Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02308

Experiment: Lentilan from mushroom 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_02307 and BACOVA_02308 are separated by 6 nucleotidesBACOVA_02308 and BACOVA_02309 are separated by 67 nucleotidesBACOVA_02309 and BACOVA_02310 are separated by 12 nucleotidesBACOVA_02310 and BACOVA_02312 are separated by 23 nucleotides BACOVA_02307: BACOVA_02307 - hypothetical protein, at 74,468 to 76,777 _02307 BACOVA_02308: BACOVA_02308 - protein TraX, at 76,784 to 77,491 _02308 BACOVA_02309: BACOVA_02309 - DNA-binding helix-turn-helix protein, at 77,559 to 77,843 _02309 BACOVA_02310: BACOVA_02310 - hypothetical protein, at 77,856 to 78,038 _02310 BACOVA_02312: BACOVA_02312 - hypothetical protein, at 78,062 to 78,805 _02312 Position (kb) 76 77 78Strain fitness (log2 ratio) -2 -1 0 1 2at 75.818 kb on + strand, within BACOVA_02307at 76.111 kb on - strand, within BACOVA_02307at 76.176 kb on - strand, within BACOVA_02307at 76.189 kb on - strand, within BACOVA_02307at 76.189 kb on - strand, within BACOVA_02307at 76.189 kb on - strand, within BACOVA_02307at 76.198 kb on + strand, within BACOVA_02307at 76.272 kb on - strand, within BACOVA_02307at 76.296 kb on + strand, within BACOVA_02307at 76.297 kb on - strand, within BACOVA_02307at 76.297 kb on - strand, within BACOVA_02307at 76.315 kb on + strand, within BACOVA_02307at 76.437 kb on + strand, within BACOVA_02307at 76.563 kb on + strandat 76.564 kb on - strandat 76.630 kb on - strandat 76.649 kb on + strandat 76.671 kb on - strandat 76.778 kb on + strandat 76.778 kb on + strandat 76.778 kb on + strandat 76.778 kb on + strandat 76.779 kb on - strandat 76.783 kb on + strandat 76.798 kb on + strandat 76.804 kb on - strandat 76.804 kb on - strandat 77.083 kb on + strand, within BACOVA_02308at 77.145 kb on + strand, within BACOVA_02308at 77.182 kb on - strand, within BACOVA_02308at 77.182 kb on - strand, within BACOVA_02308at 77.187 kb on + strand, within BACOVA_02308at 77.209 kb on - strand, within BACOVA_02308at 77.235 kb on + strand, within BACOVA_02308at 77.236 kb on - strand, within BACOVA_02308at 77.244 kb on + strand, within BACOVA_02308at 77.245 kb on - strand, within BACOVA_02308at 77.255 kb on + strand, within BACOVA_02308at 77.256 kb on - strand, within BACOVA_02308at 77.279 kb on + strand, within BACOVA_02308at 77.280 kb on - strand, within BACOVA_02308at 77.296 kb on + strand, within BACOVA_02308at 77.332 kb on - strand, within BACOVA_02308at 77.369 kb on - strand, within BACOVA_02308at 77.382 kb on + strand, within BACOVA_02308at 77.383 kb on - strand, within BACOVA_02308at 77.384 kb on + strand, within BACOVA_02308at 77.407 kb on - strand, within BACOVA_02308at 77.413 kb on + strand, within BACOVA_02308at 77.413 kb on + strand, within BACOVA_02308at 77.459 kb on - strandat 77.497 kb on + strandat 77.498 kb on - strandat 77.507 kb on - strandat 77.507 kb on - strandat 77.520 kb on - strandat 77.586 kb on + strandat 77.607 kb on - strand, within BACOVA_02309at 77.665 kb on + strand, within BACOVA_02309at 77.666 kb on - strand, within BACOVA_02309at 77.744 kb on + strand, within BACOVA_02309at 77.744 kb on + strand, within BACOVA_02309at 77.744 kb on + strand, within BACOVA_02309at 77.744 kb on + strand, within BACOVA_02309at 77.836 kb on - strandat 77.880 kb on + strand, within BACOVA_02310at 77.882 kb on + strand, within BACOVA_02310at 78.000 kb on - strand, within BACOVA_02310at 78.009 kb on + strand, within BACOVA_02310at 78.122 kb on + strandat 78.124 kb on + strandat 78.125 kb on - strandat 78.130 kb on - strandat 78.144 kb on + strand, within BACOVA_02312at 78.145 kb on - strand, within BACOVA_02312at 78.145 kb on - strand, within BACOVA_02312at 78.145 kb on - strand, within BACOVA_02312at 78.145 kb on - strand, within BACOVA_02312at 78.145 kb on - strand, within BACOVA_02312at 78.148 kb on + strand, within BACOVA_02312at 78.148 kb on + strand, within BACOVA_02312at 78.155 kb on + strand, within BACOVA_02312at 78.155 kb on + strand, within BACOVA_02312at 78.156 kb on - strand, within BACOVA_02312at 78.156 kb on - strand, within BACOVA_02312at 78.156 kb on - strand, within BACOVA_02312at 78.189 kb on + strand, within BACOVA_02312at 78.213 kb on + strand, within BACOVA_02312at 78.213 kb on + strand, within BACOVA_02312at 78.213 kb on + strand, within BACOVA_02312at 78.214 kb on - strand, within BACOVA_02312at 78.233 kb on + strand, within BACOVA_02312at 78.234 kb on - strand, within BACOVA_02312at 78.234 kb on - strand, within BACOVA_02312at 78.234 kb on - strand, within BACOVA_02312at 78.282 kb on + strand, within BACOVA_02312at 78.282 kb on + strand, within BACOVA_02312at 78.283 kb on - strand, within BACOVA_02312at 78.287 kb on - strand, within BACOVA_02312at 78.287 kb on - strand, within BACOVA_02312at 78.292 kb on + strand, within BACOVA_02312at 78.331 kb on + strand, within BACOVA_02312at 78.335 kb on + strand, within BACOVA_02312at 78.373 kb on + strand, within BACOVA_02312at 78.384 kb on - strand, within BACOVA_02312at 78.418 kb on + strand, within BACOVA_02312at 78.428 kb on + strand, within BACOVA_02312at 78.491 kb on - strand, within BACOVA_02312

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Lentilan from mushroom 2.5 mg/ml (C)
remove
75,818 + BACOVA_02307 0.58 +1.2
76,111 - BACOVA_02307 0.71 -0.4
76,176 - BACOVA_02307 0.74 +0.8
76,189 - BACOVA_02307 0.75 -0.1
76,189 - BACOVA_02307 0.75 -0.0
76,189 - BACOVA_02307 0.75 +0.2
76,198 + BACOVA_02307 0.75 +1.2
76,272 - BACOVA_02307 0.78 +0.2
76,296 + BACOVA_02307 0.79 +0.4
76,297 - BACOVA_02307 0.79 -0.2
76,297 - BACOVA_02307 0.79 -1.3
76,315 + BACOVA_02307 0.80 +0.2
76,437 + BACOVA_02307 0.85 -0.8
76,563 + +0.4
76,564 - -1.3
76,630 - -0.2
76,649 + +0.2
76,671 - -0.4
76,778 + +1.1
76,778 + -2.0
76,778 + +0.7
76,778 + +0.3
76,779 - +0.8
76,783 + +0.8
76,798 + +0.3
76,804 - -0.8
76,804 - -0.4
77,083 + BACOVA_02308 0.42 +0.1
77,145 + BACOVA_02308 0.51 -0.2
77,182 - BACOVA_02308 0.56 -1.1
77,182 - BACOVA_02308 0.56 -0.4
77,187 + BACOVA_02308 0.57 -0.7
77,209 - BACOVA_02308 0.60 +0.4
77,235 + BACOVA_02308 0.64 +1.1
77,236 - BACOVA_02308 0.64 -0.4
77,244 + BACOVA_02308 0.65 -0.5
77,245 - BACOVA_02308 0.65 -0.6
77,255 + BACOVA_02308 0.67 -0.3
77,256 - BACOVA_02308 0.67 -0.8
77,279 + BACOVA_02308 0.70 -0.1
77,280 - BACOVA_02308 0.70 -1.4
77,296 + BACOVA_02308 0.72 -0.4
77,332 - BACOVA_02308 0.77 +1.2
77,369 - BACOVA_02308 0.83 +0.2
77,382 + BACOVA_02308 0.84 -0.8
77,383 - BACOVA_02308 0.85 -0.4
77,384 + BACOVA_02308 0.85 +1.6
77,407 - BACOVA_02308 0.88 +0.1
77,413 + BACOVA_02308 0.89 +0.2
77,413 + BACOVA_02308 0.89 +0.1
77,459 - +0.0
77,497 + +0.3
77,498 - +0.8
77,507 - +1.6
77,507 - +0.2
77,520 - +0.1
77,586 + +0.8
77,607 - BACOVA_02309 0.17 -0.4
77,665 + BACOVA_02309 0.37 +0.5
77,666 - BACOVA_02309 0.38 +0.8
77,744 + BACOVA_02309 0.65 +0.8
77,744 + BACOVA_02309 0.65 +0.2
77,744 + BACOVA_02309 0.65 +0.4
77,744 + BACOVA_02309 0.65 -0.0
77,836 - -0.2
77,880 + BACOVA_02310 0.13 -0.3
77,882 + BACOVA_02310 0.14 -0.0
78,000 - BACOVA_02310 0.79 +0.2
78,009 + BACOVA_02310 0.84 -1.2
78,122 + -0.5
78,124 + +0.3
78,125 - -0.6
78,130 - -1.0
78,144 + BACOVA_02312 0.11 +1.3
78,145 - BACOVA_02312 0.11 +0.7
78,145 - BACOVA_02312 0.11 +0.2
78,145 - BACOVA_02312 0.11 -0.8
78,145 - BACOVA_02312 0.11 -0.8
78,145 - BACOVA_02312 0.11 +0.7
78,148 + BACOVA_02312 0.12 -0.2
78,148 + BACOVA_02312 0.12 +0.4
78,155 + BACOVA_02312 0.12 +0.4
78,155 + BACOVA_02312 0.12 +2.4
78,156 - BACOVA_02312 0.13 +1.8
78,156 - BACOVA_02312 0.13 +0.1
78,156 - BACOVA_02312 0.13 -0.1
78,189 + BACOVA_02312 0.17 -0.4
78,213 + BACOVA_02312 0.20 -0.1
78,213 + BACOVA_02312 0.20 +0.1
78,213 + BACOVA_02312 0.20 -0.9
78,214 - BACOVA_02312 0.20 -0.2
78,233 + BACOVA_02312 0.23 +0.8
78,234 - BACOVA_02312 0.23 -0.2
78,234 - BACOVA_02312 0.23 -0.0
78,234 - BACOVA_02312 0.23 +0.8
78,282 + BACOVA_02312 0.30 +0.9
78,282 + BACOVA_02312 0.30 +0.8
78,283 - BACOVA_02312 0.30 -0.8
78,287 - BACOVA_02312 0.30 -1.2
78,287 - BACOVA_02312 0.30 -0.1
78,292 + BACOVA_02312 0.31 +1.7
78,331 + BACOVA_02312 0.36 +0.3
78,335 + BACOVA_02312 0.37 -2.4
78,373 + BACOVA_02312 0.42 -0.2
78,384 - BACOVA_02312 0.43 -1.0
78,418 + BACOVA_02312 0.48 -0.7
78,428 + BACOVA_02312 0.49 -0.2
78,491 - BACOVA_02312 0.58 +0.1

Or see this region's nucleotide sequence