Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02460

Experiment: b-Mannan borohydrate reduced carob seed 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02458 and BACOVA_02459 overlap by 22 nucleotidesBACOVA_02459 and BACOVA_02460 overlap by 4 nucleotidesBACOVA_02460 and BACOVA_02461 are separated by 1 nucleotides BACOVA_02458: BACOVA_02458 - polysaccharide biosynthesis protein, at 219,829 to 221,364 _02458 BACOVA_02459: BACOVA_02459 - acyltransferase, at 221,343 to 222,335 _02459 BACOVA_02460: BACOVA_02460 - 4Fe-4S binding domain protein, at 222,332 to 223,480 _02460 BACOVA_02461: BACOVA_02461 - hypothetical protein, at 223,482 to 224,564 _02461 Position (kb) 222 223 224Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 221.372 kb on + strandat 221.372 kb on + strandat 221.383 kb on + strandat 221.388 kb on - strandat 221.399 kb on + strandat 221.420 kb on - strandat 221.440 kb on + strandat 221.441 kb on - strandat 221.442 kb on + strandat 221.442 kb on + strandat 221.443 kb on - strand, within BACOVA_02459at 221.443 kb on - strand, within BACOVA_02459at 221.449 kb on + strand, within BACOVA_02459at 221.505 kb on + strand, within BACOVA_02459at 221.530 kb on + strand, within BACOVA_02459at 221.531 kb on - strand, within BACOVA_02459at 221.546 kb on - strand, within BACOVA_02459at 221.556 kb on - strand, within BACOVA_02459at 221.589 kb on - strand, within BACOVA_02459at 221.589 kb on - strand, within BACOVA_02459at 221.609 kb on + strand, within BACOVA_02459at 221.610 kb on - strand, within BACOVA_02459at 221.610 kb on - strand, within BACOVA_02459at 221.626 kb on + strand, within BACOVA_02459at 221.627 kb on - strand, within BACOVA_02459at 221.627 kb on - strand, within BACOVA_02459at 221.644 kb on - strand, within BACOVA_02459at 221.644 kb on - strand, within BACOVA_02459at 221.644 kb on - strand, within BACOVA_02459at 221.644 kb on - strand, within BACOVA_02459at 221.685 kb on - strand, within BACOVA_02459at 221.715 kb on + strand, within BACOVA_02459at 221.731 kb on + strand, within BACOVA_02459at 221.731 kb on + strand, within BACOVA_02459at 221.740 kb on + strand, within BACOVA_02459at 221.759 kb on - strand, within BACOVA_02459at 221.767 kb on - strand, within BACOVA_02459at 222.814 kb on + strand, within BACOVA_02460at 222.850 kb on - strand, within BACOVA_02460at 222.850 kb on - strand, within BACOVA_02460at 223.039 kb on + strand, within BACOVA_02460at 223.039 kb on + strand, within BACOVA_02460at 223.039 kb on + strand, within BACOVA_02460at 223.040 kb on - strand, within BACOVA_02460at 223.040 kb on - strand, within BACOVA_02460at 223.046 kb on - strand, within BACOVA_02460at 223.051 kb on + strand, within BACOVA_02460at 223.052 kb on - strand, within BACOVA_02460at 223.059 kb on + strand, within BACOVA_02460at 223.065 kb on + strand, within BACOVA_02460at 223.065 kb on + strand, within BACOVA_02460at 223.070 kb on + strand, within BACOVA_02460at 223.118 kb on - strand, within BACOVA_02460at 223.121 kb on + strand, within BACOVA_02460at 223.191 kb on - strand, within BACOVA_02460at 223.226 kb on - strand, within BACOVA_02460at 223.226 kb on - strand, within BACOVA_02460at 223.271 kb on + strand, within BACOVA_02460at 223.282 kb on + strand, within BACOVA_02460at 223.294 kb on - strand, within BACOVA_02460at 223.294 kb on - strand, within BACOVA_02460at 223.294 kb on - strand, within BACOVA_02460at 223.341 kb on + strand, within BACOVA_02460at 223.342 kb on - strand, within BACOVA_02460at 223.448 kb on - strandat 223.482 kb on - strandat 223.490 kb on - strandat 223.490 kb on - strandat 223.522 kb on - strandat 223.550 kb on - strandat 223.550 kb on - strandat 223.550 kb on - strandat 223.550 kb on - strandat 223.557 kb on + strandat 223.558 kb on - strandat 223.576 kb on - strandat 223.592 kb on - strand, within BACOVA_02461at 223.597 kb on - strand, within BACOVA_02461at 223.613 kb on - strand, within BACOVA_02461at 223.616 kb on + strand, within BACOVA_02461at 223.617 kb on - strand, within BACOVA_02461at 223.617 kb on - strand, within BACOVA_02461at 223.617 kb on - strand, within BACOVA_02461at 223.628 kb on + strand, within BACOVA_02461at 223.629 kb on - strand, within BACOVA_02461at 223.629 kb on - strand, within BACOVA_02461at 223.629 kb on - strand, within BACOVA_02461at 223.659 kb on - strand, within BACOVA_02461at 223.659 kb on - strand, within BACOVA_02461at 223.746 kb on - strand, within BACOVA_02461at 223.757 kb on - strand, within BACOVA_02461at 223.757 kb on - strand, within BACOVA_02461at 223.779 kb on - strand, within BACOVA_02461at 223.806 kb on + strand, within BACOVA_02461at 223.807 kb on - strand, within BACOVA_02461at 223.812 kb on - strand, within BACOVA_02461at 223.814 kb on - strand, within BACOVA_02461at 223.908 kb on - strand, within BACOVA_02461at 223.915 kb on - strand, within BACOVA_02461at 223.922 kb on + strand, within BACOVA_02461at 223.923 kb on - strand, within BACOVA_02461at 223.923 kb on - strand, within BACOVA_02461at 223.976 kb on - strand, within BACOVA_02461at 223.995 kb on - strand, within BACOVA_02461at 224.041 kb on + strand, within BACOVA_02461at 224.041 kb on + strand, within BACOVA_02461at 224.081 kb on - strand, within BACOVA_02461at 224.108 kb on - strand, within BACOVA_02461at 224.112 kb on - strand, within BACOVA_02461at 224.150 kb on - strand, within BACOVA_02461at 224.150 kb on - strand, within BACOVA_02461at 224.150 kb on - strand, within BACOVA_02461at 224.193 kb on - strand, within BACOVA_02461at 224.193 kb on - strand, within BACOVA_02461at 224.197 kb on - strand, within BACOVA_02461at 224.231 kb on - strand, within BACOVA_02461at 224.387 kb on - strand, within BACOVA_02461at 224.433 kb on - strand, within BACOVA_02461at 224.460 kb on - strandat 224.460 kb on - strandat 224.465 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction b-Mannan borohydrate reduced carob seed 2.5 mg/ml (C)
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221,372 + +0.1
221,372 + -0.4
221,383 + +0.7
221,388 - +1.2
221,399 + +0.3
221,420 - +2.4
221,440 + -1.5
221,441 - +0.6
221,442 + +1.3
221,442 + +0.3
221,443 - BACOVA_02459 0.10 -0.9
221,443 - BACOVA_02459 0.10 +0.4
221,449 + BACOVA_02459 0.11 -0.0
221,505 + BACOVA_02459 0.16 -0.7
221,530 + BACOVA_02459 0.19 -0.7
221,531 - BACOVA_02459 0.19 -0.5
221,546 - BACOVA_02459 0.20 -1.7
221,556 - BACOVA_02459 0.21 +1.0
221,589 - BACOVA_02459 0.25 +1.3
221,589 - BACOVA_02459 0.25 +0.9
221,609 + BACOVA_02459 0.27 -0.0
221,610 - BACOVA_02459 0.27 +2.2
221,610 - BACOVA_02459 0.27 +2.0
221,626 + BACOVA_02459 0.28 -2.1
221,627 - BACOVA_02459 0.29 +0.3
221,627 - BACOVA_02459 0.29 -0.1
221,644 - BACOVA_02459 0.30 +0.9
221,644 - BACOVA_02459 0.30 +0.2
221,644 - BACOVA_02459 0.30 +2.3
221,644 - BACOVA_02459 0.30 +2.3
221,685 - BACOVA_02459 0.34 +2.7
221,715 + BACOVA_02459 0.37 -0.7
221,731 + BACOVA_02459 0.39 -1.0
221,731 + BACOVA_02459 0.39 +0.0
221,740 + BACOVA_02459 0.40 -1.3
221,759 - BACOVA_02459 0.42 -0.3
221,767 - BACOVA_02459 0.43 +2.4
222,814 + BACOVA_02460 0.42 +0.3
222,850 - BACOVA_02460 0.45 +2.9
222,850 - BACOVA_02460 0.45 +0.9
223,039 + BACOVA_02460 0.62 +0.0
223,039 + BACOVA_02460 0.62 -0.0
223,039 + BACOVA_02460 0.62 +0.3
223,040 - BACOVA_02460 0.62 +2.2
223,040 - BACOVA_02460 0.62 +1.3
223,046 - BACOVA_02460 0.62 +3.6
223,051 + BACOVA_02460 0.63 -0.7
223,052 - BACOVA_02460 0.63 +3.6
223,059 + BACOVA_02460 0.63 +1.9
223,065 + BACOVA_02460 0.64 -2.0
223,065 + BACOVA_02460 0.64 -0.5
223,070 + BACOVA_02460 0.64 +0.1
223,118 - BACOVA_02460 0.68 -0.6
223,121 + BACOVA_02460 0.69 -0.7
223,191 - BACOVA_02460 0.75 -2.8
223,226 - BACOVA_02460 0.78 -0.5
223,226 - BACOVA_02460 0.78 -0.5
223,271 + BACOVA_02460 0.82 -1.7
223,282 + BACOVA_02460 0.83 -0.3
223,294 - BACOVA_02460 0.84 +1.2
223,294 - BACOVA_02460 0.84 +0.2
223,294 - BACOVA_02460 0.84 +2.2
223,341 + BACOVA_02460 0.88 +2.3
223,342 - BACOVA_02460 0.88 +4.6
223,448 - -1.3
223,482 - +1.5
223,490 - +2.6
223,490 - +1.4
223,522 - +2.2
223,550 - +1.3
223,550 - +1.4
223,550 - +0.4
223,550 - +1.2
223,557 + +0.7
223,558 - +2.0
223,576 - +2.9
223,592 - BACOVA_02461 0.10 +0.6
223,597 - BACOVA_02461 0.11 +0.5
223,613 - BACOVA_02461 0.12 +1.0
223,616 + BACOVA_02461 0.12 +1.0
223,617 - BACOVA_02461 0.12 +1.7
223,617 - BACOVA_02461 0.12 +1.9
223,617 - BACOVA_02461 0.12 -0.4
223,628 + BACOVA_02461 0.13 -1.9
223,629 - BACOVA_02461 0.14 +1.3
223,629 - BACOVA_02461 0.14 +2.5
223,629 - BACOVA_02461 0.14 -1.4
223,659 - BACOVA_02461 0.16 +2.7
223,659 - BACOVA_02461 0.16 +1.0
223,746 - BACOVA_02461 0.24 +2.8
223,757 - BACOVA_02461 0.25 +1.5
223,757 - BACOVA_02461 0.25 +1.8
223,779 - BACOVA_02461 0.27 +0.4
223,806 + BACOVA_02461 0.30 -0.3
223,807 - BACOVA_02461 0.30 +1.6
223,812 - BACOVA_02461 0.30 -1.0
223,814 - BACOVA_02461 0.31 +1.3
223,908 - BACOVA_02461 0.39 -0.9
223,915 - BACOVA_02461 0.40 -0.0
223,922 + BACOVA_02461 0.41 +0.7
223,923 - BACOVA_02461 0.41 +1.1
223,923 - BACOVA_02461 0.41 +0.8
223,976 - BACOVA_02461 0.46 -1.9
223,995 - BACOVA_02461 0.47 +0.1
224,041 + BACOVA_02461 0.52 +1.3
224,041 + BACOVA_02461 0.52 -0.1
224,081 - BACOVA_02461 0.55 +1.1
224,108 - BACOVA_02461 0.58 -0.0
224,112 - BACOVA_02461 0.58 +1.3
224,150 - BACOVA_02461 0.62 -1.3
224,150 - BACOVA_02461 0.62 -0.1
224,150 - BACOVA_02461 0.62 +2.4
224,193 - BACOVA_02461 0.66 +2.1
224,193 - BACOVA_02461 0.66 +0.4
224,197 - BACOVA_02461 0.66 +0.9
224,231 - BACOVA_02461 0.69 +3.1
224,387 - BACOVA_02461 0.84 +1.3
224,433 - BACOVA_02461 0.88 +2.2
224,460 - +1.0
224,460 - +1.5
224,465 - +2.3

Or see this region's nucleotide sequence