Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04517

Experiment: Xylan from corncob 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04516 and BACOVA_04517 are separated by 4 nucleotidesBACOVA_04517 and BACOVA_04518 overlap by 4 nucleotides BACOVA_04516: BACOVA_04516 - peptidase C1-like family, at 456,004 to 457,188 _04516 BACOVA_04517: BACOVA_04517 - response regulator receiver domain protein, at 457,193 to 457,921 _04517 BACOVA_04518: BACOVA_04518 - histidine kinase, at 457,918 to 459,132 _04518 Position (kb) 457 458Strain fitness (log2 ratio) -2 -1 0 1 2at 456.204 kb on + strand, within BACOVA_04516at 456.275 kb on + strand, within BACOVA_04516at 456.275 kb on + strand, within BACOVA_04516at 456.276 kb on - strand, within BACOVA_04516at 456.276 kb on - strand, within BACOVA_04516at 456.276 kb on - strand, within BACOVA_04516at 456.276 kb on - strand, within BACOVA_04516at 456.326 kb on + strand, within BACOVA_04516at 456.327 kb on - strand, within BACOVA_04516at 456.327 kb on - strand, within BACOVA_04516at 456.331 kb on + strand, within BACOVA_04516at 456.332 kb on - strand, within BACOVA_04516at 456.332 kb on - strand, within BACOVA_04516at 456.346 kb on + strand, within BACOVA_04516at 456.347 kb on - strand, within BACOVA_04516at 456.378 kb on + strand, within BACOVA_04516at 456.379 kb on - strand, within BACOVA_04516at 456.381 kb on + strand, within BACOVA_04516at 456.381 kb on + strand, within BACOVA_04516at 456.381 kb on + strand, within BACOVA_04516at 456.381 kb on + strand, within BACOVA_04516at 456.382 kb on - strand, within BACOVA_04516at 456.385 kb on + strand, within BACOVA_04516at 456.386 kb on - strand, within BACOVA_04516at 456.386 kb on - strand, within BACOVA_04516at 456.409 kb on - strand, within BACOVA_04516at 456.465 kb on - strand, within BACOVA_04516at 456.498 kb on - strand, within BACOVA_04516at 456.498 kb on - strand, within BACOVA_04516at 456.508 kb on + strand, within BACOVA_04516at 456.517 kb on + strand, within BACOVA_04516at 456.518 kb on - strand, within BACOVA_04516at 456.518 kb on - strand, within BACOVA_04516at 456.548 kb on - strand, within BACOVA_04516at 456.563 kb on - strand, within BACOVA_04516at 456.603 kb on + strand, within BACOVA_04516at 456.610 kb on + strand, within BACOVA_04516at 456.610 kb on + strand, within BACOVA_04516at 456.611 kb on - strand, within BACOVA_04516at 456.615 kb on - strand, within BACOVA_04516at 456.630 kb on + strand, within BACOVA_04516at 456.630 kb on + strand, within BACOVA_04516at 456.630 kb on + strand, within BACOVA_04516at 456.630 kb on + strand, within BACOVA_04516at 456.631 kb on - strand, within BACOVA_04516at 456.646 kb on + strand, within BACOVA_04516at 456.647 kb on - strand, within BACOVA_04516at 456.675 kb on + strand, within BACOVA_04516at 456.685 kb on - strand, within BACOVA_04516at 456.698 kb on - strand, within BACOVA_04516at 456.754 kb on + strand, within BACOVA_04516at 456.756 kb on + strand, within BACOVA_04516at 456.905 kb on + strand, within BACOVA_04516at 456.936 kb on + strand, within BACOVA_04516at 456.998 kb on + strand, within BACOVA_04516at 457.003 kb on + strand, within BACOVA_04516at 457.003 kb on + strand, within BACOVA_04516at 457.004 kb on - strand, within BACOVA_04516at 457.009 kb on - strand, within BACOVA_04516at 457.036 kb on + strand, within BACOVA_04516at 457.036 kb on + strand, within BACOVA_04516at 457.037 kb on - strand, within BACOVA_04516at 457.037 kb on - strand, within BACOVA_04516at 457.063 kb on - strand, within BACOVA_04516at 457.075 kb on + strandat 457.076 kb on - strandat 457.084 kb on - strandat 457.084 kb on - strandat 457.128 kb on + strandat 457.129 kb on - strandat 457.190 kb on + strandat 457.194 kb on + strandat 457.259 kb on - strandat 457.261 kb on - strandat 457.264 kb on + strandat 457.265 kb on - strandat 457.265 kb on - strandat 457.270 kb on + strand, within BACOVA_04517at 457.271 kb on - strand, within BACOVA_04517at 457.327 kb on - strand, within BACOVA_04517at 457.327 kb on - strand, within BACOVA_04517at 457.327 kb on - strand, within BACOVA_04517at 457.398 kb on - strand, within BACOVA_04517at 457.426 kb on + strand, within BACOVA_04517at 457.453 kb on + strand, within BACOVA_04517at 457.454 kb on - strand, within BACOVA_04517at 457.455 kb on + strand, within BACOVA_04517at 457.492 kb on - strand, within BACOVA_04517at 457.607 kb on + strand, within BACOVA_04517at 457.643 kb on + strand, within BACOVA_04517at 457.644 kb on - strand, within BACOVA_04517at 457.728 kb on - strand, within BACOVA_04517at 457.728 kb on - strand, within BACOVA_04517at 457.759 kb on + strand, within BACOVA_04517at 457.759 kb on + strand, within BACOVA_04517at 457.759 kb on + strand, within BACOVA_04517at 457.760 kb on - strand, within BACOVA_04517at 457.760 kb on - strand, within BACOVA_04517at 457.760 kb on - strand, within BACOVA_04517at 457.760 kb on - strand, within BACOVA_04517at 457.763 kb on - strand, within BACOVA_04517at 457.799 kb on + strand, within BACOVA_04517at 457.799 kb on + strand, within BACOVA_04517at 457.799 kb on + strand, within BACOVA_04517at 457.835 kb on + strand, within BACOVA_04517at 457.835 kb on + strand, within BACOVA_04517at 457.835 kb on + strand, within BACOVA_04517at 457.864 kb on + strandat 457.864 kb on + strandat 457.865 kb on - strandat 457.865 kb on - strandat 457.867 kb on - strandat 457.867 kb on - strandat 457.904 kb on + strandat 457.905 kb on - strandat 457.905 kb on - strandat 457.905 kb on - strandat 457.910 kb on + strandat 457.910 kb on + strandat 457.911 kb on - strandat 457.913 kb on - strandat 457.913 kb on - strandat 457.925 kb on - strandat 457.928 kb on - strandat 457.935 kb on + strandat 457.942 kb on + strandat 457.942 kb on + strandat 457.957 kb on - strandat 457.986 kb on - strandat 457.986 kb on - strandat 458.068 kb on - strand, within BACOVA_04518at 458.068 kb on - strand, within BACOVA_04518at 458.130 kb on + strand, within BACOVA_04518at 458.131 kb on - strand, within BACOVA_04518at 458.164 kb on - strand, within BACOVA_04518at 458.244 kb on + strand, within BACOVA_04518at 458.351 kb on + strand, within BACOVA_04518at 458.352 kb on - strand, within BACOVA_04518at 458.424 kb on + strand, within BACOVA_04518at 458.425 kb on - strand, within BACOVA_04518at 458.425 kb on - strand, within BACOVA_04518at 458.425 kb on - strand, within BACOVA_04518at 458.428 kb on - strand, within BACOVA_04518at 458.436 kb on + strand, within BACOVA_04518at 458.436 kb on + strand, within BACOVA_04518at 458.457 kb on + strand, within BACOVA_04518at 458.573 kb on - strand, within BACOVA_04518at 458.601 kb on + strand, within BACOVA_04518at 458.754 kb on + strand, within BACOVA_04518at 458.755 kb on - strand, within BACOVA_04518at 458.785 kb on - strand, within BACOVA_04518at 458.867 kb on - strand, within BACOVA_04518at 458.889 kb on + strand, within BACOVA_04518at 458.889 kb on + strand, within BACOVA_04518at 458.892 kb on - strand, within BACOVA_04518

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corncob 2.5 mg/ml (C)
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456,204 + BACOVA_04516 0.17 -0.3
456,275 + BACOVA_04516 0.23 -0.3
456,275 + BACOVA_04516 0.23 -0.2
456,276 - BACOVA_04516 0.23 -0.4
456,276 - BACOVA_04516 0.23 +1.3
456,276 - BACOVA_04516 0.23 +0.3
456,276 - BACOVA_04516 0.23 -0.5
456,326 + BACOVA_04516 0.27 +0.3
456,327 - BACOVA_04516 0.27 +0.6
456,327 - BACOVA_04516 0.27 -0.4
456,331 + BACOVA_04516 0.28 -0.9
456,332 - BACOVA_04516 0.28 -0.7
456,332 - BACOVA_04516 0.28 +0.4
456,346 + BACOVA_04516 0.29 +0.9
456,347 - BACOVA_04516 0.29 -0.2
456,378 + BACOVA_04516 0.32 +0.0
456,379 - BACOVA_04516 0.32 +0.6
456,381 + BACOVA_04516 0.32 +2.3
456,381 + BACOVA_04516 0.32 +0.1
456,381 + BACOVA_04516 0.32 +1.0
456,381 + BACOVA_04516 0.32 -0.6
456,382 - BACOVA_04516 0.32 +0.4
456,385 + BACOVA_04516 0.32 +0.1
456,386 - BACOVA_04516 0.32 -1.2
456,386 - BACOVA_04516 0.32 +0.1
456,409 - BACOVA_04516 0.34 -1.9
456,465 - BACOVA_04516 0.39 -0.2
456,498 - BACOVA_04516 0.42 -0.0
456,498 - BACOVA_04516 0.42 -0.8
456,508 + BACOVA_04516 0.43 -1.2
456,517 + BACOVA_04516 0.43 -0.3
456,518 - BACOVA_04516 0.43 -0.2
456,518 - BACOVA_04516 0.43 -0.3
456,548 - BACOVA_04516 0.46 +0.0
456,563 - BACOVA_04516 0.47 -0.0
456,603 + BACOVA_04516 0.51 +1.3
456,610 + BACOVA_04516 0.51 -0.3
456,610 + BACOVA_04516 0.51 -0.6
456,611 - BACOVA_04516 0.51 -1.0
456,615 - BACOVA_04516 0.52 +0.3
456,630 + BACOVA_04516 0.53 +0.3
456,630 + BACOVA_04516 0.53 +0.1
456,630 + BACOVA_04516 0.53 +0.7
456,630 + BACOVA_04516 0.53 -2.7
456,631 - BACOVA_04516 0.53 -0.5
456,646 + BACOVA_04516 0.54 -1.6
456,647 - BACOVA_04516 0.54 -0.4
456,675 + BACOVA_04516 0.57 -0.5
456,685 - BACOVA_04516 0.57 -0.0
456,698 - BACOVA_04516 0.59 -1.7
456,754 + BACOVA_04516 0.63 +1.3
456,756 + BACOVA_04516 0.63 -1.1
456,905 + BACOVA_04516 0.76 +0.3
456,936 + BACOVA_04516 0.79 -0.3
456,998 + BACOVA_04516 0.84 +0.1
457,003 + BACOVA_04516 0.84 -0.6
457,003 + BACOVA_04516 0.84 -0.5
457,004 - BACOVA_04516 0.84 +0.3
457,009 - BACOVA_04516 0.85 +0.0
457,036 + BACOVA_04516 0.87 -0.7
457,036 + BACOVA_04516 0.87 -0.1
457,037 - BACOVA_04516 0.87 +0.3
457,037 - BACOVA_04516 0.87 -0.3
457,063 - BACOVA_04516 0.89 -0.3
457,075 + +0.3
457,076 - -1.2
457,084 - +1.0
457,084 - +0.0
457,128 + -0.9
457,129 - +0.5
457,190 + -1.2
457,194 + -0.1
457,259 - -0.7
457,261 - -0.6
457,264 + +0.1
457,265 - +0.3
457,265 - -0.2
457,270 + BACOVA_04517 0.11 -0.0
457,271 - BACOVA_04517 0.11 -0.1
457,327 - BACOVA_04517 0.18 -0.7
457,327 - BACOVA_04517 0.18 +0.2
457,327 - BACOVA_04517 0.18 -0.1
457,398 - BACOVA_04517 0.28 -0.4
457,426 + BACOVA_04517 0.32 -0.3
457,453 + BACOVA_04517 0.36 -0.6
457,454 - BACOVA_04517 0.36 +0.6
457,455 + BACOVA_04517 0.36 +0.8
457,492 - BACOVA_04517 0.41 -0.4
457,607 + BACOVA_04517 0.57 -0.1
457,643 + BACOVA_04517 0.62 -0.1
457,644 - BACOVA_04517 0.62 +0.7
457,728 - BACOVA_04517 0.73 -0.8
457,728 - BACOVA_04517 0.73 +0.6
457,759 + BACOVA_04517 0.78 +1.0
457,759 + BACOVA_04517 0.78 +0.4
457,759 + BACOVA_04517 0.78 -0.1
457,760 - BACOVA_04517 0.78 +0.8
457,760 - BACOVA_04517 0.78 -1.6
457,760 - BACOVA_04517 0.78 +1.0
457,760 - BACOVA_04517 0.78 -1.3
457,763 - BACOVA_04517 0.78 +0.2
457,799 + BACOVA_04517 0.83 -0.5
457,799 + BACOVA_04517 0.83 +1.0
457,799 + BACOVA_04517 0.83 +0.5
457,835 + BACOVA_04517 0.88 +0.1
457,835 + BACOVA_04517 0.88 -0.3
457,835 + BACOVA_04517 0.88 -0.5
457,864 + -0.6
457,864 + +0.1
457,865 - -0.5
457,865 - -1.1
457,867 - +0.3
457,867 - -1.2
457,904 + +1.3
457,905 - +0.1
457,905 - +1.3
457,905 - -0.5
457,910 + +0.7
457,910 + -0.0
457,911 - +1.9
457,913 - +0.7
457,913 - +0.5
457,925 - -1.2
457,928 - +0.8
457,935 + +0.2
457,942 + +0.2
457,942 + +0.8
457,957 - -0.8
457,986 - +2.3
457,986 - -0.3
458,068 - BACOVA_04518 0.12 +0.8
458,068 - BACOVA_04518 0.12 -0.2
458,130 + BACOVA_04518 0.17 +0.3
458,131 - BACOVA_04518 0.18 +1.7
458,164 - BACOVA_04518 0.20 +0.9
458,244 + BACOVA_04518 0.27 -1.3
458,351 + BACOVA_04518 0.36 -0.1
458,352 - BACOVA_04518 0.36 +0.8
458,424 + BACOVA_04518 0.42 +0.3
458,425 - BACOVA_04518 0.42 -0.7
458,425 - BACOVA_04518 0.42 +0.1
458,425 - BACOVA_04518 0.42 -1.3
458,428 - BACOVA_04518 0.42 -0.9
458,436 + BACOVA_04518 0.43 -1.3
458,436 + BACOVA_04518 0.43 -0.2
458,457 + BACOVA_04518 0.44 +1.3
458,573 - BACOVA_04518 0.54 -0.5
458,601 + BACOVA_04518 0.56 -0.1
458,754 + BACOVA_04518 0.69 -0.3
458,755 - BACOVA_04518 0.69 +0.6
458,785 - BACOVA_04518 0.71 +0.5
458,867 - BACOVA_04518 0.78 +0.2
458,889 + BACOVA_04518 0.80 -0.4
458,889 + BACOVA_04518 0.80 -0.7
458,892 - BACOVA_04518 0.80 -0.9

Or see this region's nucleotide sequence