Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01169

Experiment: b-Mannan borohydrate reduced carob seed 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01165 and BACOVA_01166 are separated by 157 nucleotidesBACOVA_01166 and BACOVA_01167 overlap by 4 nucleotidesBACOVA_01167 and BACOVA_01169 are separated by 23 nucleotidesBACOVA_01169 and BACOVA_01168 overlap by 26 nucleotidesBACOVA_01168 and BACOVA_01170 are separated by 178 nucleotides BACOVA_01165: BACOVA_01165 - single-stranded-DNA-specific exonuclease RecJ, at 120,885 to 122,651 _01165 BACOVA_01166: BACOVA_01166 - hypothetical protein, at 122,809 to 123,039 _01166 BACOVA_01167: BACOVA_01167 - hypothetical protein, at 123,036 to 123,491 _01167 BACOVA_01169: BACOVA_01169 - hypothetical protein, at 123,515 to 123,739 _01169 BACOVA_01168: BACOVA_01168 - hypothetical protein, at 123,714 to 123,821 _01168 BACOVA_01170: BACOVA_01170 - hypothetical protein, at 124,000 to 124,860 _01170 Position (kb) 123 124Strain fitness (log2 ratio) -2 -1 0 1 2 3at 122.609 kb on - strandat 122.728 kb on + strandat 122.746 kb on + strandat 122.774 kb on + strandat 122.814 kb on + strandat 122.815 kb on - strandat 122.876 kb on + strand, within BACOVA_01166at 122.877 kb on - strand, within BACOVA_01166at 122.877 kb on - strand, within BACOVA_01166at 122.925 kb on - strand, within BACOVA_01166at 122.927 kb on + strand, within BACOVA_01166at 122.953 kb on - strand, within BACOVA_01166at 122.953 kb on - strand, within BACOVA_01166at 122.954 kb on + strand, within BACOVA_01166at 122.954 kb on + strand, within BACOVA_01166at 122.955 kb on - strand, within BACOVA_01166at 122.955 kb on - strand, within BACOVA_01166at 122.974 kb on + strand, within BACOVA_01166at 122.975 kb on - strand, within BACOVA_01166at 122.975 kb on - strand, within BACOVA_01166at 122.981 kb on - strand, within BACOVA_01166at 122.981 kb on - strand, within BACOVA_01166at 123.009 kb on + strand, within BACOVA_01166at 123.009 kb on + strand, within BACOVA_01166at 123.009 kb on + strand, within BACOVA_01166at 123.010 kb on - strand, within BACOVA_01166at 123.024 kb on + strandat 123.052 kb on + strandat 123.082 kb on + strand, within BACOVA_01167at 123.082 kb on + strand, within BACOVA_01167at 123.082 kb on + strand, within BACOVA_01167at 123.087 kb on + strand, within BACOVA_01167at 123.087 kb on + strand, within BACOVA_01167at 123.088 kb on - strand, within BACOVA_01167at 123.088 kb on - strand, within BACOVA_01167at 123.112 kb on - strand, within BACOVA_01167at 123.112 kb on - strand, within BACOVA_01167at 123.154 kb on + strand, within BACOVA_01167at 123.169 kb on + strand, within BACOVA_01167at 123.169 kb on + strand, within BACOVA_01167at 123.192 kb on - strand, within BACOVA_01167at 123.204 kb on + strand, within BACOVA_01167at 123.205 kb on - strand, within BACOVA_01167at 123.207 kb on - strand, within BACOVA_01167at 123.207 kb on - strand, within BACOVA_01167at 123.212 kb on - strand, within BACOVA_01167at 123.212 kb on - strand, within BACOVA_01167at 123.253 kb on - strand, within BACOVA_01167at 123.281 kb on - strand, within BACOVA_01167at 123.281 kb on - strand, within BACOVA_01167at 123.319 kb on - strand, within BACOVA_01167at 123.322 kb on - strand, within BACOVA_01167at 123.468 kb on + strandat 123.505 kb on + strandat 123.505 kb on + strandat 123.508 kb on - strandat 123.508 kb on - strandat 123.516 kb on + strandat 123.536 kb on - strandat 123.563 kb on - strand, within BACOVA_01169at 123.669 kb on + strand, within BACOVA_01169at 123.698 kb on + strand, within BACOVA_01169at 123.699 kb on - strand, within BACOVA_01169at 123.703 kb on + strand, within BACOVA_01169at 123.760 kb on + strand, within BACOVA_01168at 123.761 kb on - strand, within BACOVA_01168at 123.808 kb on + strand, within BACOVA_01168at 123.819 kb on + strandat 123.857 kb on - strandat 123.873 kb on + strandat 123.889 kb on - strandat 123.892 kb on - strandat 123.905 kb on - strandat 123.930 kb on + strandat 123.931 kb on - strandat 123.961 kb on - strandat 123.996 kb on - strandat 124.000 kb on - strandat 124.000 kb on - strandat 124.027 kb on - strandat 124.044 kb on + strandat 124.045 kb on - strandat 124.091 kb on + strand, within BACOVA_01170at 124.091 kb on + strand, within BACOVA_01170at 124.135 kb on + strand, within BACOVA_01170at 124.137 kb on + strand, within BACOVA_01170at 124.137 kb on + strand, within BACOVA_01170at 124.137 kb on + strand, within BACOVA_01170at 124.137 kb on + strand, within BACOVA_01170at 124.142 kb on - strand, within BACOVA_01170at 124.142 kb on - strand, within BACOVA_01170at 124.142 kb on - strand, within BACOVA_01170at 124.142 kb on - strand, within BACOVA_01170at 124.142 kb on - strand, within BACOVA_01170at 124.142 kb on - strand, within BACOVA_01170at 124.183 kb on - strand, within BACOVA_01170at 124.191 kb on - strand, within BACOVA_01170at 124.274 kb on - strand, within BACOVA_01170at 124.275 kb on + strand, within BACOVA_01170at 124.282 kb on - strand, within BACOVA_01170at 124.303 kb on + strand, within BACOVA_01170at 124.304 kb on - strand, within BACOVA_01170at 124.410 kb on + strand, within BACOVA_01170at 124.457 kb on + strand, within BACOVA_01170at 124.458 kb on - strand, within BACOVA_01170at 124.470 kb on + strand, within BACOVA_01170at 124.485 kb on + strand, within BACOVA_01170at 124.490 kb on + strand, within BACOVA_01170at 124.582 kb on - strand, within BACOVA_01170at 124.594 kb on - strand, within BACOVA_01170at 124.599 kb on + strand, within BACOVA_01170at 124.599 kb on + strand, within BACOVA_01170at 124.716 kb on - strand, within BACOVA_01170at 124.738 kb on - strand, within BACOVA_01170

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Per-strain Table

Position Strand Gene LocusTag Fraction b-Mannan borohydrate reduced carob seed 2.5 mg/ml (C)
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122,609 - -0.8
122,728 + -0.2
122,746 + +0.9
122,774 + +0.7
122,814 + +1.0
122,815 - -0.4
122,876 + BACOVA_01166 0.29 -0.7
122,877 - BACOVA_01166 0.29 -0.3
122,877 - BACOVA_01166 0.29 -0.4
122,925 - BACOVA_01166 0.50 -0.3
122,927 + BACOVA_01166 0.51 +0.3
122,953 - BACOVA_01166 0.62 +1.3
122,953 - BACOVA_01166 0.62 -0.0
122,954 + BACOVA_01166 0.63 -0.5
122,954 + BACOVA_01166 0.63 +0.6
122,955 - BACOVA_01166 0.63 +1.3
122,955 - BACOVA_01166 0.63 -1.9
122,974 + BACOVA_01166 0.71 +0.1
122,975 - BACOVA_01166 0.72 -1.0
122,975 - BACOVA_01166 0.72 -0.9
122,981 - BACOVA_01166 0.74 -1.4
122,981 - BACOVA_01166 0.74 -0.3
123,009 + BACOVA_01166 0.87 +2.0
123,009 + BACOVA_01166 0.87 -1.4
123,009 + BACOVA_01166 0.87 +0.4
123,010 - BACOVA_01166 0.87 -1.4
123,024 + +1.6
123,052 + -0.0
123,082 + BACOVA_01167 0.10 -1.0
123,082 + BACOVA_01167 0.10 -0.1
123,082 + BACOVA_01167 0.10 +1.1
123,087 + BACOVA_01167 0.11 -0.2
123,087 + BACOVA_01167 0.11 +0.4
123,088 - BACOVA_01167 0.11 -0.4
123,088 - BACOVA_01167 0.11 -1.7
123,112 - BACOVA_01167 0.17 +0.8
123,112 - BACOVA_01167 0.17 +1.1
123,154 + BACOVA_01167 0.26 -0.1
123,169 + BACOVA_01167 0.29 -1.4
123,169 + BACOVA_01167 0.29 -0.3
123,192 - BACOVA_01167 0.34 -0.5
123,204 + BACOVA_01167 0.37 +0.2
123,205 - BACOVA_01167 0.37 -0.4
123,207 - BACOVA_01167 0.38 -1.9
123,207 - BACOVA_01167 0.38 +1.1
123,212 - BACOVA_01167 0.39 -0.7
123,212 - BACOVA_01167 0.39 -0.3
123,253 - BACOVA_01167 0.48 -0.1
123,281 - BACOVA_01167 0.54 +0.8
123,281 - BACOVA_01167 0.54 -0.7
123,319 - BACOVA_01167 0.62 +0.9
123,322 - BACOVA_01167 0.63 +0.1
123,468 + +0.4
123,505 + -2.0
123,505 + +1.3
123,508 - +0.6
123,508 - -0.5
123,516 + -0.7
123,536 - -1.8
123,563 - BACOVA_01169 0.21 +0.5
123,669 + BACOVA_01169 0.68 -1.2
123,698 + BACOVA_01169 0.81 -0.9
123,699 - BACOVA_01169 0.82 -1.1
123,703 + BACOVA_01169 0.84 -1.4
123,760 + BACOVA_01168 0.43 +2.4
123,761 - BACOVA_01168 0.44 +0.2
123,808 + BACOVA_01168 0.87 -0.6
123,819 + +0.7
123,857 - +1.7
123,873 + +0.3
123,889 - +0.4
123,892 - -1.4
123,905 - -0.6
123,930 + +0.4
123,931 - +0.6
123,961 - -0.6
123,996 - +1.8
124,000 - -1.0
124,000 - +0.4
124,027 - -0.4
124,044 + +1.6
124,045 - -0.4
124,091 + BACOVA_01170 0.11 +0.6
124,091 + BACOVA_01170 0.11 +0.3
124,135 + BACOVA_01170 0.16 +0.7
124,137 + BACOVA_01170 0.16 +1.0
124,137 + BACOVA_01170 0.16 +0.1
124,137 + BACOVA_01170 0.16 -1.0
124,137 + BACOVA_01170 0.16 +0.4
124,142 - BACOVA_01170 0.16 -0.4
124,142 - BACOVA_01170 0.16 -0.1
124,142 - BACOVA_01170 0.16 +2.9
124,142 - BACOVA_01170 0.16 +0.6
124,142 - BACOVA_01170 0.16 +0.3
124,142 - BACOVA_01170 0.16 +0.2
124,183 - BACOVA_01170 0.21 -0.5
124,191 - BACOVA_01170 0.22 +0.8
124,274 - BACOVA_01170 0.32 -0.5
124,275 + BACOVA_01170 0.32 -0.4
124,282 - BACOVA_01170 0.33 +0.6
124,303 + BACOVA_01170 0.35 -1.2
124,304 - BACOVA_01170 0.35 +0.1
124,410 + BACOVA_01170 0.48 +2.0
124,457 + BACOVA_01170 0.53 -0.7
124,458 - BACOVA_01170 0.53 +0.6
124,470 + BACOVA_01170 0.55 -0.4
124,485 + BACOVA_01170 0.56 -0.1
124,490 + BACOVA_01170 0.57 +0.2
124,582 - BACOVA_01170 0.68 +1.0
124,594 - BACOVA_01170 0.69 -0.0
124,599 + BACOVA_01170 0.70 +0.8
124,599 + BACOVA_01170 0.70 +0.8
124,716 - BACOVA_01170 0.83 -0.7
124,738 - BACOVA_01170 0.86 +0.7

Or see this region's nucleotide sequence