Experiment: Mucin from porcine stomach type III 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02460 and BACOVA_02461 are separated by 1 nucleotides BACOVA_02461 and BACOVA_02462 overlap by 4 nucleotides
BACOVA_02460: BACOVA_02460 - 4Fe-4S binding domain protein, at 222,332 to 223,480
_02460
BACOVA_02461: BACOVA_02461 - hypothetical protein, at 223,482 to 224,564
_02461
BACOVA_02462: BACOVA_02462 - hypothetical protein, at 224,561 to 225,760
_02462
Position (kb) 223
224
225 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 222.814 kb on + strand, within BACOVA_02460 at 222.850 kb on - strand, within BACOVA_02460 at 222.850 kb on - strand, within BACOVA_02460 at 223.039 kb on + strand, within BACOVA_02460 at 223.039 kb on + strand, within BACOVA_02460 at 223.039 kb on + strand, within BACOVA_02460 at 223.040 kb on - strand, within BACOVA_02460 at 223.040 kb on - strand, within BACOVA_02460 at 223.046 kb on - strand, within BACOVA_02460 at 223.051 kb on + strand, within BACOVA_02460 at 223.052 kb on - strand, within BACOVA_02460 at 223.059 kb on + strand, within BACOVA_02460 at 223.065 kb on + strand, within BACOVA_02460 at 223.065 kb on + strand, within BACOVA_02460 at 223.070 kb on + strand, within BACOVA_02460 at 223.118 kb on - strand, within BACOVA_02460 at 223.121 kb on + strand, within BACOVA_02460 at 223.191 kb on - strand, within BACOVA_02460 at 223.226 kb on - strand, within BACOVA_02460 at 223.226 kb on - strand, within BACOVA_02460 at 223.271 kb on + strand, within BACOVA_02460 at 223.282 kb on + strand, within BACOVA_02460 at 223.294 kb on - strand, within BACOVA_02460 at 223.294 kb on - strand, within BACOVA_02460 at 223.294 kb on - strand, within BACOVA_02460 at 223.341 kb on + strand, within BACOVA_02460 at 223.342 kb on - strand, within BACOVA_02460 at 223.448 kb on - strand at 223.482 kb on - strand at 223.490 kb on - strand at 223.490 kb on - strand at 223.522 kb on - strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.557 kb on + strand at 223.558 kb on - strand at 223.576 kb on - strand at 223.592 kb on - strand, within BACOVA_02461 at 223.597 kb on - strand, within BACOVA_02461 at 223.613 kb on - strand, within BACOVA_02461 at 223.616 kb on + strand, within BACOVA_02461 at 223.617 kb on - strand, within BACOVA_02461 at 223.617 kb on - strand, within BACOVA_02461 at 223.617 kb on - strand, within BACOVA_02461 at 223.628 kb on + strand, within BACOVA_02461 at 223.629 kb on - strand, within BACOVA_02461 at 223.629 kb on - strand, within BACOVA_02461 at 223.629 kb on - strand, within BACOVA_02461 at 223.659 kb on - strand, within BACOVA_02461 at 223.659 kb on - strand, within BACOVA_02461 at 223.746 kb on - strand, within BACOVA_02461 at 223.757 kb on - strand, within BACOVA_02461 at 223.757 kb on - strand, within BACOVA_02461 at 223.779 kb on - strand, within BACOVA_02461 at 223.806 kb on + strand, within BACOVA_02461 at 223.807 kb on - strand, within BACOVA_02461 at 223.812 kb on - strand, within BACOVA_02461 at 223.814 kb on - strand, within BACOVA_02461 at 223.908 kb on - strand, within BACOVA_02461 at 223.915 kb on - strand, within BACOVA_02461 at 223.922 kb on + strand, within BACOVA_02461 at 223.923 kb on - strand, within BACOVA_02461 at 223.923 kb on - strand, within BACOVA_02461 at 223.976 kb on - strand, within BACOVA_02461 at 223.995 kb on - strand, within BACOVA_02461 at 224.041 kb on + strand, within BACOVA_02461 at 224.041 kb on + strand, within BACOVA_02461 at 224.081 kb on - strand, within BACOVA_02461 at 224.108 kb on - strand, within BACOVA_02461 at 224.112 kb on - strand, within BACOVA_02461 at 224.150 kb on - strand, within BACOVA_02461 at 224.150 kb on - strand, within BACOVA_02461 at 224.150 kb on - strand, within BACOVA_02461 at 224.193 kb on - strand, within BACOVA_02461 at 224.193 kb on - strand, within BACOVA_02461 at 224.197 kb on - strand, within BACOVA_02461 at 224.231 kb on - strand, within BACOVA_02461 at 224.387 kb on - strand, within BACOVA_02461 at 224.433 kb on - strand, within BACOVA_02461 at 224.460 kb on - strand at 224.460 kb on - strand at 224.465 kb on - strand at 224.541 kb on - strand at 224.541 kb on - strand at 224.541 kb on - strand at 224.555 kb on - strand at 224.555 kb on - strand at 224.575 kb on - strand at 224.610 kb on + strand at 224.614 kb on - strand at 224.617 kb on - strand at 224.617 kb on - strand at 224.620 kb on - strand at 224.665 kb on + strand at 224.666 kb on - strand at 224.666 kb on - strand at 224.670 kb on - strand at 224.674 kb on - strand at 224.674 kb on - strand at 224.674 kb on - strand at 224.706 kb on - strand, within BACOVA_02462 at 224.708 kb on + strand, within BACOVA_02462 at 224.727 kb on - strand, within BACOVA_02462 at 224.756 kb on - strand, within BACOVA_02462 at 224.767 kb on - strand, within BACOVA_02462 at 224.787 kb on - strand, within BACOVA_02462 at 224.787 kb on - strand, within BACOVA_02462 at 224.787 kb on - strand, within BACOVA_02462 at 224.792 kb on - strand, within BACOVA_02462 at 224.826 kb on - strand, within BACOVA_02462 at 224.827 kb on + strand, within BACOVA_02462 at 224.830 kb on + strand, within BACOVA_02462 at 224.831 kb on - strand, within BACOVA_02462 at 224.833 kb on - strand, within BACOVA_02462 at 224.840 kb on - strand, within BACOVA_02462 at 224.870 kb on + strand, within BACOVA_02462 at 224.882 kb on - strand, within BACOVA_02462 at 224.941 kb on - strand, within BACOVA_02462 at 224.941 kb on - strand, within BACOVA_02462 at 224.976 kb on + strand, within BACOVA_02462 at 224.981 kb on - strand, within BACOVA_02462 at 225.005 kb on - strand, within BACOVA_02462 at 225.007 kb on - strand, within BACOVA_02462 at 225.007 kb on - strand, within BACOVA_02462 at 225.007 kb on - strand, within BACOVA_02462 at 225.063 kb on - strand, within BACOVA_02462 at 225.105 kb on - strand, within BACOVA_02462 at 225.107 kb on - strand, within BACOVA_02462 at 225.107 kb on - strand, within BACOVA_02462 at 225.137 kb on - strand, within BACOVA_02462 at 225.193 kb on - strand, within BACOVA_02462 at 225.202 kb on - strand, within BACOVA_02462 at 225.202 kb on - strand, within BACOVA_02462 at 225.263 kb on + strand, within BACOVA_02462 at 225.264 kb on - strand, within BACOVA_02462 at 225.347 kb on - strand, within BACOVA_02462 at 225.353 kb on + strand, within BACOVA_02462 at 225.356 kb on - strand, within BACOVA_02462 at 225.358 kb on + strand, within BACOVA_02462 at 225.359 kb on - strand, within BACOVA_02462 at 225.363 kb on - strand, within BACOVA_02462 at 225.396 kb on - strand, within BACOVA_02462 at 225.433 kb on - strand, within BACOVA_02462 at 225.504 kb on - strand, within BACOVA_02462 at 225.504 kb on - strand, within BACOVA_02462 at 225.527 kb on - strand, within BACOVA_02462 at 225.527 kb on - strand, within BACOVA_02462 at 225.544 kb on - strand, within BACOVA_02462
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III 2.5 mg/ml (C) remove 222,814 + BACOVA_02460 0.42 +0.0 222,850 - BACOVA_02460 0.45 +2.9 222,850 - BACOVA_02460 0.45 +0.1 223,039 + BACOVA_02460 0.62 +0.3 223,039 + BACOVA_02460 0.62 +0.1 223,039 + BACOVA_02460 0.62 +0.8 223,040 - BACOVA_02460 0.62 +1.7 223,040 - BACOVA_02460 0.62 +1.4 223,046 - BACOVA_02460 0.62 +2.0 223,051 + BACOVA_02460 0.63 -0.2 223,052 - BACOVA_02460 0.63 +1.8 223,059 + BACOVA_02460 0.63 -0.2 223,065 + BACOVA_02460 0.64 -0.5 223,065 + BACOVA_02460 0.64 -1.0 223,070 + BACOVA_02460 0.64 +0.2 223,118 - BACOVA_02460 0.68 -0.1 223,121 + BACOVA_02460 0.69 -0.2 223,191 - BACOVA_02460 0.75 +0.6 223,226 - BACOVA_02460 0.78 -0.1 223,226 - BACOVA_02460 0.78 -1.0 223,271 + BACOVA_02460 0.82 -0.2 223,282 + BACOVA_02460 0.83 +1.6 223,294 - BACOVA_02460 0.84 -0.6 223,294 - BACOVA_02460 0.84 +0.6 223,294 - BACOVA_02460 0.84 +1.3 223,341 + BACOVA_02460 0.88 +0.8 223,342 - BACOVA_02460 0.88 +4.7 223,448 - +1.0 223,482 - +1.0 223,490 - +1.1 223,490 - +0.4 223,522 - +2.0 223,550 - +1.6 223,550 - +1.5 223,550 - +0.0 223,550 - +0.8 223,557 + -0.8 223,558 - +1.1 223,576 - +1.8 223,592 - BACOVA_02461 0.10 -0.5 223,597 - BACOVA_02461 0.11 +0.8 223,613 - BACOVA_02461 0.12 +1.5 223,616 + BACOVA_02461 0.12 +0.6 223,617 - BACOVA_02461 0.12 +0.5 223,617 - BACOVA_02461 0.12 +1.6 223,617 - BACOVA_02461 0.12 +0.4 223,628 + BACOVA_02461 0.13 -0.8 223,629 - BACOVA_02461 0.14 +1.1 223,629 - BACOVA_02461 0.14 +0.8 223,629 - BACOVA_02461 0.14 +1.3 223,659 - BACOVA_02461 0.16 -0.5 223,659 - BACOVA_02461 0.16 +0.3 223,746 - BACOVA_02461 0.24 +2.0 223,757 - BACOVA_02461 0.25 +1.8 223,757 - BACOVA_02461 0.25 +0.6 223,779 - BACOVA_02461 0.27 +0.4 223,806 + BACOVA_02461 0.30 +0.2 223,807 - BACOVA_02461 0.30 +0.5 223,812 - BACOVA_02461 0.30 -0.5 223,814 - BACOVA_02461 0.31 +2.1 223,908 - BACOVA_02461 0.39 +0.3 223,915 - BACOVA_02461 0.40 +0.1 223,922 + BACOVA_02461 0.41 -0.3 223,923 - BACOVA_02461 0.41 +1.0 223,923 - BACOVA_02461 0.41 +0.8 223,976 - BACOVA_02461 0.46 +0.7 223,995 - BACOVA_02461 0.47 +0.8 224,041 + BACOVA_02461 0.52 +1.4 224,041 + BACOVA_02461 0.52 -0.2 224,081 - BACOVA_02461 0.55 +0.4 224,108 - BACOVA_02461 0.58 +1.0 224,112 - BACOVA_02461 0.58 -0.4 224,150 - BACOVA_02461 0.62 +0.4 224,150 - BACOVA_02461 0.62 +0.4 224,150 - BACOVA_02461 0.62 +1.1 224,193 - BACOVA_02461 0.66 +1.2 224,193 - BACOVA_02461 0.66 +0.5 224,197 - BACOVA_02461 0.66 +1.5 224,231 - BACOVA_02461 0.69 +2.3 224,387 - BACOVA_02461 0.84 +0.2 224,433 - BACOVA_02461 0.88 +1.8 224,460 - +0.0 224,460 - +0.9 224,465 - +2.0 224,541 - +1.2 224,541 - +0.2 224,541 - +1.6 224,555 - +1.2 224,555 - -0.4 224,575 - +2.4 224,610 + -0.2 224,614 - +0.2 224,617 - +0.8 224,617 - +0.7 224,620 - +0.5 224,665 + +1.0 224,666 - -0.8 224,666 - -0.8 224,670 - +1.7 224,674 - +1.8 224,674 - +0.2 224,674 - +1.4 224,706 - BACOVA_02462 0.12 +0.4 224,708 + BACOVA_02462 0.12 +0.1 224,727 - BACOVA_02462 0.14 -0.5 224,756 - BACOVA_02462 0.16 +1.4 224,767 - BACOVA_02462 0.17 +1.7 224,787 - BACOVA_02462 0.19 +1.4 224,787 - BACOVA_02462 0.19 +2.9 224,787 - BACOVA_02462 0.19 +1.2 224,792 - BACOVA_02462 0.19 +1.4 224,826 - BACOVA_02462 0.22 +0.4 224,827 + BACOVA_02462 0.22 +0.1 224,830 + BACOVA_02462 0.22 +2.1 224,831 - BACOVA_02462 0.23 +0.8 224,833 - BACOVA_02462 0.23 +2.0 224,840 - BACOVA_02462 0.23 -0.2 224,870 + BACOVA_02462 0.26 +0.6 224,882 - BACOVA_02462 0.27 +2.0 224,941 - BACOVA_02462 0.32 +0.2 224,941 - BACOVA_02462 0.32 +0.7 224,976 + BACOVA_02462 0.35 -0.8 224,981 - BACOVA_02462 0.35 +2.4 225,005 - BACOVA_02462 0.37 +1.4 225,007 - BACOVA_02462 0.37 +0.4 225,007 - BACOVA_02462 0.37 +0.8 225,007 - BACOVA_02462 0.37 +1.3 225,063 - BACOVA_02462 0.42 +1.3 225,105 - BACOVA_02462 0.45 -0.6 225,107 - BACOVA_02462 0.46 +1.1 225,107 - BACOVA_02462 0.46 +1.2 225,137 - BACOVA_02462 0.48 +0.9 225,193 - BACOVA_02462 0.53 +0.8 225,202 - BACOVA_02462 0.53 +2.0 225,202 - BACOVA_02462 0.53 -1.2 225,263 + BACOVA_02462 0.58 +0.2 225,264 - BACOVA_02462 0.59 +0.9 225,347 - BACOVA_02462 0.66 +0.8 225,353 + BACOVA_02462 0.66 +0.8 225,356 - BACOVA_02462 0.66 -0.1 225,358 + BACOVA_02462 0.66 +2.3 225,359 - BACOVA_02462 0.67 +2.2 225,363 - BACOVA_02462 0.67 +1.7 225,396 - BACOVA_02462 0.70 +0.5 225,433 - BACOVA_02462 0.73 +1.2 225,504 - BACOVA_02462 0.79 -0.3 225,504 - BACOVA_02462 0.79 -0.0 225,527 - BACOVA_02462 0.81 +2.3 225,527 - BACOVA_02462 0.81 +0.4 225,544 - BACOVA_02462 0.82 +2.1
Or see this region's nucleotide sequence