Experiment: Lentilan from mushroom 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04791 and BACOVA_04792 are separated by 144 nucleotides BACOVA_04792 and BACOVA_04793 overlap by 11 nucleotides
BACOVA_04791: BACOVA_04791 - Eco57I restriction endonuclease, at 141,688 to 144,387
_04791
BACOVA_04792: BACOVA_04792 - hypothetical protein, at 144,532 to 145,797
_04792
BACOVA_04793: BACOVA_04793 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 145,787 to 148,090
_04793
Position (kb) 144
145
146 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 143.600 kb on + strand, within BACOVA_04791 at 143.601 kb on - strand, within BACOVA_04791 at 143.601 kb on - strand, within BACOVA_04791 at 143.636 kb on + strand, within BACOVA_04791 at 143.636 kb on + strand, within BACOVA_04791 at 143.637 kb on - strand, within BACOVA_04791 at 143.677 kb on + strand, within BACOVA_04791 at 143.678 kb on - strand, within BACOVA_04791 at 143.683 kb on + strand, within BACOVA_04791 at 143.688 kb on + strand, within BACOVA_04791 at 143.721 kb on + strand, within BACOVA_04791 at 143.739 kb on - strand, within BACOVA_04791 at 143.739 kb on - strand, within BACOVA_04791 at 143.791 kb on - strand, within BACOVA_04791 at 143.795 kb on + strand, within BACOVA_04791 at 143.796 kb on - strand, within BACOVA_04791 at 143.801 kb on - strand, within BACOVA_04791 at 143.822 kb on + strand, within BACOVA_04791 at 143.832 kb on + strand, within BACOVA_04791 at 143.833 kb on - strand, within BACOVA_04791 at 143.874 kb on + strand, within BACOVA_04791 at 143.874 kb on + strand, within BACOVA_04791 at 143.874 kb on + strand, within BACOVA_04791 at 143.874 kb on + strand, within BACOVA_04791 at 143.874 kb on + strand, within BACOVA_04791 at 143.875 kb on - strand, within BACOVA_04791 at 143.875 kb on - strand, within BACOVA_04791 at 143.875 kb on - strand, within BACOVA_04791 at 143.875 kb on - strand, within BACOVA_04791 at 143.875 kb on - strand, within BACOVA_04791 at 143.885 kb on + strand, within BACOVA_04791 at 143.886 kb on - strand, within BACOVA_04791 at 143.890 kb on + strand, within BACOVA_04791 at 143.909 kb on - strand, within BACOVA_04791 at 143.964 kb on + strand, within BACOVA_04791 at 143.977 kb on + strand, within BACOVA_04791 at 143.978 kb on - strand, within BACOVA_04791 at 143.981 kb on + strand, within BACOVA_04791 at 143.988 kb on + strand, within BACOVA_04791 at 143.988 kb on + strand, within BACOVA_04791 at 143.989 kb on - strand, within BACOVA_04791 at 143.997 kb on + strand, within BACOVA_04791 at 143.997 kb on + strand, within BACOVA_04791 at 143.998 kb on - strand, within BACOVA_04791 at 144.021 kb on - strand, within BACOVA_04791 at 144.073 kb on - strand, within BACOVA_04791 at 144.096 kb on + strand, within BACOVA_04791 at 144.097 kb on - strand, within BACOVA_04791 at 144.125 kb on + strand at 144.176 kb on - strand at 144.236 kb on + strand at 144.236 kb on + strand at 144.237 kb on - strand at 144.237 kb on - strand at 144.237 kb on - strand at 144.240 kb on + strand at 144.257 kb on + strand at 144.258 kb on - strand at 144.282 kb on + strand at 144.292 kb on + strand at 144.294 kb on + strand at 144.294 kb on + strand at 144.295 kb on - strand at 144.300 kb on + strand at 144.301 kb on - strand at 144.303 kb on + strand at 144.304 kb on - strand at 144.305 kb on + strand at 144.358 kb on - strand at 144.359 kb on + strand at 144.360 kb on - strand at 144.388 kb on + strand at 144.389 kb on - strand at 144.389 kb on - strand at 144.389 kb on - strand at 144.417 kb on - strand at 144.417 kb on - strand at 144.420 kb on + strand at 144.421 kb on - strand at 144.423 kb on + strand at 144.424 kb on - strand at 144.460 kb on + strand at 144.461 kb on - strand at 144.470 kb on + strand at 144.470 kb on + strand at 144.477 kb on - strand at 144.480 kb on + strand at 144.485 kb on + strand at 144.521 kb on - strand at 144.525 kb on + strand at 144.526 kb on - strand at 144.534 kb on - strand at 144.546 kb on + strand at 144.547 kb on - strand at 144.562 kb on + strand at 144.562 kb on + strand at 144.563 kb on - strand at 144.563 kb on - strand at 144.564 kb on + strand at 144.587 kb on - strand at 144.625 kb on + strand at 144.625 kb on + strand at 144.625 kb on + strand at 144.625 kb on + strand at 144.625 kb on + strand at 144.625 kb on + strand at 144.626 kb on - strand at 144.626 kb on - strand at 144.626 kb on - strand at 144.626 kb on - strand at 144.629 kb on + strand at 144.629 kb on + strand at 144.629 kb on + strand at 144.629 kb on + strand at 144.629 kb on + strand at 144.630 kb on - strand at 144.630 kb on - strand at 144.630 kb on - strand at 144.631 kb on + strand at 144.649 kb on + strand at 144.649 kb on + strand at 144.651 kb on + strand at 144.651 kb on + strand at 144.652 kb on - strand at 144.652 kb on - strand at 144.658 kb on + strand at 144.658 kb on + strand at 144.707 kb on + strand, within BACOVA_04792 at 144.757 kb on + strand, within BACOVA_04792 at 144.770 kb on - strand, within BACOVA_04792 at 144.783 kb on + strand, within BACOVA_04792 at 144.807 kb on - strand, within BACOVA_04792 at 144.807 kb on - strand, within BACOVA_04792 at 144.810 kb on + strand, within BACOVA_04792 at 144.810 kb on + strand, within BACOVA_04792 at 144.810 kb on + strand, within BACOVA_04792 at 144.810 kb on + strand, within BACOVA_04792 at 144.895 kb on - strand, within BACOVA_04792 at 144.918 kb on + strand, within BACOVA_04792 at 144.918 kb on + strand, within BACOVA_04792 at 144.967 kb on + strand, within BACOVA_04792 at 144.967 kb on + strand, within BACOVA_04792 at 144.968 kb on - strand, within BACOVA_04792 at 144.990 kb on + strand, within BACOVA_04792 at 144.992 kb on + strand, within BACOVA_04792 at 145.008 kb on + strand, within BACOVA_04792 at 145.009 kb on - strand, within BACOVA_04792 at 145.074 kb on + strand, within BACOVA_04792 at 145.085 kb on - strand, within BACOVA_04792 at 145.123 kb on + strand, within BACOVA_04792 at 145.123 kb on + strand, within BACOVA_04792 at 145.124 kb on - strand, within BACOVA_04792 at 145.124 kb on - strand, within BACOVA_04792 at 145.147 kb on - strand, within BACOVA_04792 at 145.300 kb on + strand, within BACOVA_04792 at 145.301 kb on - strand, within BACOVA_04792 at 145.304 kb on + strand, within BACOVA_04792 at 145.304 kb on + strand, within BACOVA_04792 at 145.304 kb on + strand, within BACOVA_04792 at 145.304 kb on + strand, within BACOVA_04792 at 145.305 kb on - strand, within BACOVA_04792 at 145.305 kb on - strand, within BACOVA_04792 at 145.306 kb on + strand, within BACOVA_04792 at 145.306 kb on + strand, within BACOVA_04792 at 145.306 kb on + strand, within BACOVA_04792 at 145.306 kb on + strand, within BACOVA_04792 at 145.306 kb on + strand, within BACOVA_04792 at 145.307 kb on - strand, within BACOVA_04792 at 145.307 kb on - strand, within BACOVA_04792 at 145.307 kb on - strand, within BACOVA_04792 at 145.308 kb on + strand, within BACOVA_04792 at 145.308 kb on + strand, within BACOVA_04792 at 145.308 kb on + strand, within BACOVA_04792 at 145.308 kb on + strand, within BACOVA_04792 at 145.309 kb on - strand, within BACOVA_04792 at 145.309 kb on - strand, within BACOVA_04792 at 145.309 kb on - strand, within BACOVA_04792 at 145.325 kb on - strand, within BACOVA_04792 at 145.355 kb on - strand, within BACOVA_04792 at 145.368 kb on + strand, within BACOVA_04792 at 145.374 kb on + strand, within BACOVA_04792 at 145.403 kb on - strand, within BACOVA_04792 at 145.405 kb on - strand, within BACOVA_04792 at 145.405 kb on - strand, within BACOVA_04792 at 145.408 kb on - strand, within BACOVA_04792 at 145.408 kb on - strand, within BACOVA_04792 at 145.417 kb on + strand, within BACOVA_04792 at 145.418 kb on - strand, within BACOVA_04792 at 145.426 kb on - strand, within BACOVA_04792 at 145.445 kb on - strand, within BACOVA_04792 at 145.454 kb on - strand, within BACOVA_04792 at 145.454 kb on - strand, within BACOVA_04792 at 145.462 kb on - strand, within BACOVA_04792 at 145.462 kb on - strand, within BACOVA_04792 at 145.462 kb on - strand, within BACOVA_04792 at 145.465 kb on - strand, within BACOVA_04792 at 145.465 kb on - strand, within BACOVA_04792 at 145.465 kb on - strand, within BACOVA_04792 at 145.473 kb on + strand, within BACOVA_04792 at 145.473 kb on + strand, within BACOVA_04792 at 145.487 kb on + strand, within BACOVA_04792 at 145.488 kb on - strand, within BACOVA_04792 at 145.510 kb on + strand, within BACOVA_04792 at 145.511 kb on - strand, within BACOVA_04792 at 145.546 kb on + strand, within BACOVA_04792 at 145.565 kb on - strand, within BACOVA_04792 at 145.566 kb on + strand, within BACOVA_04792 at 145.566 kb on + strand, within BACOVA_04792 at 145.566 kb on + strand, within BACOVA_04792 at 145.567 kb on - strand, within BACOVA_04792 at 145.588 kb on + strand, within BACOVA_04792 at 145.590 kb on + strand, within BACOVA_04792 at 145.591 kb on - strand, within BACOVA_04792 at 145.594 kb on - strand, within BACOVA_04792 at 145.636 kb on - strand, within BACOVA_04792 at 145.648 kb on + strand, within BACOVA_04792 at 145.667 kb on + strand, within BACOVA_04792 at 145.668 kb on - strand, within BACOVA_04792 at 145.710 kb on + strand at 145.731 kb on + strand at 145.731 kb on + strand at 145.742 kb on + strand at 145.743 kb on - strand at 145.743 kb on - strand at 145.745 kb on - strand at 145.792 kb on - strand at 145.798 kb on + strand at 145.831 kb on + strand at 145.888 kb on + strand at 145.914 kb on + strand at 145.922 kb on + strand at 145.978 kb on + strand at 146.075 kb on + strand, within BACOVA_04793 at 146.082 kb on + strand, within BACOVA_04793 at 146.086 kb on + strand, within BACOVA_04793 at 146.117 kb on + strand, within BACOVA_04793 at 146.117 kb on + strand, within BACOVA_04793 at 146.164 kb on + strand, within BACOVA_04793 at 146.168 kb on + strand, within BACOVA_04793 at 146.208 kb on + strand, within BACOVA_04793 at 146.208 kb on + strand, within BACOVA_04793 at 146.212 kb on + strand, within BACOVA_04793 at 146.228 kb on + strand, within BACOVA_04793 at 146.275 kb on + strand, within BACOVA_04793 at 146.275 kb on + strand, within BACOVA_04793 at 146.351 kb on + strand, within BACOVA_04793 at 146.435 kb on + strand, within BACOVA_04793 at 146.456 kb on + strand, within BACOVA_04793 at 146.464 kb on + strand, within BACOVA_04793 at 146.477 kb on + strand, within BACOVA_04793 at 146.529 kb on + strand, within BACOVA_04793 at 146.612 kb on + strand, within BACOVA_04793 at 146.612 kb on + strand, within BACOVA_04793 at 146.667 kb on + strand, within BACOVA_04793 at 146.694 kb on + strand, within BACOVA_04793 at 146.714 kb on + strand, within BACOVA_04793
Per-strain Table
Position Strand Gene LocusTag Fraction Lentilan from mushroom 2.5 mg/ml (C) remove 143,600 + BACOVA_04791 0.71 +0.1 143,601 - BACOVA_04791 0.71 -0.3 143,601 - BACOVA_04791 0.71 -0.3 143,636 + BACOVA_04791 0.72 +0.6 143,636 + BACOVA_04791 0.72 -0.1 143,637 - BACOVA_04791 0.72 -1.5 143,677 + BACOVA_04791 0.74 +1.9 143,678 - BACOVA_04791 0.74 -0.6 143,683 + BACOVA_04791 0.74 -0.2 143,688 + BACOVA_04791 0.74 +0.1 143,721 + BACOVA_04791 0.75 -0.1 143,739 - BACOVA_04791 0.76 -1.0 143,739 - BACOVA_04791 0.76 -0.2 143,791 - BACOVA_04791 0.78 +0.5 143,795 + BACOVA_04791 0.78 -0.1 143,796 - BACOVA_04791 0.78 -0.5 143,801 - BACOVA_04791 0.78 +0.1 143,822 + BACOVA_04791 0.79 -0.4 143,832 + BACOVA_04791 0.79 -0.4 143,833 - BACOVA_04791 0.79 +0.8 143,874 + BACOVA_04791 0.81 +1.2 143,874 + BACOVA_04791 0.81 -0.3 143,874 + BACOVA_04791 0.81 -0.5 143,874 + BACOVA_04791 0.81 -1.5 143,874 + BACOVA_04791 0.81 -1.7 143,875 - BACOVA_04791 0.81 -0.2 143,875 - BACOVA_04791 0.81 +0.3 143,875 - BACOVA_04791 0.81 -0.7 143,875 - BACOVA_04791 0.81 +0.2 143,875 - BACOVA_04791 0.81 +0.3 143,885 + BACOVA_04791 0.81 -1.1 143,886 - BACOVA_04791 0.81 -0.5 143,890 + BACOVA_04791 0.82 +0.5 143,909 - BACOVA_04791 0.82 -0.1 143,964 + BACOVA_04791 0.84 -0.1 143,977 + BACOVA_04791 0.85 +0.1 143,978 - BACOVA_04791 0.85 +1.5 143,981 + BACOVA_04791 0.85 +0.0 143,988 + BACOVA_04791 0.85 -0.1 143,988 + BACOVA_04791 0.85 -3.2 143,989 - BACOVA_04791 0.85 -0.3 143,997 + BACOVA_04791 0.86 -0.9 143,997 + BACOVA_04791 0.86 +0.2 143,998 - BACOVA_04791 0.86 -0.9 144,021 - BACOVA_04791 0.86 +0.1 144,073 - BACOVA_04791 0.88 +0.3 144,096 + BACOVA_04791 0.89 -0.0 144,097 - BACOVA_04791 0.89 -0.2 144,125 + -1.5 144,176 - -0.2 144,236 + -0.0 144,236 + -0.4 144,237 - +1.1 144,237 - -0.7 144,237 - +0.1 144,240 + -1.6 144,257 + +0.4 144,258 - +0.5 144,282 + -0.5 144,292 + -1.2 144,294 + -0.6 144,294 + -1.9 144,295 - +0.3 144,300 + -0.4 144,301 - -0.1 144,303 + -0.8 144,304 - -1.3 144,305 + +0.1 144,358 - +0.5 144,359 + +0.1 144,360 - +0.3 144,388 + -2.6 144,389 - -1.1 144,389 - -0.5 144,389 - +0.1 144,417 - +0.8 144,417 - +0.7 144,420 + +2.4 144,421 - -0.8 144,423 + -0.5 144,424 - -0.3 144,460 + -1.1 144,461 - -0.5 144,470 + +1.2 144,470 + +0.2 144,477 - -0.4 144,480 + -0.8 144,485 + -0.5 144,521 - -1.6 144,525 + -0.6 144,526 - -0.4 144,534 - +0.9 144,546 + +1.3 144,547 - +0.1 144,562 + -1.3 144,562 + -0.4 144,563 - +0.6 144,563 - -0.1 144,564 + -0.3 144,587 - -0.0 144,625 + +0.3 144,625 + -0.6 144,625 + +0.3 144,625 + -0.7 144,625 + +0.4 144,625 + -0.6 144,626 - -0.0 144,626 - -0.1 144,626 - -0.2 144,626 - -0.4 144,629 + -0.7 144,629 + -0.6 144,629 + +0.5 144,629 + -0.2 144,629 + -1.1 144,630 - -0.2 144,630 - +0.2 144,630 - -0.4 144,631 + -1.7 144,649 + +0.4 144,649 + +0.4 144,651 + +0.3 144,651 + -0.2 144,652 - -0.3 144,652 - +1.1 144,658 + -0.5 144,658 + +0.3 144,707 + BACOVA_04792 0.14 -0.9 144,757 + BACOVA_04792 0.18 -0.9 144,770 - BACOVA_04792 0.19 -0.4 144,783 + BACOVA_04792 0.20 -0.8 144,807 - BACOVA_04792 0.22 -0.2 144,807 - BACOVA_04792 0.22 -0.4 144,810 + BACOVA_04792 0.22 +1.1 144,810 + BACOVA_04792 0.22 +0.0 144,810 + BACOVA_04792 0.22 -0.1 144,810 + BACOVA_04792 0.22 -1.4 144,895 - BACOVA_04792 0.29 -1.4 144,918 + BACOVA_04792 0.30 +0.6 144,918 + BACOVA_04792 0.30 +0.2 144,967 + BACOVA_04792 0.34 -0.1 144,967 + BACOVA_04792 0.34 +0.5 144,968 - BACOVA_04792 0.34 +0.4 144,990 + BACOVA_04792 0.36 +1.4 144,992 + BACOVA_04792 0.36 +0.2 145,008 + BACOVA_04792 0.38 -1.5 145,009 - BACOVA_04792 0.38 +0.7 145,074 + BACOVA_04792 0.43 +0.5 145,085 - BACOVA_04792 0.44 -0.2 145,123 + BACOVA_04792 0.47 +0.1 145,123 + BACOVA_04792 0.47 -0.7 145,124 - BACOVA_04792 0.47 -0.1 145,124 - BACOVA_04792 0.47 +0.1 145,147 - BACOVA_04792 0.49 -0.0 145,300 + BACOVA_04792 0.61 -0.4 145,301 - BACOVA_04792 0.61 -0.4 145,304 + BACOVA_04792 0.61 +1.1 145,304 + BACOVA_04792 0.61 +0.8 145,304 + BACOVA_04792 0.61 -0.2 145,304 + BACOVA_04792 0.61 -0.8 145,305 - BACOVA_04792 0.61 -0.4 145,305 - BACOVA_04792 0.61 -0.8 145,306 + BACOVA_04792 0.61 +1.1 145,306 + BACOVA_04792 0.61 -0.4 145,306 + BACOVA_04792 0.61 -0.8 145,306 + BACOVA_04792 0.61 -0.9 145,306 + BACOVA_04792 0.61 -1.9 145,307 - BACOVA_04792 0.61 -0.4 145,307 - BACOVA_04792 0.61 -0.7 145,307 - BACOVA_04792 0.61 +0.1 145,308 + BACOVA_04792 0.61 -0.8 145,308 + BACOVA_04792 0.61 -0.3 145,308 + BACOVA_04792 0.61 -0.4 145,308 + BACOVA_04792 0.61 +1.0 145,309 - BACOVA_04792 0.61 -0.1 145,309 - BACOVA_04792 0.61 +0.7 145,309 - BACOVA_04792 0.61 -0.7 145,325 - BACOVA_04792 0.63 -0.4 145,355 - BACOVA_04792 0.65 +0.0 145,368 + BACOVA_04792 0.66 -0.2 145,374 + BACOVA_04792 0.67 +0.8 145,403 - BACOVA_04792 0.69 +0.3 145,405 - BACOVA_04792 0.69 -0.5 145,405 - BACOVA_04792 0.69 -0.2 145,408 - BACOVA_04792 0.69 +1.1 145,408 - BACOVA_04792 0.69 +0.6 145,417 + BACOVA_04792 0.70 +0.5 145,418 - BACOVA_04792 0.70 -0.6 145,426 - BACOVA_04792 0.71 -0.4 145,445 - BACOVA_04792 0.72 -0.9 145,454 - BACOVA_04792 0.73 +0.4 145,454 - BACOVA_04792 0.73 +0.6 145,462 - BACOVA_04792 0.73 -0.3 145,462 - BACOVA_04792 0.73 +0.6 145,462 - BACOVA_04792 0.73 -0.1 145,465 - BACOVA_04792 0.74 -0.5 145,465 - BACOVA_04792 0.74 +0.7 145,465 - BACOVA_04792 0.74 +0.2 145,473 + BACOVA_04792 0.74 -1.7 145,473 + BACOVA_04792 0.74 +0.8 145,487 + BACOVA_04792 0.75 -0.1 145,488 - BACOVA_04792 0.76 -0.2 145,510 + BACOVA_04792 0.77 -0.1 145,511 - BACOVA_04792 0.77 +1.2 145,546 + BACOVA_04792 0.80 -0.6 145,565 - BACOVA_04792 0.82 -0.4 145,566 + BACOVA_04792 0.82 -0.6 145,566 + BACOVA_04792 0.82 -0.5 145,566 + BACOVA_04792 0.82 +0.1 145,567 - BACOVA_04792 0.82 -0.5 145,588 + BACOVA_04792 0.83 -0.6 145,590 + BACOVA_04792 0.84 -0.0 145,591 - BACOVA_04792 0.84 -2.3 145,594 - BACOVA_04792 0.84 +0.7 145,636 - BACOVA_04792 0.87 +0.2 145,648 + BACOVA_04792 0.88 -0.2 145,667 + BACOVA_04792 0.90 -1.9 145,668 - BACOVA_04792 0.90 +0.5 145,710 + +0.3 145,731 + -0.1 145,731 + +0.3 145,742 + -0.5 145,743 - -0.6 145,743 - -1.3 145,745 - -0.3 145,792 - -0.7 145,798 + +0.1 145,831 + +0.1 145,888 + -0.4 145,914 + +0.1 145,922 + -0.0 145,978 + +1.1 146,075 + BACOVA_04793 0.12 +0.0 146,082 + BACOVA_04793 0.13 -1.1 146,086 + BACOVA_04793 0.13 +0.3 146,117 + BACOVA_04793 0.14 +0.1 146,117 + BACOVA_04793 0.14 +0.6 146,164 + BACOVA_04793 0.16 +0.9 146,168 + BACOVA_04793 0.17 +0.8 146,208 + BACOVA_04793 0.18 +0.4 146,208 + BACOVA_04793 0.18 +0.9 146,212 + BACOVA_04793 0.18 +0.1 146,228 + BACOVA_04793 0.19 -0.4 146,275 + BACOVA_04793 0.21 -0.3 146,275 + BACOVA_04793 0.21 -0.2 146,351 + BACOVA_04793 0.24 +0.1 146,435 + BACOVA_04793 0.28 +1.4 146,456 + BACOVA_04793 0.29 -0.4 146,464 + BACOVA_04793 0.29 +0.4 146,477 + BACOVA_04793 0.30 -0.8 146,529 + BACOVA_04793 0.32 -0.4 146,612 + BACOVA_04793 0.36 +1.1 146,612 + BACOVA_04793 0.36 -0.5 146,667 + BACOVA_04793 0.38 +0.5 146,694 + BACOVA_04793 0.39 -0.5 146,714 + BACOVA_04793 0.40 -0.2
Or see this region's nucleotide sequence