Experiment: Mucin from porcine stomach type III 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05220 and BACOVA_05221 are separated by 40 nucleotides BACOVA_05221 and BACOVA_05222 are separated by 59 nucleotides BACOVA_05222 and BACOVA_05223 are separated by 89 nucleotides
BACOVA_05220: BACOVA_05220 - amino acid/peptide transporter, at 719,503 to 721,047
_05220
BACOVA_05221: BACOVA_05221 - hypoxanthine phosphoribosyltransferase, at 721,088 to 721,624
_05221
BACOVA_05222: BACOVA_05222 - adenylate kinase, at 721,684 to 722,253
_05222
BACOVA_05223: BACOVA_05223 - Obg family GTPase CgtA, at 722,343 to 723,509
_05223
Position (kb) 721
722
723 Strain fitness (log2 ratio) -2
-1
0
1
2 at 720.736 kb on + strand, within BACOVA_05220 at 720.742 kb on - strand, within BACOVA_05220 at 720.747 kb on + strand, within BACOVA_05220 at 720.747 kb on + strand, within BACOVA_05220 at 720.748 kb on - strand, within BACOVA_05220 at 720.791 kb on + strand, within BACOVA_05220 at 720.841 kb on + strand, within BACOVA_05220 at 720.939 kb on + strand at 720.940 kb on - strand at 720.946 kb on + strand at 720.946 kb on + strand at 720.946 kb on + strand at 720.947 kb on - strand at 720.963 kb on - strand at 721.045 kb on + strand at 721.622 kb on + strand at 721.651 kb on + strand at 721.651 kb on + strand at 721.670 kb on + strand at 722.257 kb on + strand at 722.257 kb on + strand at 722.262 kb on + strand at 722.301 kb on + strand at 722.310 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III 2.5 mg/ml (C) remove 720,736 + BACOVA_05220 0.80 -1.0 720,742 - BACOVA_05220 0.80 -0.8 720,747 + BACOVA_05220 0.81 +1.4 720,747 + BACOVA_05220 0.81 -0.2 720,748 - BACOVA_05220 0.81 -0.0 720,791 + BACOVA_05220 0.83 -1.8 720,841 + BACOVA_05220 0.87 -0.0 720,939 + -1.0 720,940 - -0.1 720,946 + +2.0 720,946 + +0.2 720,946 + +1.0 720,947 - +0.5 720,963 - -2.3 721,045 + -0.6 721,622 + +1.4 721,651 + -0.7 721,651 + +0.4 721,670 + +1.5 722,257 + -0.4 722,257 + -0.1 722,262 + +2.0 722,301 + +1.2 722,310 + +0.2
Or see this region's nucleotide sequence