Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01364

Experiment: Mucin from porcine stomach type III 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01361 and BACOVA_01362 overlap by 14 nucleotidesBACOVA_01362 and BACOVA_01364 are separated by 19 nucleotidesBACOVA_01364 and BACOVA_01363 overlap by 30 nucleotidesBACOVA_01363 and BACOVA_01365 are separated by 139 nucleotides BACOVA_01361: BACOVA_01361 - deoxyribose-phosphate aldolase, at 25,272 to 26,174 _01361 BACOVA_01362: BACOVA_01362 - MazG nucleotide pyrophosphohydrolase domain protein, at 26,161 to 26,499 _01362 BACOVA_01364: BACOVA_01364 - D-tyrosyl-tRNA(Tyr) deacylase, at 26,519 to 26,971 _01364 BACOVA_01363: BACOVA_01363 - hypothetical protein, at 26,942 to 27,070 _01363 BACOVA_01365: BACOVA_01365 - excinuclease ABC, C subunit, at 27,210 to 29,045 _01365 Position (kb) 26 27Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 25.570 kb on + strand, within BACOVA_01361at 25.571 kb on - strand, within BACOVA_01361at 25.578 kb on + strand, within BACOVA_01361at 25.615 kb on - strand, within BACOVA_01361at 25.627 kb on + strand, within BACOVA_01361at 25.678 kb on - strand, within BACOVA_01361at 25.736 kb on + strand, within BACOVA_01361at 25.736 kb on + strand, within BACOVA_01361at 25.737 kb on - strand, within BACOVA_01361at 25.767 kb on + strand, within BACOVA_01361at 25.768 kb on - strand, within BACOVA_01361at 25.837 kb on - strand, within BACOVA_01361at 25.893 kb on + strand, within BACOVA_01361at 25.893 kb on + strand, within BACOVA_01361at 25.893 kb on + strand, within BACOVA_01361at 25.894 kb on - strand, within BACOVA_01361at 25.894 kb on - strand, within BACOVA_01361at 25.895 kb on + strand, within BACOVA_01361at 25.928 kb on - strand, within BACOVA_01361at 25.988 kb on + strand, within BACOVA_01361at 25.989 kb on - strand, within BACOVA_01361at 25.991 kb on + strand, within BACOVA_01361at 26.001 kb on - strand, within BACOVA_01361at 26.013 kb on - strand, within BACOVA_01361at 26.120 kb on + strandat 26.121 kb on - strandat 26.143 kb on + strandat 26.144 kb on - strandat 26.144 kb on - strandat 26.162 kb on + strandat 26.163 kb on - strandat 26.163 kb on - strandat 26.209 kb on - strand, within BACOVA_01362at 26.257 kb on + strand, within BACOVA_01362at 26.257 kb on + strand, within BACOVA_01362at 26.257 kb on + strand, within BACOVA_01362at 26.257 kb on + strand, within BACOVA_01362at 26.257 kb on + strand, within BACOVA_01362at 26.258 kb on - strand, within BACOVA_01362at 26.263 kb on + strand, within BACOVA_01362at 26.264 kb on - strand, within BACOVA_01362at 26.323 kb on + strand, within BACOVA_01362at 26.323 kb on + strand, within BACOVA_01362at 26.323 kb on + strand, within BACOVA_01362at 26.323 kb on + strand, within BACOVA_01362at 26.328 kb on + strand, within BACOVA_01362at 26.328 kb on + strand, within BACOVA_01362at 26.363 kb on + strand, within BACOVA_01362at 26.395 kb on + strand, within BACOVA_01362at 26.395 kb on + strand, within BACOVA_01362at 26.396 kb on - strand, within BACOVA_01362at 26.418 kb on + strand, within BACOVA_01362at 26.419 kb on - strand, within BACOVA_01362at 26.499 kb on + strandat 26.500 kb on - strandat 26.513 kb on + strandat 26.517 kb on + strandat 26.520 kb on + strandat 26.521 kb on - strandat 26.546 kb on + strandat 26.546 kb on + strandat 26.546 kb on + strandat 26.547 kb on - strandat 26.547 kb on - strandat 26.547 kb on - strandat 26.547 kb on - strandat 26.547 kb on - strandat 26.548 kb on + strandat 26.549 kb on - strandat 26.606 kb on - strand, within BACOVA_01364at 26.655 kb on + strand, within BACOVA_01364at 26.656 kb on - strand, within BACOVA_01364at 26.666 kb on - strand, within BACOVA_01364at 26.693 kb on - strand, within BACOVA_01364at 26.694 kb on + strand, within BACOVA_01364at 26.695 kb on - strand, within BACOVA_01364at 26.771 kb on + strand, within BACOVA_01364at 26.789 kb on + strand, within BACOVA_01364at 26.790 kb on - strand, within BACOVA_01364at 26.816 kb on + strand, within BACOVA_01364at 26.886 kb on - strand, within BACOVA_01364at 26.915 kb on - strand, within BACOVA_01364at 26.957 kb on + strandat 26.957 kb on + strandat 26.957 kb on + strandat 26.957 kb on + strandat 26.957 kb on + strandat 26.957 kb on + strandat 26.958 kb on - strandat 26.958 kb on - strandat 26.963 kb on + strandat 26.973 kb on - strand, within BACOVA_01363at 26.976 kb on - strand, within BACOVA_01363at 26.976 kb on - strand, within BACOVA_01363at 26.979 kb on + strand, within BACOVA_01363at 27.089 kb on - strandat 27.117 kb on + strandat 27.123 kb on + strandat 27.132 kb on + strandat 27.133 kb on - strandat 27.133 kb on - strandat 27.143 kb on - strandat 27.203 kb on + strandat 27.204 kb on - strandat 27.228 kb on + strandat 27.241 kb on - strandat 27.241 kb on - strandat 27.317 kb on + strandat 27.318 kb on - strandat 27.373 kb on - strandat 27.384 kb on + strandat 27.405 kb on - strand, within BACOVA_01365at 27.573 kb on + strand, within BACOVA_01365at 27.741 kb on + strand, within BACOVA_01365at 27.742 kb on - strand, within BACOVA_01365at 27.742 kb on - strand, within BACOVA_01365at 27.742 kb on - strand, within BACOVA_01365at 27.743 kb on + strand, within BACOVA_01365at 27.744 kb on - strand, within BACOVA_01365at 27.744 kb on - strand, within BACOVA_01365at 27.749 kb on - strand, within BACOVA_01365at 27.776 kb on + strand, within BACOVA_01365at 27.943 kb on - strand, within BACOVA_01365

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Per-strain Table

Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III 2.5 mg/ml (C)
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25,570 + BACOVA_01361 0.33 -0.9
25,571 - BACOVA_01361 0.33 -0.6
25,578 + BACOVA_01361 0.34 -0.4
25,615 - BACOVA_01361 0.38 -0.2
25,627 + BACOVA_01361 0.39 -0.6
25,678 - BACOVA_01361 0.45 -0.6
25,736 + BACOVA_01361 0.51 -0.8
25,736 + BACOVA_01361 0.51 +0.3
25,737 - BACOVA_01361 0.51 -0.6
25,767 + BACOVA_01361 0.55 -1.5
25,768 - BACOVA_01361 0.55 -1.1
25,837 - BACOVA_01361 0.63 +1.0
25,893 + BACOVA_01361 0.69 -0.3
25,893 + BACOVA_01361 0.69 -1.8
25,893 + BACOVA_01361 0.69 -2.4
25,894 - BACOVA_01361 0.69 +0.6
25,894 - BACOVA_01361 0.69 -0.2
25,895 + BACOVA_01361 0.69 -2.0
25,928 - BACOVA_01361 0.73 -1.5
25,988 + BACOVA_01361 0.79 -0.9
25,989 - BACOVA_01361 0.79 +1.0
25,991 + BACOVA_01361 0.80 -1.3
26,001 - BACOVA_01361 0.81 +1.0
26,013 - BACOVA_01361 0.82 -1.0
26,120 + +1.0
26,121 - -0.0
26,143 + +0.7
26,144 - +1.2
26,144 - -1.4
26,162 + -0.9
26,163 - -1.8
26,163 - -0.8
26,209 - BACOVA_01362 0.14 -0.8
26,257 + BACOVA_01362 0.28 -0.9
26,257 + BACOVA_01362 0.28 -1.2
26,257 + BACOVA_01362 0.28 -1.2
26,257 + BACOVA_01362 0.28 -1.6
26,257 + BACOVA_01362 0.28 -1.2
26,258 - BACOVA_01362 0.29 +0.4
26,263 + BACOVA_01362 0.30 -2.0
26,264 - BACOVA_01362 0.30 -0.1
26,323 + BACOVA_01362 0.48 -0.6
26,323 + BACOVA_01362 0.48 -1.0
26,323 + BACOVA_01362 0.48 -1.0
26,323 + BACOVA_01362 0.48 -0.3
26,328 + BACOVA_01362 0.49 -0.6
26,328 + BACOVA_01362 0.49 +0.7
26,363 + BACOVA_01362 0.60 -0.3
26,395 + BACOVA_01362 0.69 -0.0
26,395 + BACOVA_01362 0.69 -0.7
26,396 - BACOVA_01362 0.69 -1.0
26,418 + BACOVA_01362 0.76 +0.2
26,419 - BACOVA_01362 0.76 -0.2
26,499 + -0.0
26,500 - +0.2
26,513 + -0.0
26,517 + -0.0
26,520 + -0.4
26,521 - +1.0
26,546 + +0.5
26,546 + -1.4
26,546 + +2.6
26,547 - -2.9
26,547 - +1.0
26,547 - -1.5
26,547 - -1.3
26,547 - +1.8
26,548 + -1.6
26,549 - -0.0
26,606 - BACOVA_01364 0.19 -0.2
26,655 + BACOVA_01364 0.30 -2.0
26,656 - BACOVA_01364 0.30 +0.6
26,666 - BACOVA_01364 0.32 -0.6
26,693 - BACOVA_01364 0.38 +0.3
26,694 + BACOVA_01364 0.39 +3.0
26,695 - BACOVA_01364 0.39 -0.6
26,771 + BACOVA_01364 0.56 -1.3
26,789 + BACOVA_01364 0.60 -0.3
26,790 - BACOVA_01364 0.60 -1.0
26,816 + BACOVA_01364 0.66 -0.4
26,886 - BACOVA_01364 0.81 -0.8
26,915 - BACOVA_01364 0.87 -0.6
26,957 + -0.4
26,957 + -1.6
26,957 + -0.2
26,957 + +1.6
26,957 + +0.8
26,957 + +1.3
26,958 - -2.0
26,958 - -0.8
26,963 + +0.8
26,973 - BACOVA_01363 0.24 +0.9
26,976 - BACOVA_01363 0.26 -1.8
26,976 - BACOVA_01363 0.26 -1.0
26,979 + BACOVA_01363 0.29 -0.8
27,089 - -0.4
27,117 + -1.3
27,123 + -0.1
27,132 + +1.3
27,133 - +2.0
27,133 - -0.5
27,143 - -0.3
27,203 + -0.3
27,204 - -0.4
27,228 + -1.1
27,241 - -0.2
27,241 - -0.7
27,317 + +1.6
27,318 - -1.4
27,373 - +0.6
27,384 + -0.7
27,405 - BACOVA_01365 0.11 +0.3
27,573 + BACOVA_01365 0.20 -0.4
27,741 + BACOVA_01365 0.29 -0.3
27,742 - BACOVA_01365 0.29 +0.5
27,742 - BACOVA_01365 0.29 -1.6
27,742 - BACOVA_01365 0.29 +0.3
27,743 + BACOVA_01365 0.29 -1.6
27,744 - BACOVA_01365 0.29 -0.0
27,744 - BACOVA_01365 0.29 -0.6
27,749 - BACOVA_01365 0.29 -2.2
27,776 + BACOVA_01365 0.31 +0.1
27,943 - BACOVA_01365 0.40 -0.1

Or see this region's nucleotide sequence