Experiment: Lentilan from mushroom 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04793 and BACOVA_04794 overlap by 20 nucleotides BACOVA_04794 and BACOVA_04795 are separated by 200 nucleotides
BACOVA_04793: BACOVA_04793 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 145,787 to 148,090
_04793
BACOVA_04794: BACOVA_04794 - hypothetical protein, at 148,071 to 149,345
_04794
BACOVA_04795: BACOVA_04795 - site-specific recombinase, phage integrase family, at 149,546 to 150,604
_04795
Position (kb) 148
149
150 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 147.071 kb on + strand, within BACOVA_04793 at 147.151 kb on + strand, within BACOVA_04793 at 147.151 kb on + strand, within BACOVA_04793 at 147.154 kb on + strand, within BACOVA_04793 at 147.171 kb on + strand, within BACOVA_04793 at 147.212 kb on + strand, within BACOVA_04793 at 147.212 kb on + strand, within BACOVA_04793 at 147.212 kb on + strand, within BACOVA_04793 at 147.218 kb on + strand, within BACOVA_04793 at 147.218 kb on + strand, within BACOVA_04793 at 147.248 kb on + strand, within BACOVA_04793 at 147.277 kb on + strand, within BACOVA_04793 at 147.286 kb on + strand, within BACOVA_04793 at 147.302 kb on + strand, within BACOVA_04793 at 147.302 kb on + strand, within BACOVA_04793 at 147.341 kb on + strand, within BACOVA_04793 at 147.344 kb on + strand, within BACOVA_04793 at 147.356 kb on + strand, within BACOVA_04793 at 147.404 kb on + strand, within BACOVA_04793 at 147.484 kb on + strand, within BACOVA_04793 at 147.551 kb on + strand, within BACOVA_04793 at 147.589 kb on + strand, within BACOVA_04793 at 147.589 kb on + strand, within BACOVA_04793 at 147.599 kb on - strand, within BACOVA_04793 at 147.603 kb on + strand, within BACOVA_04793 at 147.603 kb on + strand, within BACOVA_04793 at 147.603 kb on + strand, within BACOVA_04793 at 147.604 kb on - strand, within BACOVA_04793 at 147.611 kb on + strand, within BACOVA_04793 at 147.611 kb on + strand, within BACOVA_04793 at 147.611 kb on + strand, within BACOVA_04793 at 147.640 kb on + strand, within BACOVA_04793 at 147.726 kb on + strand, within BACOVA_04793 at 147.726 kb on + strand, within BACOVA_04793 at 147.730 kb on + strand, within BACOVA_04793 at 147.730 kb on + strand, within BACOVA_04793 at 147.757 kb on + strand, within BACOVA_04793 at 147.763 kb on + strand, within BACOVA_04793 at 147.797 kb on - strand, within BACOVA_04793 at 147.808 kb on + strand, within BACOVA_04793 at 147.868 kb on + strand at 147.901 kb on + strand at 147.901 kb on + strand at 147.961 kb on - strand at 148.003 kb on + strand at 148.007 kb on + strand at 148.007 kb on + strand at 148.007 kb on + strand at 148.007 kb on + strand at 148.008 kb on - strand at 148.008 kb on - strand at 148.008 kb on - strand at 148.055 kb on + strand at 148.056 kb on - strand at 148.069 kb on + strand at 148.072 kb on + strand at 148.076 kb on + strand at 149.169 kb on + strand, within BACOVA_04794 at 149.366 kb on - strand at 149.366 kb on - strand at 149.371 kb on - strand at 149.371 kb on - strand at 149.382 kb on - strand at 149.441 kb on + strand at 149.442 kb on - strand at 149.442 kb on - strand at 149.442 kb on - strand at 149.457 kb on + strand at 149.508 kb on - strand at 149.541 kb on - strand at 149.541 kb on - strand at 149.541 kb on - strand at 149.609 kb on + strand at 149.610 kb on - strand at 149.633 kb on + strand at 149.668 kb on + strand, within BACOVA_04795 at 149.668 kb on + strand, within BACOVA_04795 at 149.669 kb on - strand, within BACOVA_04795 at 149.672 kb on + strand, within BACOVA_04795 at 149.672 kb on + strand, within BACOVA_04795 at 149.672 kb on + strand, within BACOVA_04795 at 149.673 kb on - strand, within BACOVA_04795 at 149.673 kb on - strand, within BACOVA_04795 at 149.673 kb on - strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.677 kb on - strand, within BACOVA_04795 at 149.677 kb on - strand, within BACOVA_04795 at 149.677 kb on - strand, within BACOVA_04795 at 149.677 kb on - strand, within BACOVA_04795 at 149.681 kb on - strand, within BACOVA_04795 at 149.705 kb on + strand, within BACOVA_04795 at 149.766 kb on + strand, within BACOVA_04795 at 149.769 kb on - strand, within BACOVA_04795 at 149.796 kb on - strand, within BACOVA_04795 at 149.809 kb on + strand, within BACOVA_04795 at 149.809 kb on + strand, within BACOVA_04795 at 149.929 kb on + strand, within BACOVA_04795 at 149.929 kb on + strand, within BACOVA_04795 at 149.945 kb on - strand, within BACOVA_04795 at 149.954 kb on + strand, within BACOVA_04795 at 149.954 kb on + strand, within BACOVA_04795 at 149.968 kb on + strand, within BACOVA_04795 at 149.969 kb on - strand, within BACOVA_04795 at 149.969 kb on - strand, within BACOVA_04795 at 149.969 kb on - strand, within BACOVA_04795 at 149.969 kb on - strand, within BACOVA_04795 at 149.974 kb on + strand, within BACOVA_04795 at 149.975 kb on - strand, within BACOVA_04795 at 150.026 kb on - strand, within BACOVA_04795 at 150.035 kb on + strand, within BACOVA_04795 at 150.035 kb on + strand, within BACOVA_04795 at 150.036 kb on - strand, within BACOVA_04795 at 150.062 kb on + strand, within BACOVA_04795 at 150.063 kb on - strand, within BACOVA_04795 at 150.066 kb on - strand, within BACOVA_04795 at 150.072 kb on - strand, within BACOVA_04795 at 150.129 kb on - strand, within BACOVA_04795 at 150.211 kb on + strand, within BACOVA_04795 at 150.241 kb on - strand, within BACOVA_04795 at 150.246 kb on - strand, within BACOVA_04795 at 150.268 kb on - strand, within BACOVA_04795 at 150.274 kb on + strand, within BACOVA_04795 at 150.274 kb on + strand, within BACOVA_04795 at 150.274 kb on + strand, within BACOVA_04795 at 150.275 kb on - strand, within BACOVA_04795 at 150.293 kb on - strand, within BACOVA_04795 at 150.319 kb on + strand, within BACOVA_04795 at 150.319 kb on + strand, within BACOVA_04795 at 150.320 kb on - strand, within BACOVA_04795 at 150.322 kb on - strand, within BACOVA_04795 at 150.325 kb on + strand, within BACOVA_04795 at 150.325 kb on + strand, within BACOVA_04795 at 150.325 kb on + strand, within BACOVA_04795 at 150.326 kb on - strand, within BACOVA_04795 at 150.340 kb on + strand, within BACOVA_04795 at 150.340 kb on + strand, within BACOVA_04795
Per-strain Table
Position Strand Gene LocusTag Fraction Lentilan from mushroom 2.5 mg/ml (C) remove 147,071 + BACOVA_04793 0.56 -1.3 147,151 + BACOVA_04793 0.59 -0.5 147,151 + BACOVA_04793 0.59 -0.9 147,154 + BACOVA_04793 0.59 +1.1 147,171 + BACOVA_04793 0.60 +2.1 147,212 + BACOVA_04793 0.62 +0.6 147,212 + BACOVA_04793 0.62 -0.6 147,212 + BACOVA_04793 0.62 +0.2 147,218 + BACOVA_04793 0.62 -0.0 147,218 + BACOVA_04793 0.62 -0.9 147,248 + BACOVA_04793 0.63 -0.3 147,277 + BACOVA_04793 0.65 -0.5 147,286 + BACOVA_04793 0.65 -0.2 147,302 + BACOVA_04793 0.66 +0.2 147,302 + BACOVA_04793 0.66 -0.5 147,341 + BACOVA_04793 0.67 -1.3 147,344 + BACOVA_04793 0.68 -0.2 147,356 + BACOVA_04793 0.68 -0.4 147,404 + BACOVA_04793 0.70 +0.5 147,484 + BACOVA_04793 0.74 +0.1 147,551 + BACOVA_04793 0.77 -2.1 147,589 + BACOVA_04793 0.78 -0.9 147,589 + BACOVA_04793 0.78 -0.7 147,599 - BACOVA_04793 0.79 -1.1 147,603 + BACOVA_04793 0.79 +0.4 147,603 + BACOVA_04793 0.79 +0.1 147,603 + BACOVA_04793 0.79 -0.1 147,604 - BACOVA_04793 0.79 -0.9 147,611 + BACOVA_04793 0.79 -0.5 147,611 + BACOVA_04793 0.79 -1.0 147,611 + BACOVA_04793 0.79 +0.6 147,640 + BACOVA_04793 0.80 -0.9 147,726 + BACOVA_04793 0.84 -0.8 147,726 + BACOVA_04793 0.84 -0.2 147,730 + BACOVA_04793 0.84 +0.3 147,730 + BACOVA_04793 0.84 -2.1 147,757 + BACOVA_04793 0.86 -0.9 147,763 + BACOVA_04793 0.86 -0.2 147,797 - BACOVA_04793 0.87 -0.3 147,808 + BACOVA_04793 0.88 -0.6 147,868 + +0.1 147,901 + -0.7 147,901 + +0.3 147,961 - -0.2 148,003 + -0.1 148,007 + -0.4 148,007 + +0.1 148,007 + -1.3 148,007 + -0.2 148,008 - -2.4 148,008 - -1.4 148,008 - +0.9 148,055 + +0.1 148,056 - +2.1 148,069 + +0.2 148,072 + +0.4 148,076 + +0.7 149,169 + BACOVA_04794 0.86 +1.1 149,366 - -0.7 149,366 - -0.3 149,371 - -1.1 149,371 - -0.3 149,382 - +2.1 149,441 + +0.3 149,442 - -0.5 149,442 - +0.0 149,442 - -1.7 149,457 + +0.1 149,508 - -0.1 149,541 - -0.2 149,541 - -0.3 149,541 - +0.1 149,609 + -2.9 149,610 - +0.0 149,633 + -0.4 149,668 + BACOVA_04795 0.12 -0.9 149,668 + BACOVA_04795 0.12 -0.4 149,669 - BACOVA_04795 0.12 -0.1 149,672 + BACOVA_04795 0.12 -0.6 149,672 + BACOVA_04795 0.12 -1.3 149,672 + BACOVA_04795 0.12 -0.4 149,673 - BACOVA_04795 0.12 -0.3 149,673 - BACOVA_04795 0.12 -0.5 149,673 - BACOVA_04795 0.12 -0.5 149,676 + BACOVA_04795 0.12 -1.3 149,676 + BACOVA_04795 0.12 +0.6 149,676 + BACOVA_04795 0.12 -0.7 149,676 + BACOVA_04795 0.12 -0.2 149,676 + BACOVA_04795 0.12 -0.3 149,676 + BACOVA_04795 0.12 -0.2 149,676 + BACOVA_04795 0.12 -0.5 149,676 + BACOVA_04795 0.12 -0.3 149,676 + BACOVA_04795 0.12 -1.3 149,677 - BACOVA_04795 0.12 +0.3 149,677 - BACOVA_04795 0.12 -0.7 149,677 - BACOVA_04795 0.12 -1.3 149,677 - BACOVA_04795 0.12 +0.0 149,681 - BACOVA_04795 0.13 -0.2 149,705 + BACOVA_04795 0.15 +0.1 149,766 + BACOVA_04795 0.21 -0.2 149,769 - BACOVA_04795 0.21 -1.7 149,796 - BACOVA_04795 0.24 -0.2 149,809 + BACOVA_04795 0.25 -0.1 149,809 + BACOVA_04795 0.25 -0.2 149,929 + BACOVA_04795 0.36 +0.3 149,929 + BACOVA_04795 0.36 +1.1 149,945 - BACOVA_04795 0.38 -0.6 149,954 + BACOVA_04795 0.39 +1.1 149,954 + BACOVA_04795 0.39 +0.3 149,968 + BACOVA_04795 0.40 +0.5 149,969 - BACOVA_04795 0.40 -1.1 149,969 - BACOVA_04795 0.40 -0.3 149,969 - BACOVA_04795 0.40 -0.3 149,969 - BACOVA_04795 0.40 -0.3 149,974 + BACOVA_04795 0.40 -1.7 149,975 - BACOVA_04795 0.41 -1.6 150,026 - BACOVA_04795 0.45 -0.2 150,035 + BACOVA_04795 0.46 +0.8 150,035 + BACOVA_04795 0.46 -1.7 150,036 - BACOVA_04795 0.46 -0.1 150,062 + BACOVA_04795 0.49 -1.7 150,063 - BACOVA_04795 0.49 -0.3 150,066 - BACOVA_04795 0.49 +0.5 150,072 - BACOVA_04795 0.50 +0.6 150,129 - BACOVA_04795 0.55 -0.8 150,211 + BACOVA_04795 0.63 +0.4 150,241 - BACOVA_04795 0.66 -0.1 150,246 - BACOVA_04795 0.66 -0.0 150,268 - BACOVA_04795 0.68 -2.1 150,274 + BACOVA_04795 0.69 -0.9 150,274 + BACOVA_04795 0.69 -1.3 150,274 + BACOVA_04795 0.69 -0.4 150,275 - BACOVA_04795 0.69 -0.6 150,293 - BACOVA_04795 0.71 -0.5 150,319 + BACOVA_04795 0.73 -1.4 150,319 + BACOVA_04795 0.73 -0.6 150,320 - BACOVA_04795 0.73 -0.5 150,322 - BACOVA_04795 0.73 -0.1 150,325 + BACOVA_04795 0.74 -0.9 150,325 + BACOVA_04795 0.74 -0.8 150,325 + BACOVA_04795 0.74 -2.0 150,326 - BACOVA_04795 0.74 -0.1 150,340 + BACOVA_04795 0.75 -0.1 150,340 + BACOVA_04795 0.75 -1.4
Or see this region's nucleotide sequence