Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05218

Experiment: Mucin from porcine stomach type III 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05215 and BACOVA_05216 are separated by 251 nucleotidesBACOVA_05216 and BACOVA_05217 are separated by 239 nucleotidesBACOVA_05217 and BACOVA_05218 are separated by 32 nucleotidesBACOVA_05218 and BACOVA_05219 are separated by 102 nucleotidesBACOVA_05219 and BACOVA_05220 are separated by 193 nucleotides BACOVA_05215: BACOVA_05215 - YjeF domain protein, at 716,511 to 718,022 _05215 BACOVA_05216: BACOVA_05216 - hypothetical protein, at 718,274 to 718,414 _05216 BACOVA_05217: BACOVA_05217 - hypothetical protein, at 718,654 to 718,812 _05217 BACOVA_05218: BACOVA_05218 - hypothetical protein, at 718,845 to 718,982 _05218 BACOVA_05219: BACOVA_05219 - hypothetical protein, at 719,085 to 719,309 _05219 BACOVA_05220: BACOVA_05220 - amino acid/peptide transporter, at 719,503 to 721,047 _05220 Position (kb) 718 719Strain fitness (log2 ratio) -2 -1 0 1 2 3at 717.872 kb on + strandat 718.056 kb on + strandat 718.056 kb on + strandat 718.057 kb on - strandat 718.116 kb on - strandat 718.126 kb on + strandat 718.127 kb on - strandat 718.127 kb on - strandat 718.166 kb on + strandat 718.169 kb on + strandat 718.169 kb on + strandat 718.176 kb on + strandat 718.181 kb on + strandat 718.198 kb on - strandat 718.224 kb on + strandat 718.225 kb on - strandat 718.311 kb on + strand, within BACOVA_05216at 718.350 kb on + strand, within BACOVA_05216at 718.395 kb on + strand, within BACOVA_05216at 718.483 kb on + strandat 718.483 kb on + strandat 718.541 kb on + strandat 718.543 kb on + strandat 718.543 kb on + strandat 718.544 kb on - strandat 718.544 kb on - strandat 718.564 kb on + strandat 718.600 kb on + strandat 718.600 kb on + strandat 718.636 kb on - strandat 718.645 kb on + strandat 718.646 kb on - strandat 718.678 kb on + strand, within BACOVA_05217at 718.679 kb on - strand, within BACOVA_05217at 718.680 kb on + strand, within BACOVA_05217at 718.682 kb on + strand, within BACOVA_05217at 718.682 kb on + strand, within BACOVA_05217at 718.683 kb on - strand, within BACOVA_05217at 718.683 kb on - strand, within BACOVA_05217at 718.692 kb on + strand, within BACOVA_05217at 718.693 kb on - strand, within BACOVA_05217at 718.718 kb on - strand, within BACOVA_05217at 718.722 kb on + strand, within BACOVA_05217at 718.802 kb on + strandat 718.803 kb on - strandat 718.803 kb on - strandat 718.803 kb on - strandat 718.808 kb on - strandat 718.836 kb on + strandat 718.907 kb on - strand, within BACOVA_05218at 718.953 kb on - strand, within BACOVA_05218at 718.990 kb on - strandat 719.002 kb on - strandat 719.002 kb on - strandat 719.005 kb on + strandat 719.005 kb on + strandat 719.005 kb on + strandat 719.006 kb on - strandat 719.006 kb on - strandat 719.006 kb on - strandat 719.044 kb on + strandat 719.045 kb on - strandat 719.051 kb on + strandat 719.067 kb on + strandat 719.068 kb on - strandat 719.125 kb on + strand, within BACOVA_05219at 719.125 kb on + strand, within BACOVA_05219at 719.183 kb on - strand, within BACOVA_05219at 719.315 kb on + strandat 719.316 kb on - strandat 719.330 kb on + strandat 719.330 kb on + strandat 719.331 kb on - strandat 719.425 kb on - strandat 719.425 kb on - strandat 719.449 kb on + strandat 719.450 kb on - strandat 719.497 kb on - strandat 719.537 kb on - strandat 719.579 kb on - strandat 719.584 kb on - strandat 719.621 kb on + strandat 719.665 kb on - strand, within BACOVA_05220at 719.677 kb on + strand, within BACOVA_05220at 719.712 kb on + strand, within BACOVA_05220at 719.785 kb on - strand, within BACOVA_05220at 719.805 kb on + strand, within BACOVA_05220at 719.833 kb on + strand, within BACOVA_05220at 719.941 kb on + strand, within BACOVA_05220at 719.941 kb on + strand, within BACOVA_05220at 719.941 kb on + strand, within BACOVA_05220at 719.941 kb on + strand, within BACOVA_05220at 719.942 kb on - strand, within BACOVA_05220at 719.969 kb on + strand, within BACOVA_05220

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Per-strain Table

Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III 2.5 mg/ml (C)
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717,872 + -1.0
718,056 + +0.3
718,056 + -0.3
718,057 - -0.6
718,116 - +0.1
718,126 + +0.4
718,127 - +0.5
718,127 - -0.6
718,166 + -0.1
718,169 + +1.0
718,169 + +1.1
718,176 + +0.6
718,181 + +0.2
718,198 - -1.2
718,224 + +1.7
718,225 - +0.3
718,311 + BACOVA_05216 0.26 +1.1
718,350 + BACOVA_05216 0.54 +0.1
718,395 + BACOVA_05216 0.86 +0.7
718,483 + -0.2
718,483 + -0.0
718,541 + -0.6
718,543 + +0.3
718,543 + +0.5
718,544 - +0.0
718,544 - -2.7
718,564 + +0.8
718,600 + +0.6
718,600 + -1.2
718,636 - +1.0
718,645 + +0.2
718,646 - +1.2
718,678 + BACOVA_05217 0.15 +0.3
718,679 - BACOVA_05217 0.16 +0.3
718,680 + BACOVA_05217 0.16 +0.2
718,682 + BACOVA_05217 0.18 +0.3
718,682 + BACOVA_05217 0.18 +2.9
718,683 - BACOVA_05217 0.18 +0.8
718,683 - BACOVA_05217 0.18 +1.0
718,692 + BACOVA_05217 0.24 -1.3
718,693 - BACOVA_05217 0.25 +0.8
718,718 - BACOVA_05217 0.40 -0.2
718,722 + BACOVA_05217 0.43 -1.3
718,802 + -0.0
718,803 - +0.1
718,803 - -0.7
718,803 - +0.3
718,808 - +0.4
718,836 + +2.3
718,907 - BACOVA_05218 0.45 +0.6
718,953 - BACOVA_05218 0.78 -1.6
718,990 - +1.0
719,002 - +0.6
719,002 - -0.9
719,005 + -0.4
719,005 + +0.2
719,005 + -1.4
719,006 - -0.1
719,006 - -0.0
719,006 - -2.2
719,044 + -1.3
719,045 - -0.8
719,051 + -0.6
719,067 + +0.4
719,068 - -0.7
719,125 + BACOVA_05219 0.18 -0.6
719,125 + BACOVA_05219 0.18 +1.8
719,183 - BACOVA_05219 0.44 +0.8
719,315 + +0.4
719,316 - -1.0
719,330 + -1.6
719,330 + +0.5
719,331 - +1.3
719,425 - -0.8
719,425 - -0.1
719,449 + +1.4
719,450 - -0.2
719,497 - -1.0
719,537 - +0.2
719,579 - +1.3
719,584 - -0.4
719,621 + +1.0
719,665 - BACOVA_05220 0.10 +1.0
719,677 + BACOVA_05220 0.11 -0.3
719,712 + BACOVA_05220 0.14 +1.0
719,785 - BACOVA_05220 0.18 -0.6
719,805 + BACOVA_05220 0.20 -0.6
719,833 + BACOVA_05220 0.21 -0.0
719,941 + BACOVA_05220 0.28 +0.6
719,941 + BACOVA_05220 0.28 +0.2
719,941 + BACOVA_05220 0.28 +1.1
719,941 + BACOVA_05220 0.28 -0.3
719,942 - BACOVA_05220 0.28 +0.1
719,969 + BACOVA_05220 0.30 -0.0

Or see this region's nucleotide sequence