Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02987

Experiment: b-Mannan borohydrate reduced carob seed 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02986 and BACOVA_02987 are separated by 4 nucleotidesBACOVA_02987 and BACOVA_02988 are separated by 236 nucleotidesBACOVA_02988 and BACOVA_02989 are separated by 21 nucleotides BACOVA_02986: BACOVA_02986 - site-specific recombinase, phage integrase family, at 65,458 to 66,675 _02986 BACOVA_02987: BACOVA_02987 - hypothetical protein, at 66,680 to 67,222 _02987 BACOVA_02988: BACOVA_02988 - DNA binding domain, excisionase family, at 67,459 to 67,752 _02988 BACOVA_02989: BACOVA_02989 - hypothetical protein, at 67,774 to 68,946 _02989 Position (kb) 66 67 68Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 65.835 kb on + strand, within BACOVA_02986at 65.836 kb on - strand, within BACOVA_02986at 65.846 kb on - strand, within BACOVA_02986at 65.879 kb on + strand, within BACOVA_02986at 65.880 kb on - strand, within BACOVA_02986at 65.880 kb on - strand, within BACOVA_02986at 65.923 kb on + strand, within BACOVA_02986at 65.923 kb on + strand, within BACOVA_02986at 65.925 kb on + strand, within BACOVA_02986at 65.925 kb on + strand, within BACOVA_02986at 65.926 kb on - strand, within BACOVA_02986at 65.928 kb on + strand, within BACOVA_02986at 65.928 kb on + strand, within BACOVA_02986at 65.928 kb on + strand, within BACOVA_02986at 65.933 kb on - strand, within BACOVA_02986at 65.933 kb on - strand, within BACOVA_02986at 65.937 kb on + strand, within BACOVA_02986at 65.938 kb on - strand, within BACOVA_02986at 65.994 kb on + strand, within BACOVA_02986at 66.017 kb on + strand, within BACOVA_02986at 66.022 kb on + strand, within BACOVA_02986at 66.022 kb on + strand, within BACOVA_02986at 66.023 kb on - strand, within BACOVA_02986at 66.023 kb on - strand, within BACOVA_02986at 66.025 kb on + strand, within BACOVA_02986at 66.059 kb on + strand, within BACOVA_02986at 66.071 kb on + strand, within BACOVA_02986at 66.071 kb on + strand, within BACOVA_02986at 66.075 kb on - strand, within BACOVA_02986at 66.115 kb on - strand, within BACOVA_02986at 66.126 kb on - strand, within BACOVA_02986at 66.171 kb on + strand, within BACOVA_02986at 66.172 kb on - strand, within BACOVA_02986at 66.172 kb on - strand, within BACOVA_02986at 66.172 kb on - strand, within BACOVA_02986at 66.179 kb on - strand, within BACOVA_02986at 66.200 kb on + strand, within BACOVA_02986at 66.214 kb on - strand, within BACOVA_02986at 66.216 kb on - strand, within BACOVA_02986at 66.219 kb on - strand, within BACOVA_02986at 66.224 kb on + strand, within BACOVA_02986at 66.224 kb on + strand, within BACOVA_02986at 66.225 kb on - strand, within BACOVA_02986at 66.234 kb on + strand, within BACOVA_02986at 66.327 kb on + strand, within BACOVA_02986at 66.357 kb on - strand, within BACOVA_02986at 66.403 kb on + strand, within BACOVA_02986at 66.418 kb on - strand, within BACOVA_02986at 66.439 kb on - strand, within BACOVA_02986at 66.451 kb on - strand, within BACOVA_02986at 66.471 kb on + strand, within BACOVA_02986at 66.495 kb on + strand, within BACOVA_02986at 66.496 kb on - strand, within BACOVA_02986at 66.496 kb on - strand, within BACOVA_02986at 66.496 kb on - strand, within BACOVA_02986at 66.497 kb on + strand, within BACOVA_02986at 66.544 kb on - strand, within BACOVA_02986at 66.552 kb on + strand, within BACOVA_02986at 66.553 kb on - strand, within BACOVA_02986at 66.555 kb on + strandat 66.556 kb on - strandat 66.594 kb on - strandat 66.611 kb on - strandat 66.645 kb on + strandat 66.657 kb on - strandat 66.667 kb on - strandat 66.673 kb on + strandat 66.709 kb on + strandat 66.710 kb on - strandat 66.711 kb on + strandat 66.724 kb on - strandat 66.724 kb on - strandat 66.739 kb on + strand, within BACOVA_02987at 66.740 kb on - strand, within BACOVA_02987at 66.754 kb on + strand, within BACOVA_02987at 66.779 kb on - strand, within BACOVA_02987at 66.780 kb on + strand, within BACOVA_02987at 66.780 kb on + strand, within BACOVA_02987at 66.781 kb on - strand, within BACOVA_02987at 66.784 kb on + strand, within BACOVA_02987at 66.785 kb on - strand, within BACOVA_02987at 66.826 kb on + strand, within BACOVA_02987at 66.843 kb on + strand, within BACOVA_02987at 66.843 kb on + strand, within BACOVA_02987at 66.843 kb on + strand, within BACOVA_02987at 66.844 kb on - strand, within BACOVA_02987at 66.844 kb on - strand, within BACOVA_02987at 66.844 kb on - strand, within BACOVA_02987at 66.851 kb on - strand, within BACOVA_02987at 66.852 kb on + strand, within BACOVA_02987at 66.857 kb on - strand, within BACOVA_02987at 66.857 kb on - strand, within BACOVA_02987at 66.870 kb on - strand, within BACOVA_02987at 66.881 kb on - strand, within BACOVA_02987at 66.913 kb on + strand, within BACOVA_02987at 66.913 kb on + strand, within BACOVA_02987at 66.913 kb on + strand, within BACOVA_02987at 66.914 kb on - strand, within BACOVA_02987at 66.915 kb on + strand, within BACOVA_02987at 66.915 kb on + strand, within BACOVA_02987at 66.917 kb on + strand, within BACOVA_02987at 66.917 kb on + strand, within BACOVA_02987at 66.920 kb on - strand, within BACOVA_02987at 66.931 kb on + strand, within BACOVA_02987at 66.932 kb on - strand, within BACOVA_02987at 66.947 kb on - strand, within BACOVA_02987at 66.953 kb on - strand, within BACOVA_02987at 66.966 kb on + strand, within BACOVA_02987at 66.966 kb on + strand, within BACOVA_02987at 66.967 kb on - strand, within BACOVA_02987at 67.011 kb on + strand, within BACOVA_02987at 67.012 kb on - strand, within BACOVA_02987at 67.024 kb on + strand, within BACOVA_02987at 67.063 kb on + strand, within BACOVA_02987at 67.063 kb on + strand, within BACOVA_02987at 67.064 kb on - strand, within BACOVA_02987at 67.064 kb on - strand, within BACOVA_02987at 67.065 kb on + strand, within BACOVA_02987at 67.080 kb on - strand, within BACOVA_02987at 67.085 kb on - strand, within BACOVA_02987at 67.099 kb on - strand, within BACOVA_02987at 67.116 kb on - strand, within BACOVA_02987at 67.140 kb on + strand, within BACOVA_02987at 67.158 kb on + strand, within BACOVA_02987at 67.175 kb on - strandat 67.189 kb on - strandat 67.220 kb on + strandat 67.232 kb on + strandat 67.293 kb on + strandat 67.316 kb on - strandat 67.316 kb on - strandat 67.336 kb on - strandat 67.344 kb on + strandat 67.344 kb on + strandat 67.345 kb on - strandat 67.351 kb on + strandat 67.351 kb on + strandat 67.352 kb on - strandat 67.352 kb on - strandat 67.352 kb on - strandat 67.360 kb on - strandat 67.360 kb on - strandat 67.383 kb on - strandat 67.396 kb on - strandat 67.409 kb on + strandat 67.409 kb on + strandat 67.409 kb on + strandat 67.412 kb on - strandat 67.453 kb on + strandat 67.479 kb on - strandat 67.553 kb on + strand, within BACOVA_02988at 67.608 kb on - strand, within BACOVA_02988at 67.611 kb on - strand, within BACOVA_02988at 67.611 kb on - strand, within BACOVA_02988at 67.611 kb on - strand, within BACOVA_02988at 67.658 kb on + strand, within BACOVA_02988at 67.724 kb on - strandat 67.749 kb on - strandat 67.751 kb on - strandat 67.751 kb on - strandat 67.769 kb on - strandat 67.845 kb on + strandat 67.845 kb on + strandat 67.845 kb on + strandat 67.967 kb on - strand, within BACOVA_02989at 68.114 kb on - strand, within BACOVA_02989at 68.210 kb on - strand, within BACOVA_02989

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Per-strain Table

Position Strand Gene LocusTag Fraction b-Mannan borohydrate reduced carob seed 2.5 mg/ml (C)
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65,835 + BACOVA_02986 0.31 +1.2
65,836 - BACOVA_02986 0.31 -1.1
65,846 - BACOVA_02986 0.32 -0.5
65,879 + BACOVA_02986 0.35 +0.9
65,880 - BACOVA_02986 0.35 -1.6
65,880 - BACOVA_02986 0.35 +0.4
65,923 + BACOVA_02986 0.38 -0.3
65,923 + BACOVA_02986 0.38 +1.2
65,925 + BACOVA_02986 0.38 -0.2
65,925 + BACOVA_02986 0.38 -0.9
65,926 - BACOVA_02986 0.38 -1.1
65,928 + BACOVA_02986 0.39 -0.1
65,928 + BACOVA_02986 0.39 -0.4
65,928 + BACOVA_02986 0.39 -1.6
65,933 - BACOVA_02986 0.39 -0.7
65,933 - BACOVA_02986 0.39 +0.6
65,937 + BACOVA_02986 0.39 +0.9
65,938 - BACOVA_02986 0.39 +0.8
65,994 + BACOVA_02986 0.44 +1.8
66,017 + BACOVA_02986 0.46 -0.9
66,022 + BACOVA_02986 0.46 -1.3
66,022 + BACOVA_02986 0.46 -0.6
66,023 - BACOVA_02986 0.46 -0.7
66,023 - BACOVA_02986 0.46 +0.3
66,025 + BACOVA_02986 0.47 +3.0
66,059 + BACOVA_02986 0.49 +1.7
66,071 + BACOVA_02986 0.50 -0.1
66,071 + BACOVA_02986 0.50 +0.4
66,075 - BACOVA_02986 0.51 +0.3
66,115 - BACOVA_02986 0.54 -0.6
66,126 - BACOVA_02986 0.55 +0.7
66,171 + BACOVA_02986 0.59 -0.6
66,172 - BACOVA_02986 0.59 +1.4
66,172 - BACOVA_02986 0.59 -0.6
66,172 - BACOVA_02986 0.59 -0.9
66,179 - BACOVA_02986 0.59 +1.4
66,200 + BACOVA_02986 0.61 +0.3
66,214 - BACOVA_02986 0.62 +0.7
66,216 - BACOVA_02986 0.62 +0.1
66,219 - BACOVA_02986 0.62 +0.2
66,224 + BACOVA_02986 0.63 +1.3
66,224 + BACOVA_02986 0.63 +0.4
66,225 - BACOVA_02986 0.63 -2.3
66,234 + BACOVA_02986 0.64 +1.0
66,327 + BACOVA_02986 0.71 -1.0
66,357 - BACOVA_02986 0.74 -1.7
66,403 + BACOVA_02986 0.78 +1.0
66,418 - BACOVA_02986 0.79 -1.0
66,439 - BACOVA_02986 0.81 +0.6
66,451 - BACOVA_02986 0.82 -0.1
66,471 + BACOVA_02986 0.83 -0.1
66,495 + BACOVA_02986 0.85 +1.8
66,496 - BACOVA_02986 0.85 -0.3
66,496 - BACOVA_02986 0.85 +0.5
66,496 - BACOVA_02986 0.85 -0.8
66,497 + BACOVA_02986 0.85 -1.6
66,544 - BACOVA_02986 0.89 -1.0
66,552 + BACOVA_02986 0.90 +1.0
66,553 - BACOVA_02986 0.90 -0.3
66,555 + +3.8
66,556 - -0.1
66,594 - +0.6
66,611 - -2.0
66,645 + +1.1
66,657 - -0.1
66,667 - -0.9
66,673 + +0.7
66,709 + +0.4
66,710 - +1.2
66,711 + +0.4
66,724 - +1.0
66,724 - -0.2
66,739 + BACOVA_02987 0.11 +0.6
66,740 - BACOVA_02987 0.11 +0.4
66,754 + BACOVA_02987 0.14 +0.7
66,779 - BACOVA_02987 0.18 +0.4
66,780 + BACOVA_02987 0.18 -1.4
66,780 + BACOVA_02987 0.18 +0.1
66,781 - BACOVA_02987 0.19 -0.1
66,784 + BACOVA_02987 0.19 +3.0
66,785 - BACOVA_02987 0.19 +0.3
66,826 + BACOVA_02987 0.27 +0.1
66,843 + BACOVA_02987 0.30 -0.0
66,843 + BACOVA_02987 0.30 +0.2
66,843 + BACOVA_02987 0.30 -2.3
66,844 - BACOVA_02987 0.30 -1.5
66,844 - BACOVA_02987 0.30 -1.5
66,844 - BACOVA_02987 0.30 +0.4
66,851 - BACOVA_02987 0.31 +0.1
66,852 + BACOVA_02987 0.32 +0.4
66,857 - BACOVA_02987 0.33 -0.6
66,857 - BACOVA_02987 0.33 +2.0
66,870 - BACOVA_02987 0.35 +1.4
66,881 - BACOVA_02987 0.37 -0.1
66,913 + BACOVA_02987 0.43 +1.0
66,913 + BACOVA_02987 0.43 +1.4
66,913 + BACOVA_02987 0.43 -0.4
66,914 - BACOVA_02987 0.43 +1.2
66,915 + BACOVA_02987 0.43 -0.7
66,915 + BACOVA_02987 0.43 +0.6
66,917 + BACOVA_02987 0.44 +0.9
66,917 + BACOVA_02987 0.44 -0.1
66,920 - BACOVA_02987 0.44 +0.8
66,931 + BACOVA_02987 0.46 +1.2
66,932 - BACOVA_02987 0.46 -1.3
66,947 - BACOVA_02987 0.49 +1.0
66,953 - BACOVA_02987 0.50 -0.5
66,966 + BACOVA_02987 0.53 +2.0
66,966 + BACOVA_02987 0.53 +0.6
66,967 - BACOVA_02987 0.53 +0.4
67,011 + BACOVA_02987 0.61 -0.1
67,012 - BACOVA_02987 0.61 -1.6
67,024 + BACOVA_02987 0.63 +0.7
67,063 + BACOVA_02987 0.71 -1.2
67,063 + BACOVA_02987 0.71 -0.9
67,064 - BACOVA_02987 0.71 +1.3
67,064 - BACOVA_02987 0.71 +2.0
67,065 + BACOVA_02987 0.71 +0.9
67,080 - BACOVA_02987 0.74 -0.1
67,085 - BACOVA_02987 0.75 +2.0
67,099 - BACOVA_02987 0.77 -2.1
67,116 - BACOVA_02987 0.80 +2.0
67,140 + BACOVA_02987 0.85 +1.9
67,158 + BACOVA_02987 0.88 -1.0
67,175 - -0.9
67,189 - +0.7
67,220 + -0.1
67,232 + -1.1
67,293 + +1.7
67,316 - -0.0
67,316 - -0.2
67,336 - -0.7
67,344 + -0.3
67,344 + -0.3
67,345 - -0.4
67,351 + -0.6
67,351 + +0.5
67,352 - -0.2
67,352 - -0.2
67,352 - -1.4
67,360 - +0.0
67,360 - +0.9
67,383 - -0.6
67,396 - -1.1
67,409 + -1.6
67,409 + +0.5
67,409 + -0.1
67,412 - +0.1
67,453 + -0.6
67,479 - -0.1
67,553 + BACOVA_02988 0.32 +0.1
67,608 - BACOVA_02988 0.51 -0.1
67,611 - BACOVA_02988 0.52 -0.6
67,611 - BACOVA_02988 0.52 +1.0
67,611 - BACOVA_02988 0.52 +1.1
67,658 + BACOVA_02988 0.68 -0.4
67,724 - -0.7
67,749 - -1.0
67,751 - -0.0
67,751 - +0.8
67,769 - -1.0
67,845 + -1.1
67,845 + +0.7
67,845 + +2.0
67,967 - BACOVA_02989 0.16 +1.0
68,114 - BACOVA_02989 0.29 +0.5
68,210 - BACOVA_02989 0.37 -1.3

Or see this region's nucleotide sequence