Experiment: Lentilan from mushroom 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03846 and BACOVA_03847 are separated by 47 nucleotides BACOVA_03847 and BACOVA_03848 are separated by 106 nucleotides BACOVA_03848 and BACOVA_03849 are separated by 177 nucleotides
BACOVA_03846: BACOVA_03846 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 193,749 to 196,727
_03846
BACOVA_03847: BACOVA_03847 - Na+/H+ antiporter family protein, at 196,775 to 198,076
_03847
BACOVA_03848: BACOVA_03848 - ribosomal protein S16, at 198,183 to 198,737
_03848
BACOVA_03849: BACOVA_03849 - transcriptional regulator, GntR family, at 198,915 to 199,910
_03849
Position (kb) 196
197
198
199 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 195.776 kb on + strand, within BACOVA_03846 at 195.777 kb on - strand, within BACOVA_03846 at 195.777 kb on - strand, within BACOVA_03846 at 195.785 kb on - strand, within BACOVA_03846 at 195.785 kb on - strand, within BACOVA_03846 at 195.794 kb on - strand, within BACOVA_03846 at 195.859 kb on + strand, within BACOVA_03846 at 195.887 kb on - strand, within BACOVA_03846 at 195.898 kb on + strand, within BACOVA_03846 at 195.931 kb on + strand, within BACOVA_03846 at 195.932 kb on - strand, within BACOVA_03846 at 196.009 kb on + strand, within BACOVA_03846 at 196.080 kb on + strand, within BACOVA_03846 at 196.161 kb on - strand, within BACOVA_03846 at 196.193 kb on + strand, within BACOVA_03846 at 196.194 kb on - strand, within BACOVA_03846 at 196.226 kb on + strand, within BACOVA_03846 at 196.238 kb on - strand, within BACOVA_03846 at 196.285 kb on - strand, within BACOVA_03846 at 196.286 kb on + strand, within BACOVA_03846 at 196.286 kb on + strand, within BACOVA_03846 at 196.287 kb on - strand, within BACOVA_03846 at 196.287 kb on - strand, within BACOVA_03846 at 196.287 kb on - strand, within BACOVA_03846 at 196.298 kb on - strand, within BACOVA_03846 at 196.304 kb on - strand, within BACOVA_03846 at 196.343 kb on + strand, within BACOVA_03846 at 196.344 kb on - strand, within BACOVA_03846 at 196.415 kb on - strand, within BACOVA_03846 at 196.429 kb on - strand, within BACOVA_03846 at 196.435 kb on + strand at 196.482 kb on + strand at 196.483 kb on - strand at 196.484 kb on + strand at 196.484 kb on + strand at 196.497 kb on - strand at 196.497 kb on - strand at 196.497 kb on - strand at 196.498 kb on + strand at 196.498 kb on + strand at 196.499 kb on - strand at 196.514 kb on + strand at 196.515 kb on - strand at 196.545 kb on - strand at 196.561 kb on - strand at 196.573 kb on + strand at 196.577 kb on + strand at 196.578 kb on - strand at 196.580 kb on + strand at 196.590 kb on - strand at 196.648 kb on - strand at 196.648 kb on - strand at 196.649 kb on + strand at 196.650 kb on - strand at 196.650 kb on - strand at 196.650 kb on - strand at 196.650 kb on - strand at 196.661 kb on + strand at 196.662 kb on - strand at 196.716 kb on - strand at 196.761 kb on + strand at 196.761 kb on + strand at 196.761 kb on + strand at 196.765 kb on + strand at 196.774 kb on + strand at 196.795 kb on + strand at 196.796 kb on - strand at 196.825 kb on - strand at 196.845 kb on + strand at 196.845 kb on + strand at 196.886 kb on + strand at 196.887 kb on - strand at 196.940 kb on - strand, within BACOVA_03847 at 196.942 kb on + strand, within BACOVA_03847 at 196.942 kb on + strand, within BACOVA_03847 at 196.959 kb on + strand, within BACOVA_03847 at 196.973 kb on + strand, within BACOVA_03847 at 196.974 kb on - strand, within BACOVA_03847 at 196.974 kb on - strand, within BACOVA_03847 at 197.020 kb on - strand, within BACOVA_03847 at 197.025 kb on + strand, within BACOVA_03847 at 197.026 kb on - strand, within BACOVA_03847 at 197.104 kb on + strand, within BACOVA_03847 at 197.105 kb on - strand, within BACOVA_03847 at 197.238 kb on + strand, within BACOVA_03847 at 197.256 kb on + strand, within BACOVA_03847 at 197.257 kb on - strand, within BACOVA_03847 at 197.266 kb on - strand, within BACOVA_03847 at 197.269 kb on - strand, within BACOVA_03847 at 197.347 kb on - strand, within BACOVA_03847 at 197.375 kb on - strand, within BACOVA_03847 at 197.415 kb on - strand, within BACOVA_03847 at 197.480 kb on - strand, within BACOVA_03847 at 197.481 kb on + strand, within BACOVA_03847 at 197.487 kb on - strand, within BACOVA_03847 at 197.491 kb on - strand, within BACOVA_03847 at 197.497 kb on - strand, within BACOVA_03847 at 197.499 kb on + strand, within BACOVA_03847 at 197.499 kb on + strand, within BACOVA_03847 at 197.500 kb on - strand, within BACOVA_03847 at 197.541 kb on + strand, within BACOVA_03847 at 197.542 kb on - strand, within BACOVA_03847 at 197.545 kb on - strand, within BACOVA_03847 at 197.548 kb on + strand, within BACOVA_03847 at 197.548 kb on + strand, within BACOVA_03847 at 197.551 kb on - strand, within BACOVA_03847 at 197.650 kb on + strand, within BACOVA_03847 at 197.650 kb on + strand, within BACOVA_03847 at 197.650 kb on + strand, within BACOVA_03847 at 197.651 kb on - strand, within BACOVA_03847 at 197.651 kb on - strand, within BACOVA_03847 at 197.651 kb on - strand, within BACOVA_03847 at 197.662 kb on - strand, within BACOVA_03847 at 197.786 kb on - strand, within BACOVA_03847 at 197.796 kb on + strand, within BACOVA_03847 at 197.801 kb on - strand, within BACOVA_03847 at 197.801 kb on - strand, within BACOVA_03847 at 197.826 kb on + strand, within BACOVA_03847 at 197.826 kb on + strand, within BACOVA_03847 at 197.827 kb on - strand, within BACOVA_03847 at 197.866 kb on - strand, within BACOVA_03847 at 197.893 kb on + strand, within BACOVA_03847 at 197.903 kb on - strand, within BACOVA_03847 at 197.919 kb on + strand, within BACOVA_03847 at 197.974 kb on + strand at 198.017 kb on - strand at 198.774 kb on + strand at 199.060 kb on - strand, within BACOVA_03849 at 199.067 kb on - strand, within BACOVA_03849
Per-strain Table
Position Strand Gene LocusTag Fraction Lentilan from mushroom 2.5 mg/ml (C) remove 195,776 + BACOVA_03846 0.68 -0.8 195,777 - BACOVA_03846 0.68 -3.6 195,777 - BACOVA_03846 0.68 -2.2 195,785 - BACOVA_03846 0.68 -2.6 195,785 - BACOVA_03846 0.68 -3.3 195,794 - BACOVA_03846 0.69 -2.8 195,859 + BACOVA_03846 0.71 -0.5 195,887 - BACOVA_03846 0.72 -2.7 195,898 + BACOVA_03846 0.72 +0.4 195,931 + BACOVA_03846 0.73 +0.4 195,932 - BACOVA_03846 0.73 -2.3 196,009 + BACOVA_03846 0.76 +0.1 196,080 + BACOVA_03846 0.78 -0.4 196,161 - BACOVA_03846 0.81 -2.6 196,193 + BACOVA_03846 0.82 +0.5 196,194 - BACOVA_03846 0.82 -2.3 196,226 + BACOVA_03846 0.83 +0.6 196,238 - BACOVA_03846 0.84 -0.7 196,285 - BACOVA_03846 0.85 -4.0 196,286 + BACOVA_03846 0.85 +1.3 196,286 + BACOVA_03846 0.85 -0.2 196,287 - BACOVA_03846 0.85 -2.6 196,287 - BACOVA_03846 0.85 -4.1 196,287 - BACOVA_03846 0.85 -2.7 196,298 - BACOVA_03846 0.86 -1.4 196,304 - BACOVA_03846 0.86 -1.4 196,343 + BACOVA_03846 0.87 +1.1 196,344 - BACOVA_03846 0.87 -2.4 196,415 - BACOVA_03846 0.89 -3.1 196,429 - BACOVA_03846 0.90 -1.7 196,435 + +0.3 196,482 + -0.4 196,483 - -2.9 196,484 + +1.3 196,484 + +1.1 196,497 - -1.4 196,497 - -1.1 196,497 - -1.1 196,498 + -0.5 196,498 + +0.7 196,499 - -2.3 196,514 + +0.0 196,515 - -3.1 196,545 - -1.4 196,561 - -2.3 196,573 + +1.5 196,577 + -0.9 196,578 - -4.9 196,580 + -0.1 196,590 - -1.7 196,648 - -2.9 196,648 - -1.9 196,649 + +1.4 196,650 - -3.2 196,650 - -4.0 196,650 - -0.9 196,650 - -3.3 196,661 + +0.6 196,662 - -3.5 196,716 - -3.8 196,761 + +0.3 196,761 + +0.4 196,761 + +0.3 196,765 + +0.3 196,774 + -1.6 196,795 + -2.0 196,796 - -5.2 196,825 - -3.4 196,845 + -2.7 196,845 + -3.2 196,886 + -2.6 196,887 - -3.0 196,940 - BACOVA_03847 0.13 -1.1 196,942 + BACOVA_03847 0.13 -1.9 196,942 + BACOVA_03847 0.13 -2.4 196,959 + BACOVA_03847 0.14 -1.7 196,973 + BACOVA_03847 0.15 -0.7 196,974 - BACOVA_03847 0.15 -3.4 196,974 - BACOVA_03847 0.15 -4.6 197,020 - BACOVA_03847 0.19 -3.1 197,025 + BACOVA_03847 0.19 -1.7 197,026 - BACOVA_03847 0.19 -0.1 197,104 + BACOVA_03847 0.25 -3.3 197,105 - BACOVA_03847 0.25 -1.7 197,238 + BACOVA_03847 0.36 -3.4 197,256 + BACOVA_03847 0.37 -3.5 197,257 - BACOVA_03847 0.37 +0.9 197,266 - BACOVA_03847 0.38 -1.1 197,269 - BACOVA_03847 0.38 -4.1 197,347 - BACOVA_03847 0.44 -1.1 197,375 - BACOVA_03847 0.46 -3.0 197,415 - BACOVA_03847 0.49 -2.6 197,480 - BACOVA_03847 0.54 -4.3 197,481 + BACOVA_03847 0.54 -2.8 197,487 - BACOVA_03847 0.55 -3.1 197,491 - BACOVA_03847 0.55 -2.5 197,497 - BACOVA_03847 0.55 -1.3 197,499 + BACOVA_03847 0.56 -0.1 197,499 + BACOVA_03847 0.56 -2.3 197,500 - BACOVA_03847 0.56 -1.4 197,541 + BACOVA_03847 0.59 -1.8 197,542 - BACOVA_03847 0.59 -0.1 197,545 - BACOVA_03847 0.59 -3.9 197,548 + BACOVA_03847 0.59 -2.9 197,548 + BACOVA_03847 0.59 -2.3 197,551 - BACOVA_03847 0.60 -4.2 197,650 + BACOVA_03847 0.67 -2.1 197,650 + BACOVA_03847 0.67 -2.9 197,650 + BACOVA_03847 0.67 -2.8 197,651 - BACOVA_03847 0.67 -3.1 197,651 - BACOVA_03847 0.67 -2.9 197,651 - BACOVA_03847 0.67 -1.4 197,662 - BACOVA_03847 0.68 -0.7 197,786 - BACOVA_03847 0.78 -3.4 197,796 + BACOVA_03847 0.78 -0.7 197,801 - BACOVA_03847 0.79 -1.7 197,801 - BACOVA_03847 0.79 -3.9 197,826 + BACOVA_03847 0.81 -2.3 197,826 + BACOVA_03847 0.81 -2.8 197,827 - BACOVA_03847 0.81 -2.7 197,866 - BACOVA_03847 0.84 -3.8 197,893 + BACOVA_03847 0.86 -1.1 197,903 - BACOVA_03847 0.87 -4.7 197,919 + BACOVA_03847 0.88 -3.7 197,974 + -4.7 198,017 - -3.1 198,774 + +0.6 199,060 - BACOVA_03849 0.15 -0.1 199,067 - BACOVA_03849 0.15 -0.8
Or see this region's nucleotide sequence