Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04291

Experiment: Xylan from corncob 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04290 and BACOVA_04291 overlap by 35 nucleotidesBACOVA_04291 and BACOVA_04292 are separated by 195 nucleotides BACOVA_04290: BACOVA_04290 - peptidase, C69 family, at 177,222 to 178,928 _04290 BACOVA_04291: BACOVA_04291 - peptidase, M23 family, at 178,894 to 180,549 _04291 BACOVA_04292: BACOVA_04292 - hypothetical protein, at 180,745 to 183,378 _04292 Position (kb) 178 179 180 181Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 177.905 kb on - strand, within BACOVA_04290at 177.953 kb on - strand, within BACOVA_04290at 177.953 kb on - strand, within BACOVA_04290at 177.969 kb on - strand, within BACOVA_04290at 177.969 kb on - strand, within BACOVA_04290at 177.969 kb on - strand, within BACOVA_04290at 177.969 kb on - strand, within BACOVA_04290at 177.995 kb on + strand, within BACOVA_04290at 177.995 kb on + strand, within BACOVA_04290at 177.996 kb on - strand, within BACOVA_04290at 177.996 kb on - strand, within BACOVA_04290at 178.048 kb on + strand, within BACOVA_04290at 178.048 kb on + strand, within BACOVA_04290at 178.048 kb on + strand, within BACOVA_04290at 178.057 kb on + strand, within BACOVA_04290at 178.085 kb on + strand, within BACOVA_04290at 178.090 kb on + strand, within BACOVA_04290at 178.145 kb on - strand, within BACOVA_04290at 178.160 kb on + strand, within BACOVA_04290at 178.181 kb on + strand, within BACOVA_04290at 178.187 kb on - strand, within BACOVA_04290at 178.225 kb on + strand, within BACOVA_04290at 178.225 kb on + strand, within BACOVA_04290at 178.226 kb on - strand, within BACOVA_04290at 178.250 kb on + strand, within BACOVA_04290at 178.311 kb on + strand, within BACOVA_04290at 178.311 kb on + strand, within BACOVA_04290at 178.312 kb on - strand, within BACOVA_04290at 178.312 kb on - strand, within BACOVA_04290at 178.391 kb on + strand, within BACOVA_04290at 178.394 kb on + strand, within BACOVA_04290at 178.424 kb on - strand, within BACOVA_04290at 178.434 kb on + strand, within BACOVA_04290at 178.435 kb on - strand, within BACOVA_04290at 178.451 kb on + strand, within BACOVA_04290at 178.452 kb on - strand, within BACOVA_04290at 178.492 kb on + strand, within BACOVA_04290at 178.493 kb on - strand, within BACOVA_04290at 178.514 kb on + strand, within BACOVA_04290at 178.572 kb on - strand, within BACOVA_04290at 178.579 kb on + strand, within BACOVA_04290at 178.580 kb on - strand, within BACOVA_04290at 178.599 kb on + strand, within BACOVA_04290at 178.599 kb on + strand, within BACOVA_04290at 178.600 kb on - strand, within BACOVA_04290at 178.600 kb on - strand, within BACOVA_04290at 178.600 kb on - strand, within BACOVA_04290at 178.606 kb on + strand, within BACOVA_04290at 178.606 kb on + strand, within BACOVA_04290at 178.607 kb on - strand, within BACOVA_04290at 178.660 kb on + strand, within BACOVA_04290at 178.692 kb on - strand, within BACOVA_04290at 178.692 kb on - strand, within BACOVA_04290at 178.703 kb on - strand, within BACOVA_04290at 178.708 kb on + strand, within BACOVA_04290at 178.709 kb on - strand, within BACOVA_04290at 178.723 kb on - strand, within BACOVA_04290at 178.833 kb on + strandat 178.865 kb on + strandat 178.869 kb on - strandat 178.874 kb on + strandat 178.891 kb on - strandat 178.962 kb on + strandat 178.963 kb on - strandat 178.963 kb on - strandat 179.001 kb on + strandat 179.013 kb on - strandat 179.048 kb on + strandat 179.189 kb on + strand, within BACOVA_04291at 179.189 kb on + strand, within BACOVA_04291at 179.190 kb on - strand, within BACOVA_04291at 179.235 kb on - strand, within BACOVA_04291at 179.245 kb on + strand, within BACOVA_04291at 179.245 kb on + strand, within BACOVA_04291at 179.253 kb on - strand, within BACOVA_04291at 179.272 kb on + strand, within BACOVA_04291at 179.286 kb on - strand, within BACOVA_04291at 179.286 kb on - strand, within BACOVA_04291at 179.289 kb on - strand, within BACOVA_04291at 179.383 kb on - strand, within BACOVA_04291at 179.438 kb on + strand, within BACOVA_04291at 179.490 kb on + strand, within BACOVA_04291at 179.490 kb on + strand, within BACOVA_04291at 179.491 kb on - strand, within BACOVA_04291at 179.496 kb on + strand, within BACOVA_04291at 179.609 kb on + strand, within BACOVA_04291at 179.610 kb on - strand, within BACOVA_04291at 179.611 kb on + strand, within BACOVA_04291at 179.612 kb on - strand, within BACOVA_04291at 179.612 kb on - strand, within BACOVA_04291at 179.716 kb on - strand, within BACOVA_04291at 179.717 kb on + strand, within BACOVA_04291at 179.717 kb on + strand, within BACOVA_04291at 179.717 kb on + strand, within BACOVA_04291at 179.718 kb on - strand, within BACOVA_04291at 179.718 kb on - strand, within BACOVA_04291at 179.718 kb on - strand, within BACOVA_04291at 179.718 kb on - strand, within BACOVA_04291at 179.718 kb on - strand, within BACOVA_04291at 179.739 kb on + strand, within BACOVA_04291at 179.773 kb on + strand, within BACOVA_04291at 179.803 kb on + strand, within BACOVA_04291at 179.804 kb on - strand, within BACOVA_04291at 179.808 kb on + strand, within BACOVA_04291at 179.808 kb on + strand, within BACOVA_04291at 179.809 kb on - strand, within BACOVA_04291at 179.809 kb on - strand, within BACOVA_04291at 179.822 kb on + strand, within BACOVA_04291at 179.823 kb on - strand, within BACOVA_04291at 179.839 kb on - strand, within BACOVA_04291at 179.855 kb on + strand, within BACOVA_04291at 179.861 kb on + strand, within BACOVA_04291at 179.862 kb on - strand, within BACOVA_04291at 179.913 kb on + strand, within BACOVA_04291at 179.932 kb on - strand, within BACOVA_04291at 179.932 kb on - strand, within BACOVA_04291at 179.953 kb on + strand, within BACOVA_04291at 179.953 kb on + strand, within BACOVA_04291at 179.985 kb on + strand, within BACOVA_04291at 180.010 kb on - strand, within BACOVA_04291at 180.039 kb on + strand, within BACOVA_04291at 180.040 kb on - strand, within BACOVA_04291at 180.040 kb on - strand, within BACOVA_04291at 180.040 kb on - strand, within BACOVA_04291at 180.049 kb on - strand, within BACOVA_04291at 180.050 kb on + strand, within BACOVA_04291at 180.051 kb on - strand, within BACOVA_04291at 180.051 kb on - strand, within BACOVA_04291at 180.074 kb on - strand, within BACOVA_04291at 180.200 kb on + strand, within BACOVA_04291at 180.270 kb on - strand, within BACOVA_04291at 180.333 kb on + strand, within BACOVA_04291at 180.334 kb on - strand, within BACOVA_04291at 180.335 kb on + strand, within BACOVA_04291at 180.466 kb on + strandat 180.476 kb on - strandat 180.536 kb on + strandat 180.537 kb on - strandat 180.537 kb on - strandat 180.579 kb on - strandat 180.583 kb on + strandat 180.583 kb on + strandat 180.583 kb on + strandat 180.584 kb on - strandat 180.604 kb on + strandat 180.626 kb on + strandat 180.626 kb on + strandat 180.631 kb on - strandat 180.659 kb on - strandat 180.691 kb on + strandat 180.692 kb on - strandat 180.724 kb on + strandat 180.728 kb on + strandat 180.755 kb on - strandat 180.758 kb on + strandat 180.758 kb on + strandat 180.758 kb on + strandat 180.758 kb on + strandat 180.786 kb on + strandat 180.787 kb on - strandat 180.787 kb on - strandat 180.788 kb on + strandat 180.788 kb on + strandat 180.898 kb on - strandat 180.956 kb on + strandat 180.957 kb on - strandat 181.020 kb on - strand, within BACOVA_04292at 181.020 kb on - strand, within BACOVA_04292at 181.071 kb on - strand, within BACOVA_04292at 181.083 kb on - strand, within BACOVA_04292at 181.143 kb on - strand, within BACOVA_04292at 181.160 kb on + strand, within BACOVA_04292at 181.185 kb on + strand, within BACOVA_04292at 181.186 kb on - strand, within BACOVA_04292at 181.186 kb on - strand, within BACOVA_04292at 181.186 kb on - strand, within BACOVA_04292at 181.290 kb on + strand, within BACOVA_04292at 181.294 kb on + strand, within BACOVA_04292at 181.295 kb on - strand, within BACOVA_04292at 181.325 kb on + strand, within BACOVA_04292at 181.329 kb on + strand, within BACOVA_04292at 181.374 kb on + strand, within BACOVA_04292at 181.374 kb on + strand, within BACOVA_04292at 181.446 kb on + strand, within BACOVA_04292at 181.446 kb on + strand, within BACOVA_04292at 181.449 kb on + strand, within BACOVA_04292at 181.453 kb on - strand, within BACOVA_04292at 181.460 kb on - strand, within BACOVA_04292at 181.460 kb on - strand, within BACOVA_04292at 181.464 kb on - strand, within BACOVA_04292at 181.477 kb on - strand, within BACOVA_04292at 181.494 kb on - strand, within BACOVA_04292

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corncob 2.5 mg/ml (C)
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177,905 - BACOVA_04290 0.40 +0.5
177,953 - BACOVA_04290 0.43 -0.2
177,953 - BACOVA_04290 0.43 +1.9
177,969 - BACOVA_04290 0.44 -1.3
177,969 - BACOVA_04290 0.44 -1.0
177,969 - BACOVA_04290 0.44 -0.7
177,969 - BACOVA_04290 0.44 -1.0
177,995 + BACOVA_04290 0.45 +0.3
177,995 + BACOVA_04290 0.45 -0.2
177,996 - BACOVA_04290 0.45 +0.4
177,996 - BACOVA_04290 0.45 -0.7
178,048 + BACOVA_04290 0.48 +0.3
178,048 + BACOVA_04290 0.48 +0.7
178,048 + BACOVA_04290 0.48 +0.7
178,057 + BACOVA_04290 0.49 +0.7
178,085 + BACOVA_04290 0.51 -0.2
178,090 + BACOVA_04290 0.51 +1.3
178,145 - BACOVA_04290 0.54 +0.5
178,160 + BACOVA_04290 0.55 -1.3
178,181 + BACOVA_04290 0.56 -2.2
178,187 - BACOVA_04290 0.57 -1.2
178,225 + BACOVA_04290 0.59 +0.2
178,225 + BACOVA_04290 0.59 -0.6
178,226 - BACOVA_04290 0.59 +0.4
178,250 + BACOVA_04290 0.60 +0.4
178,311 + BACOVA_04290 0.64 -1.3
178,311 + BACOVA_04290 0.64 +1.3
178,312 - BACOVA_04290 0.64 -0.3
178,312 - BACOVA_04290 0.64 +0.3
178,391 + BACOVA_04290 0.68 -0.3
178,394 + BACOVA_04290 0.69 +0.2
178,424 - BACOVA_04290 0.70 +1.2
178,434 + BACOVA_04290 0.71 -0.3
178,435 - BACOVA_04290 0.71 +0.7
178,451 + BACOVA_04290 0.72 -0.8
178,452 - BACOVA_04290 0.72 +0.0
178,492 + BACOVA_04290 0.74 +0.9
178,493 - BACOVA_04290 0.74 -0.1
178,514 + BACOVA_04290 0.76 +0.5
178,572 - BACOVA_04290 0.79 -0.3
178,579 + BACOVA_04290 0.79 -1.2
178,580 - BACOVA_04290 0.80 +0.3
178,599 + BACOVA_04290 0.81 +0.3
178,599 + BACOVA_04290 0.81 +0.3
178,600 - BACOVA_04290 0.81 +0.8
178,600 - BACOVA_04290 0.81 +1.3
178,600 - BACOVA_04290 0.81 -0.2
178,606 + BACOVA_04290 0.81 -0.9
178,606 + BACOVA_04290 0.81 -0.4
178,607 - BACOVA_04290 0.81 +1.0
178,660 + BACOVA_04290 0.84 -0.3
178,692 - BACOVA_04290 0.86 +0.2
178,692 - BACOVA_04290 0.86 -0.3
178,703 - BACOVA_04290 0.87 -0.0
178,708 + BACOVA_04290 0.87 -0.5
178,709 - BACOVA_04290 0.87 +0.7
178,723 - BACOVA_04290 0.88 +1.0
178,833 + +0.0
178,865 + +0.1
178,869 - -1.0
178,874 + -0.7
178,891 - -0.1
178,962 + -0.2
178,963 - -1.0
178,963 - -0.3
179,001 + -0.4
179,013 - +0.7
179,048 + +0.1
179,189 + BACOVA_04291 0.18 +0.2
179,189 + BACOVA_04291 0.18 +0.3
179,190 - BACOVA_04291 0.18 +0.5
179,235 - BACOVA_04291 0.21 -0.6
179,245 + BACOVA_04291 0.21 +0.6
179,245 + BACOVA_04291 0.21 +0.9
179,253 - BACOVA_04291 0.22 +0.8
179,272 + BACOVA_04291 0.23 +0.1
179,286 - BACOVA_04291 0.24 +0.1
179,286 - BACOVA_04291 0.24 +0.7
179,289 - BACOVA_04291 0.24 -0.9
179,383 - BACOVA_04291 0.30 +0.6
179,438 + BACOVA_04291 0.33 +1.1
179,490 + BACOVA_04291 0.36 -0.4
179,490 + BACOVA_04291 0.36 +1.4
179,491 - BACOVA_04291 0.36 -0.0
179,496 + BACOVA_04291 0.36 +2.6
179,609 + BACOVA_04291 0.43 +0.7
179,610 - BACOVA_04291 0.43 +0.3
179,611 + BACOVA_04291 0.43 +0.5
179,612 - BACOVA_04291 0.43 -0.5
179,612 - BACOVA_04291 0.43 -1.5
179,716 - BACOVA_04291 0.50 +0.1
179,717 + BACOVA_04291 0.50 +1.3
179,717 + BACOVA_04291 0.50 +0.9
179,717 + BACOVA_04291 0.50 -1.0
179,718 - BACOVA_04291 0.50 -0.8
179,718 - BACOVA_04291 0.50 -1.3
179,718 - BACOVA_04291 0.50 -0.1
179,718 - BACOVA_04291 0.50 +0.4
179,718 - BACOVA_04291 0.50 -0.4
179,739 + BACOVA_04291 0.51 +0.6
179,773 + BACOVA_04291 0.53 +1.9
179,803 + BACOVA_04291 0.55 +0.3
179,804 - BACOVA_04291 0.55 -0.3
179,808 + BACOVA_04291 0.55 +0.5
179,808 + BACOVA_04291 0.55 -3.6
179,809 - BACOVA_04291 0.55 -1.1
179,809 - BACOVA_04291 0.55 +0.3
179,822 + BACOVA_04291 0.56 +0.2
179,823 - BACOVA_04291 0.56 +1.3
179,839 - BACOVA_04291 0.57 +1.3
179,855 + BACOVA_04291 0.58 -0.3
179,861 + BACOVA_04291 0.58 +0.5
179,862 - BACOVA_04291 0.58 +0.3
179,913 + BACOVA_04291 0.62 +1.7
179,932 - BACOVA_04291 0.63 +1.1
179,932 - BACOVA_04291 0.63 +0.3
179,953 + BACOVA_04291 0.64 +0.7
179,953 + BACOVA_04291 0.64 -0.3
179,985 + BACOVA_04291 0.66 +0.6
180,010 - BACOVA_04291 0.67 -0.3
180,039 + BACOVA_04291 0.69 +0.1
180,040 - BACOVA_04291 0.69 +0.4
180,040 - BACOVA_04291 0.69 -0.5
180,040 - BACOVA_04291 0.69 -0.2
180,049 - BACOVA_04291 0.70 -0.0
180,050 + BACOVA_04291 0.70 +0.7
180,051 - BACOVA_04291 0.70 +0.2
180,051 - BACOVA_04291 0.70 +1.2
180,074 - BACOVA_04291 0.71 -1.0
180,200 + BACOVA_04291 0.79 -0.1
180,270 - BACOVA_04291 0.83 -0.3
180,333 + BACOVA_04291 0.87 +0.2
180,334 - BACOVA_04291 0.87 -0.2
180,335 + BACOVA_04291 0.87 -0.4
180,466 + +1.5
180,476 - +0.3
180,536 + -0.2
180,537 - -0.7
180,537 - +1.9
180,579 - +0.7
180,583 + -0.0
180,583 + +0.7
180,583 + +0.1
180,584 - +0.6
180,604 + +1.0
180,626 + +0.9
180,626 + -0.9
180,631 - -1.0
180,659 - +0.7
180,691 + +1.9
180,692 - +0.9
180,724 + +0.4
180,728 + +0.3
180,755 - +1.7
180,758 + +0.3
180,758 + -0.5
180,758 + -1.0
180,758 + -0.4
180,786 + -0.2
180,787 - +0.4
180,787 - -1.0
180,788 + +1.3
180,788 + +1.9
180,898 - -1.6
180,956 + -0.5
180,957 - +1.3
181,020 - BACOVA_04292 0.10 -0.3
181,020 - BACOVA_04292 0.10 -0.3
181,071 - BACOVA_04292 0.12 -0.5
181,083 - BACOVA_04292 0.13 -1.9
181,143 - BACOVA_04292 0.15 -0.7
181,160 + BACOVA_04292 0.16 -0.1
181,185 + BACOVA_04292 0.17 -0.1
181,186 - BACOVA_04292 0.17 -0.2
181,186 - BACOVA_04292 0.17 -0.2
181,186 - BACOVA_04292 0.17 +0.4
181,290 + BACOVA_04292 0.21 +0.5
181,294 + BACOVA_04292 0.21 +0.6
181,295 - BACOVA_04292 0.21 +0.1
181,325 + BACOVA_04292 0.22 -0.2
181,329 + BACOVA_04292 0.22 -0.8
181,374 + BACOVA_04292 0.24 +0.5
181,374 + BACOVA_04292 0.24 +0.8
181,446 + BACOVA_04292 0.27 +0.4
181,446 + BACOVA_04292 0.27 -0.7
181,449 + BACOVA_04292 0.27 +0.5
181,453 - BACOVA_04292 0.27 +0.5
181,460 - BACOVA_04292 0.27 -1.9
181,460 - BACOVA_04292 0.27 +1.0
181,464 - BACOVA_04292 0.27 +1.0
181,477 - BACOVA_04292 0.28 -1.2
181,494 - BACOVA_04292 0.28 +1.0

Or see this region's nucleotide sequence