Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02953

Experiment: b-Mannan borohydrate reduced carob seed 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02952 and BACOVA_02953 are separated by 85 nucleotidesBACOVA_02953 and BACOVA_02954 are separated by 50 nucleotides BACOVA_02952: BACOVA_02952 - sigma factor regulatory protein, FecR/PupR family, at 25,855 to 26,868 _02952 BACOVA_02953: BACOVA_02953 - hypothetical protein, at 26,954 to 27,085 _02953 BACOVA_02954: BACOVA_02954 - TonB-linked outer membrane protein, SusC/RagA family, at 27,136 to 30,504 _02954 Position (kb) 26 27 28Strain fitness (log2 ratio) -2 -1 0 1 2 3at 26.035 kb on + strand, within BACOVA_02952at 26.035 kb on + strand, within BACOVA_02952at 26.041 kb on - strand, within BACOVA_02952at 26.041 kb on - strand, within BACOVA_02952at 26.058 kb on + strand, within BACOVA_02952at 26.064 kb on + strand, within BACOVA_02952at 26.074 kb on - strand, within BACOVA_02952at 26.163 kb on - strand, within BACOVA_02952at 26.186 kb on - strand, within BACOVA_02952at 26.266 kb on + strand, within BACOVA_02952at 26.267 kb on - strand, within BACOVA_02952at 26.280 kb on + strand, within BACOVA_02952at 26.280 kb on + strand, within BACOVA_02952at 26.281 kb on - strand, within BACOVA_02952at 26.288 kb on + strand, within BACOVA_02952at 26.340 kb on + strand, within BACOVA_02952at 26.340 kb on + strand, within BACOVA_02952at 26.411 kb on + strand, within BACOVA_02952at 26.412 kb on - strand, within BACOVA_02952at 26.439 kb on - strand, within BACOVA_02952at 26.455 kb on - strand, within BACOVA_02952at 26.455 kb on - strand, within BACOVA_02952at 26.489 kb on + strand, within BACOVA_02952at 26.489 kb on + strand, within BACOVA_02952at 26.489 kb on + strand, within BACOVA_02952at 26.490 kb on - strand, within BACOVA_02952at 26.490 kb on - strand, within BACOVA_02952at 26.492 kb on + strand, within BACOVA_02952at 26.499 kb on - strand, within BACOVA_02952at 26.524 kb on - strand, within BACOVA_02952at 26.524 kb on - strand, within BACOVA_02952at 26.576 kb on + strand, within BACOVA_02952at 26.580 kb on - strand, within BACOVA_02952at 26.580 kb on - strand, within BACOVA_02952at 26.580 kb on - strand, within BACOVA_02952at 26.580 kb on - strand, within BACOVA_02952at 26.606 kb on + strand, within BACOVA_02952at 26.607 kb on - strand, within BACOVA_02952at 26.704 kb on - strand, within BACOVA_02952at 26.704 kb on - strand, within BACOVA_02952at 26.714 kb on + strand, within BACOVA_02952at 26.714 kb on + strand, within BACOVA_02952at 26.714 kb on + strand, within BACOVA_02952at 26.715 kb on - strand, within BACOVA_02952at 26.715 kb on - strand, within BACOVA_02952at 26.715 kb on - strand, within BACOVA_02952at 26.715 kb on - strand, within BACOVA_02952at 26.718 kb on + strand, within BACOVA_02952at 26.741 kb on + strand, within BACOVA_02952at 26.759 kb on - strand, within BACOVA_02952at 26.788 kb on - strandat 26.829 kb on - strandat 26.833 kb on + strandat 26.834 kb on - strandat 26.834 kb on - strandat 26.835 kb on + strandat 26.836 kb on - strandat 26.854 kb on - strandat 26.855 kb on + strandat 26.855 kb on + strandat 26.855 kb on + strandat 26.856 kb on - strandat 26.860 kb on - strandat 26.860 kb on - strandat 26.860 kb on - strandat 26.866 kb on + strandat 26.885 kb on + strandat 26.886 kb on - strandat 26.886 kb on - strandat 26.886 kb on - strandat 26.886 kb on - strandat 26.887 kb on + strandat 26.891 kb on - strandat 26.894 kb on - strandat 26.894 kb on - strandat 26.909 kb on + strandat 26.923 kb on + strandat 26.923 kb on + strandat 26.936 kb on + strandat 26.938 kb on + strandat 26.945 kb on - strandat 26.955 kb on + strandat 26.960 kb on + strandat 26.961 kb on - strandat 27.081 kb on + strandat 27.081 kb on + strandat 27.082 kb on - strandat 27.082 kb on - strandat 27.082 kb on - strandat 27.103 kb on - strandat 27.121 kb on + strandat 27.143 kb on - strandat 27.164 kb on - strandat 27.186 kb on + strandat 27.191 kb on + strandat 27.191 kb on + strandat 27.191 kb on + strandat 27.192 kb on - strandat 27.192 kb on - strandat 27.192 kb on - strandat 27.192 kb on - strandat 27.192 kb on - strandat 27.287 kb on + strandat 27.292 kb on - strandat 27.388 kb on + strandat 27.389 kb on - strandat 27.389 kb on - strandat 27.411 kb on + strandat 27.505 kb on - strand, within BACOVA_02954at 27.517 kb on - strand, within BACOVA_02954at 27.522 kb on - strand, within BACOVA_02954at 27.522 kb on - strand, within BACOVA_02954at 27.599 kb on + strand, within BACOVA_02954at 27.600 kb on - strand, within BACOVA_02954at 27.613 kb on + strand, within BACOVA_02954at 27.613 kb on + strand, within BACOVA_02954at 27.613 kb on + strand, within BACOVA_02954at 27.614 kb on - strand, within BACOVA_02954at 27.614 kb on - strand, within BACOVA_02954at 27.644 kb on + strand, within BACOVA_02954at 27.675 kb on - strand, within BACOVA_02954at 27.710 kb on + strand, within BACOVA_02954at 27.711 kb on - strand, within BACOVA_02954at 27.711 kb on - strand, within BACOVA_02954at 27.711 kb on - strand, within BACOVA_02954at 27.743 kb on + strand, within BACOVA_02954at 27.753 kb on + strand, within BACOVA_02954at 27.795 kb on + strand, within BACOVA_02954at 27.803 kb on + strand, within BACOVA_02954at 27.804 kb on - strand, within BACOVA_02954at 27.804 kb on - strand, within BACOVA_02954at 27.810 kb on + strand, within BACOVA_02954at 27.810 kb on + strand, within BACOVA_02954at 27.811 kb on - strand, within BACOVA_02954at 27.844 kb on - strand, within BACOVA_02954at 27.852 kb on + strand, within BACOVA_02954at 27.853 kb on - strand, within BACOVA_02954at 27.885 kb on + strand, within BACOVA_02954at 27.910 kb on + strand, within BACOVA_02954at 27.910 kb on + strand, within BACOVA_02954at 27.911 kb on - strand, within BACOVA_02954at 27.911 kb on - strand, within BACOVA_02954at 27.911 kb on - strand, within BACOVA_02954at 27.926 kb on + strand, within BACOVA_02954at 27.947 kb on + strand, within BACOVA_02954at 27.947 kb on + strand, within BACOVA_02954at 28.024 kb on - strand, within BACOVA_02954at 28.026 kb on - strand, within BACOVA_02954at 28.032 kb on + strand, within BACOVA_02954at 28.033 kb on - strand, within BACOVA_02954at 28.062 kb on + strand, within BACOVA_02954at 28.062 kb on + strand, within BACOVA_02954at 28.067 kb on - strand, within BACOVA_02954

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Per-strain Table

Position Strand Gene LocusTag Fraction b-Mannan borohydrate reduced carob seed 2.5 mg/ml (C)
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26,035 + BACOVA_02952 0.18 -0.1
26,035 + BACOVA_02952 0.18 -1.1
26,041 - BACOVA_02952 0.18 +0.4
26,041 - BACOVA_02952 0.18 -1.0
26,058 + BACOVA_02952 0.20 -1.1
26,064 + BACOVA_02952 0.21 +0.3
26,074 - BACOVA_02952 0.22 -0.5
26,163 - BACOVA_02952 0.30 -0.0
26,186 - BACOVA_02952 0.33 +0.4
26,266 + BACOVA_02952 0.41 +0.1
26,267 - BACOVA_02952 0.41 -1.0
26,280 + BACOVA_02952 0.42 -0.8
26,280 + BACOVA_02952 0.42 -0.3
26,281 - BACOVA_02952 0.42 -0.9
26,288 + BACOVA_02952 0.43 -1.4
26,340 + BACOVA_02952 0.48 -2.0
26,340 + BACOVA_02952 0.48 -1.1
26,411 + BACOVA_02952 0.55 -0.9
26,412 - BACOVA_02952 0.55 -0.2
26,439 - BACOVA_02952 0.58 -0.3
26,455 - BACOVA_02952 0.59 +0.0
26,455 - BACOVA_02952 0.59 -0.3
26,489 + BACOVA_02952 0.63 -0.9
26,489 + BACOVA_02952 0.63 +0.3
26,489 + BACOVA_02952 0.63 -2.0
26,490 - BACOVA_02952 0.63 +0.4
26,490 - BACOVA_02952 0.63 -0.1
26,492 + BACOVA_02952 0.63 -1.1
26,499 - BACOVA_02952 0.64 +0.6
26,524 - BACOVA_02952 0.66 +1.0
26,524 - BACOVA_02952 0.66 +0.0
26,576 + BACOVA_02952 0.71 -0.4
26,580 - BACOVA_02952 0.71 +0.1
26,580 - BACOVA_02952 0.71 -1.1
26,580 - BACOVA_02952 0.71 +0.5
26,580 - BACOVA_02952 0.71 -0.1
26,606 + BACOVA_02952 0.74 -0.6
26,607 - BACOVA_02952 0.74 -0.0
26,704 - BACOVA_02952 0.84 -1.8
26,704 - BACOVA_02952 0.84 -0.6
26,714 + BACOVA_02952 0.85 -1.1
26,714 + BACOVA_02952 0.85 -0.1
26,714 + BACOVA_02952 0.85 -0.7
26,715 - BACOVA_02952 0.85 +0.2
26,715 - BACOVA_02952 0.85 +0.1
26,715 - BACOVA_02952 0.85 -1.0
26,715 - BACOVA_02952 0.85 -0.1
26,718 + BACOVA_02952 0.85 -2.1
26,741 + BACOVA_02952 0.87 +0.3
26,759 - BACOVA_02952 0.89 +0.4
26,788 - -0.6
26,829 - +1.0
26,833 + -0.6
26,834 - +0.3
26,834 - -0.6
26,835 + -1.0
26,836 - +0.0
26,854 - +0.4
26,855 + -0.6
26,855 + -0.6
26,855 + -1.7
26,856 - +0.6
26,860 - -2.6
26,860 - +0.1
26,860 - +0.2
26,866 + +0.9
26,885 + -0.3
26,886 - -0.3
26,886 - -0.1
26,886 - -1.5
26,886 - +0.5
26,887 + -0.6
26,891 - -0.4
26,894 - +0.8
26,894 - -0.6
26,909 + -1.6
26,923 + +0.8
26,923 + +2.9
26,936 + +1.1
26,938 + -0.1
26,945 - +0.3
26,955 + -0.4
26,960 + -0.8
26,961 - -1.7
27,081 + -1.6
27,081 + +0.9
27,082 - +0.9
27,082 - +0.2
27,082 - +0.1
27,103 - -0.6
27,121 + +0.0
27,143 - +0.2
27,164 - +0.2
27,186 + +0.6
27,191 + -1.1
27,191 + -0.8
27,191 + -1.1
27,192 - -1.1
27,192 - -0.1
27,192 - +0.5
27,192 - -0.3
27,192 - +0.7
27,287 + -0.4
27,292 - -1.6
27,388 + -0.0
27,389 - +0.2
27,389 - +0.9
27,411 + -0.9
27,505 - BACOVA_02954 0.11 -0.4
27,517 - BACOVA_02954 0.11 -0.8
27,522 - BACOVA_02954 0.11 -0.4
27,522 - BACOVA_02954 0.11 -1.6
27,599 + BACOVA_02954 0.14 -0.3
27,600 - BACOVA_02954 0.14 +0.4
27,613 + BACOVA_02954 0.14 -0.7
27,613 + BACOVA_02954 0.14 +0.3
27,613 + BACOVA_02954 0.14 +1.1
27,614 - BACOVA_02954 0.14 -0.6
27,614 - BACOVA_02954 0.14 -0.0
27,644 + BACOVA_02954 0.15 +0.6
27,675 - BACOVA_02954 0.16 -0.3
27,710 + BACOVA_02954 0.17 +0.7
27,711 - BACOVA_02954 0.17 +0.2
27,711 - BACOVA_02954 0.17 -0.4
27,711 - BACOVA_02954 0.17 +0.2
27,743 + BACOVA_02954 0.18 +0.8
27,753 + BACOVA_02954 0.18 +0.0
27,795 + BACOVA_02954 0.20 -0.4
27,803 + BACOVA_02954 0.20 +0.2
27,804 - BACOVA_02954 0.20 +0.9
27,804 - BACOVA_02954 0.20 +0.4
27,810 + BACOVA_02954 0.20 -0.5
27,810 + BACOVA_02954 0.20 -0.2
27,811 - BACOVA_02954 0.20 -1.3
27,844 - BACOVA_02954 0.21 -0.6
27,852 + BACOVA_02954 0.21 +0.7
27,853 - BACOVA_02954 0.21 -0.3
27,885 + BACOVA_02954 0.22 +0.6
27,910 + BACOVA_02954 0.23 +1.1
27,910 + BACOVA_02954 0.23 +0.2
27,911 - BACOVA_02954 0.23 +1.7
27,911 - BACOVA_02954 0.23 +0.3
27,911 - BACOVA_02954 0.23 -1.2
27,926 + BACOVA_02954 0.23 -1.1
27,947 + BACOVA_02954 0.24 +1.1
27,947 + BACOVA_02954 0.24 +0.0
28,024 - BACOVA_02954 0.26 -0.1
28,026 - BACOVA_02954 0.26 +1.3
28,032 + BACOVA_02954 0.27 -0.6
28,033 - BACOVA_02954 0.27 -1.6
28,062 + BACOVA_02954 0.27 -0.6
28,062 + BACOVA_02954 0.27 -1.6
28,067 - BACOVA_02954 0.28 -1.0

Or see this region's nucleotide sequence