Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01187

Experiment: B-glucan from yeast 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01186 and BACOVA_01187 overlap by 28 nucleotidesBACOVA_01187 and BACOVA_01188 overlap by 34 nucleotidesBACOVA_01188 and BACOVA_01189 overlap by 16 nucleotides BACOVA_01186: BACOVA_01186 - Beta-ketoacyl synthase, C-terminal domain protein, at 140,810 to 142,594 _01186 BACOVA_01187: BACOVA_01187 - acyl-CoA thioester hydrolase, YbgC/YbaW family, at 142,567 to 143,040 _01187 BACOVA_01188: BACOVA_01188 - FabA-like domain protein, at 143,007 to 143,456 _01188 BACOVA_01189: BACOVA_01189 - O-methyltransferase, at 143,441 to 144,511 _01189 Position (kb) 142 143 144Strain fitness (log2 ratio) -2 -1 0 1 2 3at 141.618 kb on - strand, within BACOVA_01186at 141.618 kb on - strand, within BACOVA_01186at 141.626 kb on + strand, within BACOVA_01186at 141.653 kb on + strand, within BACOVA_01186at 141.701 kb on + strand, within BACOVA_01186at 141.702 kb on - strand, within BACOVA_01186at 141.716 kb on + strand, within BACOVA_01186at 141.716 kb on + strand, within BACOVA_01186at 141.752 kb on - strand, within BACOVA_01186at 141.772 kb on + strand, within BACOVA_01186at 141.779 kb on - strand, within BACOVA_01186at 141.865 kb on + strand, within BACOVA_01186at 141.865 kb on + strand, within BACOVA_01186at 141.865 kb on + strand, within BACOVA_01186at 141.865 kb on + strand, within BACOVA_01186at 141.865 kb on + strand, within BACOVA_01186at 141.866 kb on - strand, within BACOVA_01186at 141.905 kb on - strand, within BACOVA_01186at 141.908 kb on - strand, within BACOVA_01186at 141.908 kb on - strand, within BACOVA_01186at 141.981 kb on - strand, within BACOVA_01186at 141.982 kb on + strand, within BACOVA_01186at 141.987 kb on + strand, within BACOVA_01186at 141.987 kb on + strand, within BACOVA_01186at 141.987 kb on + strand, within BACOVA_01186at 141.987 kb on + strand, within BACOVA_01186at 141.988 kb on - strand, within BACOVA_01186at 142.040 kb on - strand, within BACOVA_01186at 142.087 kb on - strand, within BACOVA_01186at 142.087 kb on - strand, within BACOVA_01186at 142.100 kb on + strand, within BACOVA_01186at 142.121 kb on + strand, within BACOVA_01186at 142.142 kb on - strand, within BACOVA_01186at 142.163 kb on + strand, within BACOVA_01186at 142.273 kb on + strand, within BACOVA_01186at 142.274 kb on - strand, within BACOVA_01186at 142.278 kb on - strand, within BACOVA_01186at 142.278 kb on - strand, within BACOVA_01186at 142.346 kb on + strand, within BACOVA_01186at 142.353 kb on - strand, within BACOVA_01186at 142.371 kb on + strand, within BACOVA_01186at 142.488 kb on + strandat 142.492 kb on + strandat 142.492 kb on + strandat 142.493 kb on - strandat 142.538 kb on - strandat 142.547 kb on - strandat 142.561 kb on - strandat 142.561 kb on - strandat 142.562 kb on + strandat 142.562 kb on + strandat 142.563 kb on - strandat 142.564 kb on + strandat 142.565 kb on - strandat 142.568 kb on + strandat 142.617 kb on + strand, within BACOVA_01187at 142.618 kb on - strand, within BACOVA_01187at 142.618 kb on - strand, within BACOVA_01187at 142.618 kb on - strand, within BACOVA_01187at 142.618 kb on - strand, within BACOVA_01187at 142.654 kb on + strand, within BACOVA_01187at 142.654 kb on + strand, within BACOVA_01187at 142.654 kb on + strand, within BACOVA_01187at 142.655 kb on - strand, within BACOVA_01187at 142.672 kb on + strand, within BACOVA_01187at 142.672 kb on + strand, within BACOVA_01187at 142.673 kb on - strand, within BACOVA_01187at 142.673 kb on - strand, within BACOVA_01187at 142.675 kb on + strand, within BACOVA_01187at 142.675 kb on + strand, within BACOVA_01187at 142.675 kb on + strand, within BACOVA_01187at 142.676 kb on - strand, within BACOVA_01187at 142.676 kb on - strand, within BACOVA_01187at 142.677 kb on + strand, within BACOVA_01187at 142.677 kb on + strand, within BACOVA_01187at 142.677 kb on + strand, within BACOVA_01187at 142.678 kb on - strand, within BACOVA_01187at 142.702 kb on - strand, within BACOVA_01187at 142.740 kb on + strand, within BACOVA_01187at 142.740 kb on + strand, within BACOVA_01187at 142.740 kb on + strand, within BACOVA_01187at 142.740 kb on + strand, within BACOVA_01187at 142.741 kb on - strand, within BACOVA_01187at 142.741 kb on - strand, within BACOVA_01187at 142.741 kb on - strand, within BACOVA_01187at 142.778 kb on - strand, within BACOVA_01187at 142.802 kb on - strand, within BACOVA_01187at 142.813 kb on - strand, within BACOVA_01187at 142.820 kb on + strand, within BACOVA_01187at 142.823 kb on + strand, within BACOVA_01187at 142.835 kb on + strand, within BACOVA_01187at 142.840 kb on - strand, within BACOVA_01187at 142.845 kb on + strand, within BACOVA_01187at 142.845 kb on + strand, within BACOVA_01187at 142.846 kb on - strand, within BACOVA_01187at 142.846 kb on - strand, within BACOVA_01187at 142.848 kb on - strand, within BACOVA_01187at 142.860 kb on - strand, within BACOVA_01187at 142.904 kb on + strand, within BACOVA_01187at 142.905 kb on - strand, within BACOVA_01187at 142.918 kb on + strand, within BACOVA_01187at 143.021 kb on + strandat 143.087 kb on + strand, within BACOVA_01188at 143.098 kb on - strand, within BACOVA_01188at 143.107 kb on - strand, within BACOVA_01188at 143.128 kb on - strand, within BACOVA_01188at 143.128 kb on - strand, within BACOVA_01188at 143.196 kb on + strand, within BACOVA_01188at 143.196 kb on + strand, within BACOVA_01188at 143.217 kb on - strand, within BACOVA_01188at 143.218 kb on + strand, within BACOVA_01188at 143.218 kb on + strand, within BACOVA_01188at 143.264 kb on + strand, within BACOVA_01188at 143.303 kb on + strand, within BACOVA_01188at 143.332 kb on + strand, within BACOVA_01188at 143.421 kb on + strandat 143.422 kb on - strandat 143.422 kb on - strandat 143.426 kb on + strandat 143.426 kb on + strandat 143.427 kb on - strandat 143.459 kb on + strandat 143.460 kb on - strandat 143.460 kb on - strandat 143.460 kb on - strandat 143.492 kb on + strandat 143.563 kb on + strand, within BACOVA_01189at 143.563 kb on + strand, within BACOVA_01189at 143.587 kb on - strand, within BACOVA_01189at 143.610 kb on + strand, within BACOVA_01189at 143.656 kb on + strand, within BACOVA_01189at 143.658 kb on + strand, within BACOVA_01189at 143.658 kb on + strand, within BACOVA_01189at 143.658 kb on + strand, within BACOVA_01189at 143.659 kb on - strand, within BACOVA_01189at 143.659 kb on - strand, within BACOVA_01189at 143.702 kb on + strand, within BACOVA_01189at 143.818 kb on + strand, within BACOVA_01189at 143.885 kb on - strand, within BACOVA_01189at 143.887 kb on + strand, within BACOVA_01189at 143.887 kb on + strand, within BACOVA_01189at 143.887 kb on + strand, within BACOVA_01189at 143.910 kb on + strand, within BACOVA_01189at 143.911 kb on - strand, within BACOVA_01189at 143.915 kb on + strand, within BACOVA_01189at 143.915 kb on + strand, within BACOVA_01189at 144.024 kb on + strand, within BACOVA_01189

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Per-strain Table

Position Strand Gene LocusTag Fraction B-glucan from yeast 2.5 mg/ml (C)
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141,618 - BACOVA_01186 0.45 +0.3
141,618 - BACOVA_01186 0.45 -0.8
141,626 + BACOVA_01186 0.46 -0.4
141,653 + BACOVA_01186 0.47 -1.5
141,701 + BACOVA_01186 0.50 +0.4
141,702 - BACOVA_01186 0.50 +0.4
141,716 + BACOVA_01186 0.51 +0.9
141,716 + BACOVA_01186 0.51 +0.3
141,752 - BACOVA_01186 0.53 -0.2
141,772 + BACOVA_01186 0.54 -0.3
141,779 - BACOVA_01186 0.54 +0.5
141,865 + BACOVA_01186 0.59 -0.1
141,865 + BACOVA_01186 0.59 +1.3
141,865 + BACOVA_01186 0.59 -0.8
141,865 + BACOVA_01186 0.59 +0.8
141,865 + BACOVA_01186 0.59 -0.4
141,866 - BACOVA_01186 0.59 +0.6
141,905 - BACOVA_01186 0.61 -0.1
141,908 - BACOVA_01186 0.62 +1.7
141,908 - BACOVA_01186 0.62 -1.7
141,981 - BACOVA_01186 0.66 +0.1
141,982 + BACOVA_01186 0.66 -0.1
141,987 + BACOVA_01186 0.66 +0.6
141,987 + BACOVA_01186 0.66 +0.3
141,987 + BACOVA_01186 0.66 +2.3
141,987 + BACOVA_01186 0.66 +2.9
141,988 - BACOVA_01186 0.66 -0.7
142,040 - BACOVA_01186 0.69 +0.2
142,087 - BACOVA_01186 0.72 +0.6
142,087 - BACOVA_01186 0.72 +0.2
142,100 + BACOVA_01186 0.72 -0.4
142,121 + BACOVA_01186 0.73 +1.6
142,142 - BACOVA_01186 0.75 +1.9
142,163 + BACOVA_01186 0.76 -1.2
142,273 + BACOVA_01186 0.82 -1.5
142,274 - BACOVA_01186 0.82 -0.5
142,278 - BACOVA_01186 0.82 +1.2
142,278 - BACOVA_01186 0.82 -0.3
142,346 + BACOVA_01186 0.86 -1.0
142,353 - BACOVA_01186 0.86 -0.5
142,371 + BACOVA_01186 0.87 -1.6
142,488 + +0.2
142,492 + +0.3
142,492 + +0.1
142,493 - +0.3
142,538 - +1.1
142,547 - +0.0
142,561 - -0.8
142,561 - -0.6
142,562 + +0.3
142,562 + -0.1
142,563 - +0.0
142,564 + +1.3
142,565 - -1.9
142,568 + +0.3
142,617 + BACOVA_01187 0.11 -0.3
142,618 - BACOVA_01187 0.11 -0.7
142,618 - BACOVA_01187 0.11 -0.1
142,618 - BACOVA_01187 0.11 +0.4
142,618 - BACOVA_01187 0.11 +0.4
142,654 + BACOVA_01187 0.18 +0.0
142,654 + BACOVA_01187 0.18 -0.6
142,654 + BACOVA_01187 0.18 +1.2
142,655 - BACOVA_01187 0.19 -0.5
142,672 + BACOVA_01187 0.22 +1.9
142,672 + BACOVA_01187 0.22 -0.0
142,673 - BACOVA_01187 0.22 +0.9
142,673 - BACOVA_01187 0.22 +0.1
142,675 + BACOVA_01187 0.23 -1.0
142,675 + BACOVA_01187 0.23 -0.0
142,675 + BACOVA_01187 0.23 +0.5
142,676 - BACOVA_01187 0.23 -1.6
142,676 - BACOVA_01187 0.23 -0.5
142,677 + BACOVA_01187 0.23 +0.1
142,677 + BACOVA_01187 0.23 -0.2
142,677 + BACOVA_01187 0.23 +0.9
142,678 - BACOVA_01187 0.23 +0.9
142,702 - BACOVA_01187 0.28 -0.2
142,740 + BACOVA_01187 0.36 +0.4
142,740 + BACOVA_01187 0.36 +0.2
142,740 + BACOVA_01187 0.36 -1.9
142,740 + BACOVA_01187 0.36 +1.0
142,741 - BACOVA_01187 0.37 +0.3
142,741 - BACOVA_01187 0.37 +0.2
142,741 - BACOVA_01187 0.37 +1.7
142,778 - BACOVA_01187 0.45 +0.8
142,802 - BACOVA_01187 0.50 +1.3
142,813 - BACOVA_01187 0.52 -2.3
142,820 + BACOVA_01187 0.53 -0.6
142,823 + BACOVA_01187 0.54 +1.2
142,835 + BACOVA_01187 0.57 +0.1
142,840 - BACOVA_01187 0.58 -0.3
142,845 + BACOVA_01187 0.59 +0.3
142,845 + BACOVA_01187 0.59 +0.8
142,846 - BACOVA_01187 0.59 +1.2
142,846 - BACOVA_01187 0.59 +0.5
142,848 - BACOVA_01187 0.59 +1.3
142,860 - BACOVA_01187 0.62 -0.2
142,904 + BACOVA_01187 0.71 -0.3
142,905 - BACOVA_01187 0.71 +1.0
142,918 + BACOVA_01187 0.74 -0.1
143,021 + -0.8
143,087 + BACOVA_01188 0.18 +0.7
143,098 - BACOVA_01188 0.20 +0.3
143,107 - BACOVA_01188 0.22 -1.3
143,128 - BACOVA_01188 0.27 -0.4
143,128 - BACOVA_01188 0.27 -1.1
143,196 + BACOVA_01188 0.42 -0.5
143,196 + BACOVA_01188 0.42 -0.4
143,217 - BACOVA_01188 0.47 +0.7
143,218 + BACOVA_01188 0.47 -1.0
143,218 + BACOVA_01188 0.47 -0.6
143,264 + BACOVA_01188 0.57 -1.4
143,303 + BACOVA_01188 0.66 +1.5
143,332 + BACOVA_01188 0.72 +0.4
143,421 + -0.7
143,422 - -0.7
143,422 - +0.3
143,426 + +0.7
143,426 + -1.3
143,427 - +0.7
143,459 + +1.5
143,460 - -1.4
143,460 - -0.2
143,460 - +1.0
143,492 + +0.9
143,563 + BACOVA_01189 0.11 +1.7
143,563 + BACOVA_01189 0.11 +1.1
143,587 - BACOVA_01189 0.14 -1.3
143,610 + BACOVA_01189 0.16 +0.2
143,656 + BACOVA_01189 0.20 +0.3
143,658 + BACOVA_01189 0.20 -0.8
143,658 + BACOVA_01189 0.20 -0.1
143,658 + BACOVA_01189 0.20 -1.2
143,659 - BACOVA_01189 0.20 +0.2
143,659 - BACOVA_01189 0.20 -0.4
143,702 + BACOVA_01189 0.24 -0.9
143,818 + BACOVA_01189 0.35 +0.8
143,885 - BACOVA_01189 0.41 +1.7
143,887 + BACOVA_01189 0.42 -0.4
143,887 + BACOVA_01189 0.42 -1.6
143,887 + BACOVA_01189 0.42 +0.0
143,910 + BACOVA_01189 0.44 +0.5
143,911 - BACOVA_01189 0.44 +1.3
143,915 + BACOVA_01189 0.44 +0.1
143,915 + BACOVA_01189 0.44 +0.6
144,024 + BACOVA_01189 0.54 +0.9

Or see this region's nucleotide sequence