Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05128

Experiment: Mucin from porcine stomach type III 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05127 and BACOVA_05128 are separated by 28 nucleotidesBACOVA_05128 and BACOVA_05129 are separated by 20 nucleotides BACOVA_05127: BACOVA_05127 - hypothetical protein, at 602,192 to 603,457 _05127 BACOVA_05128: BACOVA_05128 - ABC transporter, ATP-binding protein, at 603,486 to 604,130 _05128 BACOVA_05129: BACOVA_05129 - hypothetical protein, at 604,151 to 605,728 _05129 Position (kb) 603 604 605Strain fitness (log2 ratio) -2 -1 0 1 2at 602.523 kb on - strand, within BACOVA_05127at 602.523 kb on - strand, within BACOVA_05127at 602.526 kb on + strand, within BACOVA_05127at 602.527 kb on - strand, within BACOVA_05127at 602.545 kb on + strand, within BACOVA_05127at 602.545 kb on + strand, within BACOVA_05127at 602.545 kb on + strand, within BACOVA_05127at 602.549 kb on + strand, within BACOVA_05127at 602.564 kb on + strand, within BACOVA_05127at 602.569 kb on + strand, within BACOVA_05127at 602.569 kb on + strand, within BACOVA_05127at 602.570 kb on - strand, within BACOVA_05127at 602.593 kb on - strand, within BACOVA_05127at 602.618 kb on - strand, within BACOVA_05127at 602.814 kb on + strand, within BACOVA_05127at 602.845 kb on + strand, within BACOVA_05127at 602.846 kb on - strand, within BACOVA_05127at 602.848 kb on + strand, within BACOVA_05127at 602.934 kb on + strand, within BACOVA_05127at 602.957 kb on + strand, within BACOVA_05127at 602.962 kb on + strand, within BACOVA_05127at 602.962 kb on + strand, within BACOVA_05127at 602.962 kb on + strand, within BACOVA_05127at 602.962 kb on + strand, within BACOVA_05127at 602.962 kb on + strand, within BACOVA_05127at 602.962 kb on + strand, within BACOVA_05127at 602.962 kb on + strand, within BACOVA_05127at 602.963 kb on - strand, within BACOVA_05127at 602.963 kb on - strand, within BACOVA_05127at 603.037 kb on + strand, within BACOVA_05127at 603.116 kb on + strand, within BACOVA_05127at 603.172 kb on + strand, within BACOVA_05127at 603.172 kb on + strand, within BACOVA_05127at 603.173 kb on - strand, within BACOVA_05127at 603.176 kb on - strand, within BACOVA_05127at 603.176 kb on - strand, within BACOVA_05127at 603.218 kb on - strand, within BACOVA_05127at 603.221 kb on + strand, within BACOVA_05127at 603.222 kb on - strand, within BACOVA_05127at 603.222 kb on - strand, within BACOVA_05127at 603.291 kb on - strand, within BACOVA_05127at 603.295 kb on + strand, within BACOVA_05127at 603.296 kb on - strand, within BACOVA_05127at 603.303 kb on - strand, within BACOVA_05127at 603.320 kb on + strand, within BACOVA_05127at 603.361 kb on + strandat 603.362 kb on - strandat 603.458 kb on + strandat 603.458 kb on + strandat 603.459 kb on - strandat 603.459 kb on - strandat 603.473 kb on - strandat 603.484 kb on + strandat 603.484 kb on + strandat 603.485 kb on - strandat 603.485 kb on - strandat 603.501 kb on - strandat 603.501 kb on - strandat 603.509 kb on - strandat 603.605 kb on + strand, within BACOVA_05128at 603.763 kb on - strand, within BACOVA_05128at 603.797 kb on + strand, within BACOVA_05128at 603.827 kb on + strand, within BACOVA_05128at 603.847 kb on - strand, within BACOVA_05128at 603.868 kb on - strand, within BACOVA_05128at 603.907 kb on + strand, within BACOVA_05128at 603.967 kb on + strand, within BACOVA_05128at 603.967 kb on + strand, within BACOVA_05128at 603.968 kb on - strand, within BACOVA_05128at 603.971 kb on + strand, within BACOVA_05128at 603.972 kb on - strand, within BACOVA_05128at 603.972 kb on - strand, within BACOVA_05128at 603.973 kb on + strand, within BACOVA_05128at 603.974 kb on - strand, within BACOVA_05128at 604.013 kb on - strand, within BACOVA_05128at 604.021 kb on + strand, within BACOVA_05128at 604.022 kb on - strand, within BACOVA_05128at 604.022 kb on - strand, within BACOVA_05128at 604.022 kb on - strand, within BACOVA_05128at 604.122 kb on - strandat 604.122 kb on - strandat 604.124 kb on + strandat 604.124 kb on + strandat 604.125 kb on - strandat 604.141 kb on + strandat 604.143 kb on + strandat 604.149 kb on + strandat 604.152 kb on + strandat 604.152 kb on + strandat 604.153 kb on - strandat 604.203 kb on - strandat 604.203 kb on - strandat 604.291 kb on + strandat 604.292 kb on - strandat 604.293 kb on + strandat 604.293 kb on + strandat 604.300 kb on + strandat 604.300 kb on + strandat 604.375 kb on + strand, within BACOVA_05129at 604.376 kb on - strand, within BACOVA_05129at 604.376 kb on - strand, within BACOVA_05129at 604.380 kb on - strand, within BACOVA_05129at 604.408 kb on - strand, within BACOVA_05129at 604.461 kb on - strand, within BACOVA_05129at 604.480 kb on - strand, within BACOVA_05129at 604.510 kb on + strand, within BACOVA_05129at 604.511 kb on - strand, within BACOVA_05129at 604.511 kb on - strand, within BACOVA_05129at 604.531 kb on - strand, within BACOVA_05129at 604.531 kb on - strand, within BACOVA_05129at 604.531 kb on - strand, within BACOVA_05129at 604.537 kb on - strand, within BACOVA_05129at 604.537 kb on - strand, within BACOVA_05129at 604.537 kb on - strand, within BACOVA_05129at 604.603 kb on - strand, within BACOVA_05129at 604.641 kb on + strand, within BACOVA_05129at 604.642 kb on - strand, within BACOVA_05129at 604.674 kb on - strand, within BACOVA_05129at 604.728 kb on - strand, within BACOVA_05129at 604.728 kb on - strand, within BACOVA_05129at 604.741 kb on + strand, within BACOVA_05129at 604.748 kb on - strand, within BACOVA_05129at 604.751 kb on + strand, within BACOVA_05129at 604.792 kb on - strand, within BACOVA_05129at 604.848 kb on + strand, within BACOVA_05129at 604.852 kb on + strand, within BACOVA_05129at 604.861 kb on + strand, within BACOVA_05129at 604.962 kb on - strand, within BACOVA_05129at 604.979 kb on + strand, within BACOVA_05129at 604.980 kb on - strand, within BACOVA_05129at 605.040 kb on + strand, within BACOVA_05129at 605.077 kb on + strand, within BACOVA_05129at 605.077 kb on + strand, within BACOVA_05129at 605.078 kb on - strand, within BACOVA_05129at 605.129 kb on - strand, within BACOVA_05129

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Per-strain Table

Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III 2.5 mg/ml (C)
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602,523 - BACOVA_05127 0.26 +0.3
602,523 - BACOVA_05127 0.26 -0.5
602,526 + BACOVA_05127 0.26 +0.3
602,527 - BACOVA_05127 0.26 +0.6
602,545 + BACOVA_05127 0.28 -0.4
602,545 + BACOVA_05127 0.28 +0.4
602,545 + BACOVA_05127 0.28 +0.7
602,549 + BACOVA_05127 0.28 -1.0
602,564 + BACOVA_05127 0.29 -0.3
602,569 + BACOVA_05127 0.30 +1.0
602,569 + BACOVA_05127 0.30 -0.4
602,570 - BACOVA_05127 0.30 -1.3
602,593 - BACOVA_05127 0.32 -2.2
602,618 - BACOVA_05127 0.34 +0.7
602,814 + BACOVA_05127 0.49 -2.0
602,845 + BACOVA_05127 0.52 -1.2
602,846 - BACOVA_05127 0.52 -0.7
602,848 + BACOVA_05127 0.52 +0.3
602,934 + BACOVA_05127 0.59 +0.3
602,957 + BACOVA_05127 0.60 +1.0
602,962 + BACOVA_05127 0.61 -0.7
602,962 + BACOVA_05127 0.61 -2.7
602,962 + BACOVA_05127 0.61 +0.7
602,962 + BACOVA_05127 0.61 +0.6
602,962 + BACOVA_05127 0.61 +0.5
602,962 + BACOVA_05127 0.61 -0.4
602,962 + BACOVA_05127 0.61 -0.7
602,963 - BACOVA_05127 0.61 -1.8
602,963 - BACOVA_05127 0.61 +0.1
603,037 + BACOVA_05127 0.67 -0.0
603,116 + BACOVA_05127 0.73 -0.2
603,172 + BACOVA_05127 0.77 -0.8
603,172 + BACOVA_05127 0.77 -0.0
603,173 - BACOVA_05127 0.77 +1.8
603,176 - BACOVA_05127 0.78 -0.3
603,176 - BACOVA_05127 0.78 -0.0
603,218 - BACOVA_05127 0.81 -1.3
603,221 + BACOVA_05127 0.81 +0.9
603,222 - BACOVA_05127 0.81 -0.0
603,222 - BACOVA_05127 0.81 +0.4
603,291 - BACOVA_05127 0.87 -0.4
603,295 + BACOVA_05127 0.87 -0.8
603,296 - BACOVA_05127 0.87 -0.4
603,303 - BACOVA_05127 0.88 +0.8
603,320 + BACOVA_05127 0.89 +1.0
603,361 + -0.4
603,362 - +0.6
603,458 + +0.2
603,458 + -0.8
603,459 - +0.2
603,459 - -0.6
603,473 - +1.0
603,484 + -0.3
603,484 + -0.0
603,485 - -0.2
603,485 - -1.3
603,501 - +0.7
603,501 - -1.6
603,509 - +0.5
603,605 + BACOVA_05128 0.18 +0.7
603,763 - BACOVA_05128 0.43 -0.3
603,797 + BACOVA_05128 0.48 +0.8
603,827 + BACOVA_05128 0.53 +0.1
603,847 - BACOVA_05128 0.56 +0.4
603,868 - BACOVA_05128 0.59 +0.1
603,907 + BACOVA_05128 0.65 +2.6
603,967 + BACOVA_05128 0.75 +1.2
603,967 + BACOVA_05128 0.75 -0.8
603,968 - BACOVA_05128 0.75 +1.2
603,971 + BACOVA_05128 0.75 -0.9
603,972 - BACOVA_05128 0.75 -1.3
603,972 - BACOVA_05128 0.75 +1.6
603,973 + BACOVA_05128 0.76 -0.3
603,974 - BACOVA_05128 0.76 -1.1
604,013 - BACOVA_05128 0.82 -0.8
604,021 + BACOVA_05128 0.83 +1.1
604,022 - BACOVA_05128 0.83 -0.9
604,022 - BACOVA_05128 0.83 -0.9
604,022 - BACOVA_05128 0.83 -0.3
604,122 - +0.4
604,122 - +0.9
604,124 + -0.9
604,124 + -0.4
604,125 - +0.4
604,141 + -0.8
604,143 + -0.8
604,149 + -0.2
604,152 + -0.4
604,152 + +1.0
604,153 - +0.1
604,203 - -0.2
604,203 - +0.7
604,291 + +0.2
604,292 - -1.2
604,293 + -0.4
604,293 + -0.3
604,300 + +1.5
604,300 + +0.7
604,375 + BACOVA_05129 0.14 -0.5
604,376 - BACOVA_05129 0.14 -0.2
604,376 - BACOVA_05129 0.14 -1.8
604,380 - BACOVA_05129 0.15 +0.1
604,408 - BACOVA_05129 0.16 +0.5
604,461 - BACOVA_05129 0.20 +0.4
604,480 - BACOVA_05129 0.21 -0.4
604,510 + BACOVA_05129 0.23 +1.1
604,511 - BACOVA_05129 0.23 -0.2
604,511 - BACOVA_05129 0.23 +0.5
604,531 - BACOVA_05129 0.24 -1.3
604,531 - BACOVA_05129 0.24 -0.1
604,531 - BACOVA_05129 0.24 +0.3
604,537 - BACOVA_05129 0.24 -0.8
604,537 - BACOVA_05129 0.24 -1.0
604,537 - BACOVA_05129 0.24 -1.1
604,603 - BACOVA_05129 0.29 +0.3
604,641 + BACOVA_05129 0.31 -1.0
604,642 - BACOVA_05129 0.31 +0.7
604,674 - BACOVA_05129 0.33 -0.2
604,728 - BACOVA_05129 0.37 -0.5
604,728 - BACOVA_05129 0.37 +0.4
604,741 + BACOVA_05129 0.37 -0.2
604,748 - BACOVA_05129 0.38 +0.7
604,751 + BACOVA_05129 0.38 -0.6
604,792 - BACOVA_05129 0.41 +0.6
604,848 + BACOVA_05129 0.44 -0.4
604,852 + BACOVA_05129 0.44 +1.0
604,861 + BACOVA_05129 0.45 +0.4
604,962 - BACOVA_05129 0.51 -0.1
604,979 + BACOVA_05129 0.52 -0.9
604,980 - BACOVA_05129 0.53 -0.2
605,040 + BACOVA_05129 0.56 +0.4
605,077 + BACOVA_05129 0.59 -0.6
605,077 + BACOVA_05129 0.59 -0.4
605,078 - BACOVA_05129 0.59 -1.0
605,129 - BACOVA_05129 0.62 -0.5

Or see this region's nucleotide sequence