Experiment: Lentilan from mushroom 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00540 and BACOVA_00541 are separated by 126 nucleotides BACOVA_00541 and BACOVA_00542 are separated by 143 nucleotides BACOVA_00542 and BACOVA_00543 are separated by 17 nucleotides
BACOVA_00540: BACOVA_00540 - hypothetical protein, at 37,694 to 40,675
_00540
BACOVA_00541: BACOVA_00541 - hypothetical protein, at 40,802 to 40,903
_00541
BACOVA_00542: BACOVA_00542 - N-acetylmuramoyl-L-alanine amidase, at 41,047 to 41,547
_00542
BACOVA_00543: BACOVA_00543 - putative DNA-binding protein, at 41,565 to 42,080
_00543
Position (kb) 40
41 Strain fitness (log2 ratio) -1
0
1
2 at 39.813 kb on + strand, within BACOVA_00540 at 39.855 kb on + strand, within BACOVA_00540 at 39.856 kb on - strand, within BACOVA_00540 at 39.913 kb on + strand, within BACOVA_00540 at 39.979 kb on + strand, within BACOVA_00540 at 39.979 kb on + strand, within BACOVA_00540 at 39.988 kb on + strand, within BACOVA_00540 at 40.242 kb on + strand, within BACOVA_00540 at 40.251 kb on + strand, within BACOVA_00540 at 40.251 kb on + strand, within BACOVA_00540 at 40.276 kb on + strand, within BACOVA_00540 at 40.300 kb on - strand, within BACOVA_00540 at 40.320 kb on + strand, within BACOVA_00540 at 40.320 kb on + strand, within BACOVA_00540 at 40.321 kb on - strand, within BACOVA_00540 at 40.321 kb on - strand, within BACOVA_00540 at 40.321 kb on - strand, within BACOVA_00540 at 40.321 kb on - strand, within BACOVA_00540 at 40.341 kb on + strand, within BACOVA_00540 at 40.373 kb on + strand, within BACOVA_00540 at 40.452 kb on + strand at 40.452 kb on + strand at 40.497 kb on + strand at 40.497 kb on + strand at 40.498 kb on - strand at 40.498 kb on - strand at 40.498 kb on - strand at 40.500 kb on - strand at 40.501 kb on + strand at 40.502 kb on - strand at 40.554 kb on + strand at 40.576 kb on + strand at 40.576 kb on + strand at 40.617 kb on + strand at 40.621 kb on + strand at 40.621 kb on + strand at 40.621 kb on + strand at 40.622 kb on - strand at 40.624 kb on + strand at 40.624 kb on + strand at 40.634 kb on + strand at 40.661 kb on - strand at 40.661 kb on - strand at 40.661 kb on - strand at 40.664 kb on + strand at 40.678 kb on - strand at 40.777 kb on + strand at 40.778 kb on - strand at 40.960 kb on + strand at 40.964 kb on + strand at 40.970 kb on + strand at 41.158 kb on + strand, within BACOVA_00542 at 41.298 kb on + strand, within BACOVA_00542 at 41.387 kb on + strand, within BACOVA_00542 at 41.390 kb on + strand, within BACOVA_00542 at 41.514 kb on + strand at 41.514 kb on + strand at 41.566 kb on + strand at 41.789 kb on + strand, within BACOVA_00543
Per-strain Table
Position Strand Gene LocusTag Fraction Lentilan from mushroom 2.5 mg/ml (C) remove 39,813 + BACOVA_00540 0.71 +1.9 39,855 + BACOVA_00540 0.72 -0.0 39,856 - BACOVA_00540 0.73 +0.1 39,913 + BACOVA_00540 0.74 -0.2 39,979 + BACOVA_00540 0.77 -0.9 39,979 + BACOVA_00540 0.77 +0.1 39,988 + BACOVA_00540 0.77 -0.9 40,242 + BACOVA_00540 0.85 -0.1 40,251 + BACOVA_00540 0.86 -0.5 40,251 + BACOVA_00540 0.86 -1.1 40,276 + BACOVA_00540 0.87 +0.6 40,300 - BACOVA_00540 0.87 +0.2 40,320 + BACOVA_00540 0.88 -0.6 40,320 + BACOVA_00540 0.88 -0.1 40,321 - BACOVA_00540 0.88 +0.2 40,321 - BACOVA_00540 0.88 -0.6 40,321 - BACOVA_00540 0.88 -0.7 40,321 - BACOVA_00540 0.88 -0.6 40,341 + BACOVA_00540 0.89 +2.3 40,373 + BACOVA_00540 0.90 -0.1 40,452 + +0.9 40,452 + -0.3 40,497 + -0.5 40,497 + -0.3 40,498 - +0.9 40,498 - +1.4 40,498 - -0.6 40,500 - -0.8 40,501 + +0.7 40,502 - +0.6 40,554 + +0.1 40,576 + +0.9 40,576 + +0.3 40,617 + +0.1 40,621 + +1.3 40,621 + +0.9 40,621 + -1.1 40,622 - +0.9 40,624 + -0.9 40,624 + +0.7 40,634 + +0.3 40,661 - +0.2 40,661 - -1.2 40,661 - +0.4 40,664 + -0.2 40,678 - +0.6 40,777 + +1.5 40,778 - -0.6 40,960 + +0.1 40,964 + -0.2 40,970 + +2.1 41,158 + BACOVA_00542 0.22 -0.5 41,298 + BACOVA_00542 0.50 -0.1 41,387 + BACOVA_00542 0.68 -1.4 41,390 + BACOVA_00542 0.68 -0.1 41,514 + +1.2 41,514 + -0.2 41,566 + +0.5 41,789 + BACOVA_00543 0.43 -0.1
Or see this region's nucleotide sequence