strand, within BACOVA_03139at 230.986 kb on - strand, within BACOVA_03139at 230.991 kb on + strand, within BACOVA_03139at 230.991 kb on + strand, within BACOVA_03139at 230.992 kb on - strand, within BACOVA_03139at 231.023 kb on + strand, within BACOVA_03139at 231.066 kb on - strand, within BACOVA_03139at 231.066 kb on - strand, within BACOVA_03139at 231.070 kb on + strand, within BACOVA_03139at 231.108 kb on - strand, within BACOVA_03139at 231.116 kb on - strand, within BACOVA_03139at 231.119 kb on + strand, within BACOVA_03139at 231.119 kb on + strand, within BACOVA_03139at 231.119 kb on + strand, within BACOVA_03139at 231.119 kb on + strand, within BACOVA_03139at 231.120 kb on - strand, within BACOVA_03139at 231.120 kb on - strand, within BACOVA_03139at 231.120 kb on - strand, within BACOVA_03139at 231.120 kb on - strand, within BACOVA_03139at 231.120 kb on - strand, within BACOVA_03139at 231.120 kb on - strand, within BACOVA_03139at 231.212 kb on + strand, within BACOVA_03139at 231.212 kb on + strand, within BACOVA_03139at 231.213 kb on - strand, within BACOVA_03139at 231.213 kb on - strand, within BACOVA_03139at 231.299 kb on - strand, within BACOVA_03139at 231.365 kb on + strand, within BACOVA_03139at 231.382 kb on - strand, within BACOVA_03139at 231.382 kb on - strand, within BACOVA_03139at 231.384 kb on - strand, within BACOVA_03139at 231.384 kb on - strand, within BACOVA_03139at 231.384 kb on - strand, within BACOVA_03139at 231.440 kb on - strand, within BACOVA_03139at 231.553 kb on + strandat 231.554 kb on - strandat 231.554 kb on - strandat 231.568 kb on - strandat 231.585 kb on + strandat 231.585 kb on + strandat 231.590 kb on + strandat 231.726 kb on - strand, within BACOVA_03140at 231.745 kb on + strand, within BACOVA_03140at 231.764 kb on - strand, within BACOVA_03140at 231.764 kb on - strand, within BACOVA_03140at 231.765 kb on + strand, within BACOVA_03140at 231.766 kb on - strand, within BACOVA_03140at 231.766 kb on - strand, within BACOVA_03140at 231.766 kb on - strand, within BACOVA_03140at 231.772 kb on + strand, within BACOVA_03140at 231.772 kb on + strand, within BACOVA_03140at 231.886 kb on + strand, within BACOVA_03140at 231.887 kb on - strand, within BACOVA_03140

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Per-strain Table

Position Strand Gene LocusTag Fraction b-Mannan borohydrate reduced carob seed 2.5 mg/ml (C)
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229,023 - +0.6
229,030 - +0.4
229,117 + BACOVA_03137 0.11 -0.6
229,118 - BACOVA_03137 0.11 -1.1
229,118 - BACOVA_03137 0.11 -2.3
229,118 - BACOVA_03137 0.11 +1.2
229,120 - BACOVA_03137 0.11 -0.4
229,173 + BACOVA_03137 0.17 +0.1
229,179 + BACOVA_03137 0.17 -0.4
229,191 + BACOVA_03137 0.19 -0.2
229,208 + BACOVA_03137 0.20 -0.1
229,209 - BACOVA_03137 0.20 -0.6
229,311 - BACOVA_03137 0.31 -0.4
229,358 + BACOVA_03137 0.36 -0.1
229,398 - BACOVA_03137 0.40 -0.2
229,408 + BACOVA_03137 0.41 -1.1
229,412 + BACOVA_03137 0.42 -0.6
229,412 + BACOVA_03137 0.42 -0.8
229,413 - BACOVA_03137 0.42 -0.3
229,416 + BACOVA_03137 0.42 -0.4
229,416 + BACOVA_03137 0.42 -1.9
229,417 - BACOVA_03137 0.42 +1.1
229,417 - BACOVA_03137 0.42 +2.6
229,417 - BACOVA_03137 0.42 +0.6
229,431 + BACOVA_03137 0.44 -1.2
229,431 + BACOVA_03137 0.44 +0.7
229,432 - BACOVA_03137 0.44 +0.3
229,433 + BACOVA_03137 0.44 +0.8
229,517 + BACOVA_03137 0.52 -0.9
229,518 - BACOVA_03137 0.53 +0.3
229,518 - BACOVA_03137 0.53 +2.1
229,567 + BACOVA_03137 0.58 -2.0
229,567 + BACOVA_03137 0.58 -0.3
229,568 - BACOVA_03137 0.58 -0.2
229,568 - BACOVA_03137 0.58 +0.8
229,568 - BACOVA_03137 0.58 +1.0
229,569 + BACOVA_03137 0.58 -0.4
229,569 + BACOVA_03137 0.58 -0.6
229,570 - BACOVA_03137 0.58 -2.4
229,570 - BACOVA_03137 0.58 +0.6
229,570 - BACOVA_03137 0.58 +1.0
229,575 + BACOVA_03137 0.58 -2.6
229,635 - BACOVA_03137 0.65 +0.8
229,654 - BACOVA_03137 0.67 -0.3
229,719 - BACOVA_03137 0.73 -1.0
229,821 + BACOVA_03137 0.84 +0.1
229,821 + BACOVA_03137 0.84 +1.4
229,822 - BACOVA_03137 0.84 +1.5
229,825 - BACOVA_03137 0.84 +2.1
229,836 + BACOVA_03137 0.86 -0.4
229,837 - BACOVA_03137 0.86 +0.4
229,837 - BACOVA_03137 0.86 -0.8
229,839 - BACOVA_03137 0.86 -0.1
229,914 + -0.1
229,915 - -0.4
229,915 - -0.6
229,915 - -1.6
229,920 - +0.4
229,925 - +0.8
229,925 - +0.4
229,934 - +1.7
229,986 - +0.3
230,079 + BACOVA_03138 0.13 +0.1
230,086 + BACOVA_03138 0.14 -1.2
230,086 + BACOVA_03138 0.14 -1.2
230,086 + BACOVA_03138 0.14 -0.3
230,086 + BACOVA_03138 0.14 +0.1
230,088 + BACOVA_03138 0.14 -1.1
230,089 - BACOVA_03138 0.14 +0.3
230,094 + BACOVA_03138 0.15 +0.4
230,108 - BACOVA_03138 0.16 -0.2
230,114 - BACOVA_03138 0.17 +1.0
230,143 + BACOVA_03138 0.20 -0.2
230,170 - BACOVA_03138 0.23 +0.7
230,185 - BACOVA_03138 0.24 -2.1
230,226 + BACOVA_03138 0.29 -0.7
230,227 - BACOVA_03138 0.29 -0.9
230,227 - BACOVA_03138 0.29 +2.0
230,238 + BACOVA_03138 0.30 +0.1
230,238 + BACOVA_03138 0.30 +1.0
230,239 - BACOVA_03138 0.30 -1.3
230,291 + BACOVA_03138 0.36 +0.2
230,292 - BACOVA_03138 0.36 -0.8
230,337 + BACOVA_03138 0.41 +0.1
230,337 + BACOVA_03138 0.41 +1.9
230,431 - BACOVA_03138 0.51 +0.8
230,489 - BACOVA_03138 0.57 +0.6
230,493 + BACOVA_03138 0.57 -2.0
230,494 - BACOVA_03138 0.57 -0.3
230,503 - BACOVA_03138 0.58 +0.7
230,505 + BACOVA_03138 0.59 +0.2
230,506 - BACOVA_03138 0.59 +0.4
230,506 - BACOVA_03138 0.59 -0.0
230,519 + BACOVA_03138 0.60 -1.6
230,524 - BACOVA_03138 0.61 +1.6
230,607 + BACOVA_03138 0.69 -0.9
230,635 - BACOVA_03138 0.72 +1.2
230,668 - BACOVA_03138 0.76 -1.1
230,668 - BACOVA_03138 0.76 -1.6
230,672 + BACOVA_03138 0.76 -0.9
230,672 + BACOVA_03138 0.76 +0.8
230,672 + BACOVA_03138 0.76 -0.6
230,692 + BACOVA_03138 0.78 -2.1
230,693 - BACOVA_03138 0.79 -0.8
230,695 + BACOVA_03138 0.79 +1.0
230,695 + BACOVA_03138 0.79 -1.4
230,747 + BACOVA_03138 0.84 -1.4
230,747 + BACOVA_03138 0.84 -0.6
230,748 - BACOVA_03138 0.84 -1.9
230,748 - BACOVA_03138 0.84 -0.6
230,780 + BACOVA_03138 0.88 -0.6
230,781 - BACOVA_03138 0.88 +0.4
230,793 + BACOVA_03138 0.89 +0.1
230,797 + BACOVA_03138 0.90 -1.6
230,798 - BACOVA_03138 0.90 +0.4
230,817 - -1.4
230,844 + -0.3
230,845 - -1.4
230,854 - -1.3
230,854 - +0.4
230,859 + +1.0
230,870 - -0.9
230,933 + +0.7
230,938 + +2.2
230,949 - -2.3
230,985 + BACOVA_03139 0.12 -1.7
230,986 - BACOVA_03139 0.12 +0.0
230,991 + BACOVA_03139 0.13 +0.4
230,991 + BACOVA_03139 0.13 -0.9
230,992 - BACOVA_03139 0.13 +0.4
231,023 + BACOVA_03139 0.18 +0.6
231,066 - BACOVA_03139 0.25 +0.6
231,066 - BACOVA_03139 0.25 -1.9
231,070 + BACOVA_03139 0.26 +2.4
231,108 - BACOVA_03139 0.32 +0.0
231,116 - BACOVA_03139 0.33 -0.5
231,119 + BACOVA_03139 0.34 -2.0
231,119 + BACOVA_03139 0.34 +0.4
231,119 + BACOVA_03139 0.34 -0.7
231,119 + BACOVA_03139 0.34 -0.1
231,120 - BACOVA_03139 0.34 -1.4
231,120 - BACOVA_03139 0.34 +0.7
231,120 - BACOVA_03139 0.34 +0.3
231,120 - BACOVA_03139 0.34 -2.4
231,120 - BACOVA_03139 0.34 +0.3
231,120 - BACOVA_03139 0.34 -1.1
231,212 + BACOVA_03139 0.49 -0.0
231,212 + BACOVA_03139 0.49 +0.2
231,213 - BACOVA_03139 0.49 -0.2
231,213 - BACOVA_03139 0.49 -0.7
231,299 - BACOVA_03139 0.63 +1.2
231,365 + BACOVA_03139 0.74 +1.4
231,382 - BACOVA_03139 0.76 -1.6
231,382 - BACOVA_03139 0.76 -0.3
231,384 - BACOVA_03139 0.77 +1.4
231,384 - BACOVA_03139 0.77 +1.0
231,384 - BACOVA_03139 0.77 -4.0
231,440 - BACOVA_03139 0.86 +0.1
231,553 + -0.8
231,554 - -0.9
231,554 - -0.1
231,568 - -0.6
231,585 + +0.1
231,585 + +2.4
231,590 + +0.5
231,726 - BACOVA_03140 0.16 +1.1
231,745 + BACOVA_03140 0.17 -1.0
231,764 - BACOVA_03140 0.19 +0.3
231,764 - BACOVA_03140 0.19 +0.4
231,765 + BACOVA_03140 0.19 +0.4
231,766 - BACOVA_03140 0.19 +2.7
231,766 - BACOVA_03140 0.19 +0.1
231,766 - BACOVA_03140 0.19 -1.6
231,772 + BACOVA_03140 0.19 -1.4
231,772 + BACOVA_03140 0.19 +0.4
231,886 + BACOVA_03140 0.28 -0.7
231,887 - BACOVA_03140 0.29 -0.1

Or see this region's nucleotide sequence