Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02003

Experiment: b-Mannan borohydrate reduced carob seed 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_02002 and BACOVA_02003 are separated by 313 nucleotides BACOVA_02002: BACOVA_02002 - hypothetical protein, at 241,335 to 242,579 _02002 BACOVA_02003: BACOVA_02003 - hypothetical protein, at 242,893 to 243,288 _02003 Position (kb) 242 243 244Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 241.901 kb on + strand, within BACOVA_02002at 241.901 kb on + strand, within BACOVA_02002at 241.901 kb on + strand, within BACOVA_02002at 241.901 kb on + strand, within BACOVA_02002at 241.931 kb on + strand, within BACOVA_02002at 241.936 kb on - strand, within BACOVA_02002at 242.048 kb on + strand, within BACOVA_02002at 242.050 kb on + strand, within BACOVA_02002at 242.054 kb on - strand, within BACOVA_02002at 242.054 kb on - strand, within BACOVA_02002at 242.057 kb on + strand, within BACOVA_02002at 242.064 kb on - strand, within BACOVA_02002at 242.067 kb on + strand, within BACOVA_02002at 242.067 kb on + strand, within BACOVA_02002at 242.068 kb on - strand, within BACOVA_02002at 242.119 kb on - strand, within BACOVA_02002at 242.155 kb on + strand, within BACOVA_02002at 242.239 kb on - strand, within BACOVA_02002at 242.239 kb on - strand, within BACOVA_02002at 242.241 kb on - strand, within BACOVA_02002at 242.311 kb on + strand, within BACOVA_02002at 242.311 kb on + strand, within BACOVA_02002at 242.316 kb on + strand, within BACOVA_02002at 242.347 kb on + strand, within BACOVA_02002at 242.347 kb on + strand, within BACOVA_02002at 242.347 kb on + strand, within BACOVA_02002at 242.347 kb on + strand, within BACOVA_02002at 242.348 kb on - strand, within BACOVA_02002at 242.349 kb on + strand, within BACOVA_02002at 242.349 kb on + strand, within BACOVA_02002at 242.350 kb on - strand, within BACOVA_02002at 242.363 kb on - strand, within BACOVA_02002at 242.434 kb on - strand, within BACOVA_02002at 242.468 kb on + strandat 242.468 kb on + strandat 242.473 kb on + strandat 242.473 kb on + strandat 242.473 kb on + strandat 242.473 kb on + strandat 242.473 kb on + strandat 242.473 kb on + strandat 242.474 kb on - strandat 242.488 kb on - strandat 242.488 kb on - strandat 242.537 kb on - strandat 242.537 kb on - strandat 242.540 kb on + strandat 242.541 kb on - strandat 242.549 kb on + strandat 242.550 kb on - strandat 242.571 kb on - strandat 242.571 kb on - strandat 242.588 kb on + strandat 242.605 kb on + strandat 242.605 kb on + strandat 242.606 kb on - strandat 242.607 kb on + strandat 242.674 kb on + strandat 242.674 kb on + strandat 242.675 kb on - strandat 242.721 kb on - strandat 242.725 kb on + strandat 242.777 kb on + strandat 242.856 kb on - strandat 242.863 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction b-Mannan borohydrate reduced carob seed 2.5 mg/ml (C)
remove
241,901 + BACOVA_02002 0.45 -2.2
241,901 + BACOVA_02002 0.45 -0.9
241,901 + BACOVA_02002 0.45 -1.5
241,901 + BACOVA_02002 0.45 -0.8
241,931 + BACOVA_02002 0.48 -1.2
241,936 - BACOVA_02002 0.48 -2.4
242,048 + BACOVA_02002 0.57 -0.3
242,050 + BACOVA_02002 0.57 -0.7
242,054 - BACOVA_02002 0.58 -0.8
242,054 - BACOVA_02002 0.58 -0.8
242,057 + BACOVA_02002 0.58 -1.8
242,064 - BACOVA_02002 0.59 -2.0
242,067 + BACOVA_02002 0.59 +0.2
242,067 + BACOVA_02002 0.59 -1.1
242,068 - BACOVA_02002 0.59 -3.9
242,119 - BACOVA_02002 0.63 -2.0
242,155 + BACOVA_02002 0.66 -1.0
242,239 - BACOVA_02002 0.73 -3.4
242,239 - BACOVA_02002 0.73 -0.9
242,241 - BACOVA_02002 0.73 +0.5
242,311 + BACOVA_02002 0.78 -0.5
242,311 + BACOVA_02002 0.78 -1.2
242,316 + BACOVA_02002 0.79 +0.0
242,347 + BACOVA_02002 0.81 -0.3
242,347 + BACOVA_02002 0.81 -1.0
242,347 + BACOVA_02002 0.81 -1.6
242,347 + BACOVA_02002 0.81 -1.5
242,348 - BACOVA_02002 0.81 -2.4
242,349 + BACOVA_02002 0.81 -0.9
242,349 + BACOVA_02002 0.81 -1.9
242,350 - BACOVA_02002 0.82 +0.5
242,363 - BACOVA_02002 0.83 -0.0
242,434 - BACOVA_02002 0.88 -0.7
242,468 + -2.2
242,468 + -3.2
242,473 + -0.0
242,473 + -3.2
242,473 + -0.5
242,473 + +0.8
242,473 + -2.1
242,473 + -0.3
242,474 - +0.4
242,488 - +0.3
242,488 - -0.9
242,537 - -0.1
242,537 - -1.6
242,540 + +0.0
242,541 - -1.7
242,549 + -2.7
242,550 - -1.5
242,571 - -0.2
242,571 - -1.0
242,588 + -0.1
242,605 + -1.0
242,605 + +0.4
242,606 - -1.2
242,607 + -0.9
242,674 + -1.6
242,674 + +0.3
242,675 - -0.6
242,721 - -0.4
242,725 + -1.3
242,777 + +0.4
242,856 - +0.8
242,863 - +0.1

Or see this region's nucleotide sequence