Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05471

Experiment: Xylan from corncob 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05470 and BACOVA_05471 are separated by 31 nucleotidesBACOVA_05471 and BACOVA_05472 are separated by 67 nucleotides BACOVA_05470: BACOVA_05470 - ROK family protein, at 960,682 to 961,623 _05470 BACOVA_05471: BACOVA_05471 - Tat pathway signal sequence domain protein, at 961,655 to 963,283 _05471 BACOVA_05472: BACOVA_05472 - arylsulfatase, at 963,351 to 964,967 _05472 Position (kb) 961 962 963 964Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 960.658 kb on - strandat 960.754 kb on - strandat 960.779 kb on + strand, within BACOVA_05470at 960.779 kb on + strand, within BACOVA_05470at 960.780 kb on - strand, within BACOVA_05470at 960.780 kb on - strand, within BACOVA_05470at 960.812 kb on + strand, within BACOVA_05470at 960.812 kb on + strand, within BACOVA_05470at 960.812 kb on + strand, within BACOVA_05470at 960.812 kb on + strand, within BACOVA_05470at 960.870 kb on + strand, within BACOVA_05470at 960.871 kb on - strand, within BACOVA_05470at 960.874 kb on - strand, within BACOVA_05470at 960.939 kb on + strand, within BACOVA_05470at 960.978 kb on + strand, within BACOVA_05470at 961.003 kb on - strand, within BACOVA_05470at 961.037 kb on - strand, within BACOVA_05470at 961.058 kb on + strand, within BACOVA_05470at 961.058 kb on + strand, within BACOVA_05470at 961.059 kb on - strand, within BACOVA_05470at 961.059 kb on - strand, within BACOVA_05470at 961.202 kb on - strand, within BACOVA_05470at 961.208 kb on - strand, within BACOVA_05470at 961.244 kb on + strand, within BACOVA_05470at 961.244 kb on + strand, within BACOVA_05470at 961.244 kb on + strand, within BACOVA_05470at 961.333 kb on + strand, within BACOVA_05470at 961.334 kb on - strand, within BACOVA_05470at 961.334 kb on - strand, within BACOVA_05470at 961.394 kb on - strand, within BACOVA_05470at 961.407 kb on + strand, within BACOVA_05470at 961.407 kb on + strand, within BACOVA_05470at 961.408 kb on - strand, within BACOVA_05470at 961.417 kb on + strand, within BACOVA_05470at 961.417 kb on + strand, within BACOVA_05470at 961.420 kb on - strand, within BACOVA_05470at 961.471 kb on - strand, within BACOVA_05470at 961.565 kb on - strandat 961.577 kb on - strandat 961.603 kb on + strandat 961.610 kb on + strandat 961.610 kb on + strandat 961.633 kb on + strandat 961.634 kb on - strandat 961.636 kb on + strandat 961.636 kb on + strandat 961.636 kb on + strandat 961.640 kb on + strandat 961.640 kb on + strandat 961.640 kb on + strandat 961.643 kb on + strandat 961.643 kb on + strandat 961.644 kb on - strandat 961.718 kb on + strandat 961.718 kb on + strandat 961.718 kb on + strandat 961.722 kb on + strandat 961.722 kb on + strandat 961.723 kb on - strandat 961.726 kb on - strandat 961.728 kb on + strandat 961.764 kb on + strandat 961.973 kb on - strand, within BACOVA_05471at 961.992 kb on + strand, within BACOVA_05471at 961.996 kb on + strand, within BACOVA_05471at 961.996 kb on + strand, within BACOVA_05471at 961.997 kb on - strand, within BACOVA_05471at 962.028 kb on - strand, within BACOVA_05471at 962.032 kb on + strand, within BACOVA_05471at 962.032 kb on + strand, within BACOVA_05471at 962.033 kb on - strand, within BACOVA_05471at 962.108 kb on + strand, within BACOVA_05471at 962.108 kb on + strand, within BACOVA_05471at 962.109 kb on - strand, within BACOVA_05471at 962.109 kb on - strand, within BACOVA_05471at 962.109 kb on - strand, within BACOVA_05471at 962.143 kb on + strand, within BACOVA_05471at 962.161 kb on - strand, within BACOVA_05471at 962.208 kb on - strand, within BACOVA_05471at 962.285 kb on + strand, within BACOVA_05471at 962.286 kb on - strand, within BACOVA_05471at 962.286 kb on - strand, within BACOVA_05471at 962.286 kb on - strand, within BACOVA_05471at 962.296 kb on + strand, within BACOVA_05471at 962.386 kb on + strand, within BACOVA_05471at 962.414 kb on + strand, within BACOVA_05471at 962.415 kb on - strand, within BACOVA_05471at 962.415 kb on - strand, within BACOVA_05471at 962.415 kb on - strand, within BACOVA_05471at 962.415 kb on - strand, within BACOVA_05471at 962.444 kb on - strand, within BACOVA_05471at 962.565 kb on + strand, within BACOVA_05471at 962.566 kb on - strand, within BACOVA_05471at 962.566 kb on - strand, within BACOVA_05471at 962.599 kb on + strand, within BACOVA_05471at 962.610 kb on + strand, within BACOVA_05471at 962.610 kb on + strand, within BACOVA_05471at 962.674 kb on + strand, within BACOVA_05471at 962.677 kb on + strand, within BACOVA_05471at 962.678 kb on - strand, within BACOVA_05471at 962.678 kb on - strand, within BACOVA_05471at 962.707 kb on - strand, within BACOVA_05471at 962.749 kb on + strand, within BACOVA_05471at 962.791 kb on + strand, within BACOVA_05471at 962.797 kb on + strand, within BACOVA_05471at 962.798 kb on - strand, within BACOVA_05471at 962.804 kb on + strand, within BACOVA_05471at 962.826 kb on + strand, within BACOVA_05471at 962.884 kb on + strand, within BACOVA_05471at 962.924 kb on + strand, within BACOVA_05471at 962.924 kb on + strand, within BACOVA_05471at 962.928 kb on + strand, within BACOVA_05471at 962.937 kb on + strand, within BACOVA_05471at 962.938 kb on - strand, within BACOVA_05471at 963.108 kb on + strand, within BACOVA_05471at 963.108 kb on + strand, within BACOVA_05471at 963.128 kb on - strandat 963.131 kb on + strandat 963.277 kb on + strandat 963.305 kb on + strandat 963.311 kb on - strandat 963.314 kb on - strandat 963.314 kb on - strandat 963.323 kb on + strandat 963.326 kb on + strandat 963.327 kb on - strandat 963.334 kb on - strandat 963.334 kb on - strandat 963.338 kb on - strandat 963.340 kb on - strandat 963.340 kb on - strandat 963.384 kb on - strandat 963.417 kb on - strandat 963.425 kb on - strandat 963.473 kb on + strandat 963.474 kb on - strandat 963.587 kb on + strand, within BACOVA_05472at 963.587 kb on + strand, within BACOVA_05472at 963.587 kb on + strand, within BACOVA_05472at 963.598 kb on + strand, within BACOVA_05472at 963.598 kb on + strand, within BACOVA_05472at 963.610 kb on - strand, within BACOVA_05472at 963.635 kb on - strand, within BACOVA_05472at 963.638 kb on - strand, within BACOVA_05472at 963.647 kb on - strand, within BACOVA_05472at 963.693 kb on + strand, within BACOVA_05472at 963.736 kb on - strand, within BACOVA_05472at 963.736 kb on - strand, within BACOVA_05472at 963.772 kb on - strand, within BACOVA_05472at 963.834 kb on - strand, within BACOVA_05472at 963.859 kb on + strand, within BACOVA_05472at 963.859 kb on + strand, within BACOVA_05472at 963.860 kb on - strand, within BACOVA_05472at 963.920 kb on - strand, within BACOVA_05472at 963.932 kb on + strand, within BACOVA_05472at 963.933 kb on - strand, within BACOVA_05472at 963.933 kb on - strand, within BACOVA_05472at 963.991 kb on - strand, within BACOVA_05472at 964.013 kb on - strand, within BACOVA_05472at 964.023 kb on - strand, within BACOVA_05472at 964.024 kb on + strand, within BACOVA_05472at 964.024 kb on + strand, within BACOVA_05472at 964.102 kb on - strand, within BACOVA_05472at 964.130 kb on + strand, within BACOVA_05472at 964.136 kb on + strand, within BACOVA_05472at 964.136 kb on + strand, within BACOVA_05472at 964.137 kb on - strand, within BACOVA_05472at 964.137 kb on - strand, within BACOVA_05472at 964.137 kb on - strand, within BACOVA_05472at 964.142 kb on + strand, within BACOVA_05472at 964.143 kb on - strand, within BACOVA_05472at 964.144 kb on + strand, within BACOVA_05472at 964.144 kb on + strand, within BACOVA_05472at 964.146 kb on + strand, within BACOVA_05472at 964.147 kb on - strand, within BACOVA_05472at 964.151 kb on + strand, within BACOVA_05472at 964.152 kb on - strand, within BACOVA_05472at 964.154 kb on - strand, within BACOVA_05472at 964.241 kb on + strand, within BACOVA_05472at 964.241 kb on + strand, within BACOVA_05472at 964.242 kb on - strand, within BACOVA_05472at 964.242 kb on - strand, within BACOVA_05472

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corncob 2.5 mg/ml (C)
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960,658 - -0.3
960,754 - -0.1
960,779 + BACOVA_05470 0.10 -1.0
960,779 + BACOVA_05470 0.10 +1.0
960,780 - BACOVA_05470 0.10 -0.3
960,780 - BACOVA_05470 0.10 -0.7
960,812 + BACOVA_05470 0.14 -0.4
960,812 + BACOVA_05470 0.14 -0.2
960,812 + BACOVA_05470 0.14 -0.7
960,812 + BACOVA_05470 0.14 -0.3
960,870 + BACOVA_05470 0.20 -0.6
960,871 - BACOVA_05470 0.20 -0.1
960,874 - BACOVA_05470 0.20 +0.9
960,939 + BACOVA_05470 0.27 -1.3
960,978 + BACOVA_05470 0.31 -0.3
961,003 - BACOVA_05470 0.34 -0.4
961,037 - BACOVA_05470 0.38 -0.7
961,058 + BACOVA_05470 0.40 -1.0
961,058 + BACOVA_05470 0.40 +0.8
961,059 - BACOVA_05470 0.40 +0.9
961,059 - BACOVA_05470 0.40 +1.3
961,202 - BACOVA_05470 0.55 -0.5
961,208 - BACOVA_05470 0.56 +0.1
961,244 + BACOVA_05470 0.60 -0.8
961,244 + BACOVA_05470 0.60 -0.9
961,244 + BACOVA_05470 0.60 +0.9
961,333 + BACOVA_05470 0.69 -0.1
961,334 - BACOVA_05470 0.69 -0.4
961,334 - BACOVA_05470 0.69 -2.6
961,394 - BACOVA_05470 0.76 -0.1
961,407 + BACOVA_05470 0.77 -1.7
961,407 + BACOVA_05470 0.77 -1.3
961,408 - BACOVA_05470 0.77 -3.1
961,417 + BACOVA_05470 0.78 -0.6
961,417 + BACOVA_05470 0.78 -0.0
961,420 - BACOVA_05470 0.78 +0.0
961,471 - BACOVA_05470 0.84 -1.2
961,565 - +0.3
961,577 - -1.7
961,603 + -0.2
961,610 + -0.7
961,610 + -0.6
961,633 + +0.2
961,634 - +0.7
961,636 + +0.4
961,636 + -0.6
961,636 + -1.4
961,640 + -0.7
961,640 + +0.8
961,640 + -0.9
961,643 + -1.0
961,643 + -0.1
961,644 - -1.3
961,718 + -0.9
961,718 + +0.6
961,718 + -0.2
961,722 + -0.4
961,722 + +0.8
961,723 - +0.7
961,726 - +1.3
961,728 + -0.0
961,764 + +0.3
961,973 - BACOVA_05471 0.20 -0.1
961,992 + BACOVA_05471 0.21 +0.1
961,996 + BACOVA_05471 0.21 -0.3
961,996 + BACOVA_05471 0.21 -0.6
961,997 - BACOVA_05471 0.21 -1.2
962,028 - BACOVA_05471 0.23 -0.1
962,032 + BACOVA_05471 0.23 +0.8
962,032 + BACOVA_05471 0.23 +0.4
962,033 - BACOVA_05471 0.23 +0.3
962,108 + BACOVA_05471 0.28 -0.3
962,108 + BACOVA_05471 0.28 -1.4
962,109 - BACOVA_05471 0.28 -1.5
962,109 - BACOVA_05471 0.28 -2.4
962,109 - BACOVA_05471 0.28 -1.2
962,143 + BACOVA_05471 0.30 -0.9
962,161 - BACOVA_05471 0.31 -0.7
962,208 - BACOVA_05471 0.34 +0.3
962,285 + BACOVA_05471 0.39 +2.8
962,286 - BACOVA_05471 0.39 -1.7
962,286 - BACOVA_05471 0.39 -0.7
962,286 - BACOVA_05471 0.39 +0.9
962,296 + BACOVA_05471 0.39 -1.9
962,386 + BACOVA_05471 0.45 -2.0
962,414 + BACOVA_05471 0.47 +0.7
962,415 - BACOVA_05471 0.47 +1.8
962,415 - BACOVA_05471 0.47 +1.3
962,415 - BACOVA_05471 0.47 -0.3
962,415 - BACOVA_05471 0.47 -0.5
962,444 - BACOVA_05471 0.48 -1.1
962,565 + BACOVA_05471 0.56 +0.0
962,566 - BACOVA_05471 0.56 -1.9
962,566 - BACOVA_05471 0.56 +0.6
962,599 + BACOVA_05471 0.58 -0.2
962,610 + BACOVA_05471 0.59 -0.1
962,610 + BACOVA_05471 0.59 +0.0
962,674 + BACOVA_05471 0.63 -2.3
962,677 + BACOVA_05471 0.63 +0.3
962,678 - BACOVA_05471 0.63 -0.3
962,678 - BACOVA_05471 0.63 +0.9
962,707 - BACOVA_05471 0.65 +0.1
962,749 + BACOVA_05471 0.67 -1.3
962,791 + BACOVA_05471 0.70 +1.1
962,797 + BACOVA_05471 0.70 +0.3
962,798 - BACOVA_05471 0.70 +1.3
962,804 + BACOVA_05471 0.71 -1.0
962,826 + BACOVA_05471 0.72 -0.2
962,884 + BACOVA_05471 0.75 -0.9
962,924 + BACOVA_05471 0.78 +0.9
962,924 + BACOVA_05471 0.78 +0.3
962,928 + BACOVA_05471 0.78 -0.3
962,937 + BACOVA_05471 0.79 +0.1
962,938 - BACOVA_05471 0.79 +0.4
963,108 + BACOVA_05471 0.89 +0.4
963,108 + BACOVA_05471 0.89 -1.8
963,128 - +0.3
963,131 + -0.9
963,277 + +0.2
963,305 + -1.1
963,311 - -0.6
963,314 - -0.3
963,314 - -0.5
963,323 + +1.3
963,326 + +0.3
963,327 - +0.0
963,334 - +0.3
963,334 - -0.6
963,338 - -0.7
963,340 - -0.3
963,340 - +0.7
963,384 - +0.4
963,417 - +0.7
963,425 - -2.2
963,473 + -1.6
963,474 - -0.7
963,587 + BACOVA_05472 0.15 -0.7
963,587 + BACOVA_05472 0.15 +0.1
963,587 + BACOVA_05472 0.15 -1.4
963,598 + BACOVA_05472 0.15 -0.3
963,598 + BACOVA_05472 0.15 -0.4
963,610 - BACOVA_05472 0.16 -0.2
963,635 - BACOVA_05472 0.18 +1.1
963,638 - BACOVA_05472 0.18 +0.7
963,647 - BACOVA_05472 0.18 -1.1
963,693 + BACOVA_05472 0.21 +1.3
963,736 - BACOVA_05472 0.24 +0.4
963,736 - BACOVA_05472 0.24 -0.8
963,772 - BACOVA_05472 0.26 -0.7
963,834 - BACOVA_05472 0.30 -1.3
963,859 + BACOVA_05472 0.31 -0.1
963,859 + BACOVA_05472 0.31 +0.4
963,860 - BACOVA_05472 0.31 -0.1
963,920 - BACOVA_05472 0.35 +0.2
963,932 + BACOVA_05472 0.36 +0.4
963,933 - BACOVA_05472 0.36 +0.2
963,933 - BACOVA_05472 0.36 -0.2
963,991 - BACOVA_05472 0.40 -1.4
964,013 - BACOVA_05472 0.41 -0.3
964,023 - BACOVA_05472 0.42 -0.2
964,024 + BACOVA_05472 0.42 +0.3
964,024 + BACOVA_05472 0.42 +0.1
964,102 - BACOVA_05472 0.46 -1.6
964,130 + BACOVA_05472 0.48 -1.1
964,136 + BACOVA_05472 0.49 +0.4
964,136 + BACOVA_05472 0.49 +0.8
964,137 - BACOVA_05472 0.49 -3.3
964,137 - BACOVA_05472 0.49 -0.5
964,137 - BACOVA_05472 0.49 +0.5
964,142 + BACOVA_05472 0.49 +0.3
964,143 - BACOVA_05472 0.49 +0.1
964,144 + BACOVA_05472 0.49 -0.1
964,144 + BACOVA_05472 0.49 -1.2
964,146 + BACOVA_05472 0.49 -0.5
964,147 - BACOVA_05472 0.49 +0.7
964,151 + BACOVA_05472 0.49 +0.1
964,152 - BACOVA_05472 0.50 +1.0
964,154 - BACOVA_05472 0.50 +1.0
964,241 + BACOVA_05472 0.55 +0.3
964,241 + BACOVA_05472 0.55 -0.4
964,242 - BACOVA_05472 0.55 +0.5
964,242 - BACOVA_05472 0.55 +1.3

Or see this region's nucleotide sequence