Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01982

Experiment: Xylan from corncob 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01981 and BACOVA_01982 are separated by 203 nucleotidesBACOVA_01982 and BACOVA_01983 are separated by 26 nucleotides BACOVA_01981: BACOVA_01981 - hypothetical protein, at 202,570 to 204,486 _01981 BACOVA_01982: BACOVA_01982 - hypothetical protein, at 204,690 to 204,797 _01982 BACOVA_01983: BACOVA_01983 - putative DNA-binding protein, at 204,824 to 205,435 _01983 Position (kb) 204 205Strain fitness (log2 ratio) -2 -1 0 1 2at 204.508 kb on - strandat 204.563 kb on - strandat 204.568 kb on - strandat 204.568 kb on - strandat 204.570 kb on + strandat 204.570 kb on + strandat 204.577 kb on + strandat 204.578 kb on - strandat 204.578 kb on - strandat 204.609 kb on + strandat 204.611 kb on + strandat 204.612 kb on - strandat 204.629 kb on - strandat 204.669 kb on + strandat 204.670 kb on - strandat 204.671 kb on + strandat 204.672 kb on - strandat 204.693 kb on + strandat 204.693 kb on + strandat 204.693 kb on + strandat 204.694 kb on - strandat 204.736 kb on - strand, within BACOVA_01982at 204.738 kb on - strand, within BACOVA_01982at 204.769 kb on - strand, within BACOVA_01982at 204.804 kb on + strandat 204.804 kb on + strandat 204.836 kb on + strandat 204.836 kb on + strandat 204.836 kb on + strandat 204.837 kb on - strandat 204.837 kb on - strandat 204.837 kb on - strandat 204.903 kb on + strand, within BACOVA_01983at 204.904 kb on - strand, within BACOVA_01983at 204.964 kb on - strand, within BACOVA_01983at 205.055 kb on - strand, within BACOVA_01983at 205.093 kb on - strand, within BACOVA_01983at 205.123 kb on + strand, within BACOVA_01983at 205.123 kb on + strand, within BACOVA_01983at 205.124 kb on - strand, within BACOVA_01983at 205.166 kb on - strand, within BACOVA_01983at 205.194 kb on + strand, within BACOVA_01983at 205.260 kb on + strand, within BACOVA_01983at 205.283 kb on + strand, within BACOVA_01983at 205.284 kb on - strand, within BACOVA_01983at 205.284 kb on - strand, within BACOVA_01983at 205.284 kb on - strand, within BACOVA_01983at 205.434 kb on - strandat 205.457 kb on + strandat 205.519 kb on + strandat 205.529 kb on - strandat 205.529 kb on - strandat 205.532 kb on + strandat 205.533 kb on - strandat 205.533 kb on - strandat 205.534 kb on + strandat 205.563 kb on - strandat 205.593 kb on - strandat 205.598 kb on + strandat 205.602 kb on + strandat 205.603 kb on - strandat 205.633 kb on - strandat 205.651 kb on + strandat 205.672 kb on + strandat 205.754 kb on + strandat 205.759 kb on - strandat 205.759 kb on - strandat 205.767 kb on + strandat 205.769 kb on + strandat 205.770 kb on - strandat 205.772 kb on - strandat 205.791 kb on - strandat 205.797 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corncob 2.5 mg/ml (C)
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204,508 - +0.9
204,563 - -0.2
204,568 - -0.0
204,568 - -0.7
204,570 + +0.5
204,570 + -0.9
204,577 + +0.0
204,578 - -0.1
204,578 - +1.5
204,609 + +0.9
204,611 + -1.2
204,612 - -0.3
204,629 - -1.5
204,669 + -0.2
204,670 - +1.5
204,671 + -1.1
204,672 - -1.5
204,693 + +0.1
204,693 + -0.3
204,693 + +0.0
204,694 - +0.0
204,736 - BACOVA_01982 0.43 -0.6
204,738 - BACOVA_01982 0.44 -0.1
204,769 - BACOVA_01982 0.73 -0.2
204,804 + +0.9
204,804 + +0.9
204,836 + +0.1
204,836 + +0.9
204,836 + +0.2
204,837 - +0.6
204,837 - +0.7
204,837 - -0.7
204,903 + BACOVA_01983 0.13 -0.8
204,904 - BACOVA_01983 0.13 +0.9
204,964 - BACOVA_01983 0.23 +0.6
205,055 - BACOVA_01983 0.38 +0.3
205,093 - BACOVA_01983 0.44 +1.0
205,123 + BACOVA_01983 0.49 -0.2
205,123 + BACOVA_01983 0.49 -0.9
205,124 - BACOVA_01983 0.49 +0.1
205,166 - BACOVA_01983 0.56 -0.9
205,194 + BACOVA_01983 0.60 +1.1
205,260 + BACOVA_01983 0.71 +2.0
205,283 + BACOVA_01983 0.75 -1.2
205,284 - BACOVA_01983 0.75 -0.1
205,284 - BACOVA_01983 0.75 +0.0
205,284 - BACOVA_01983 0.75 -1.7
205,434 - +0.3
205,457 + +0.5
205,519 + -1.1
205,529 - -0.2
205,529 - -0.3
205,532 + +0.9
205,533 - -1.1
205,533 - -0.2
205,534 + +0.4
205,563 - +0.2
205,593 - +0.7
205,598 + -2.1
205,602 + +0.6
205,603 - +0.1
205,633 - -0.1
205,651 + +0.1
205,672 + -0.4
205,754 + +0.3
205,759 - -1.7
205,759 - +0.3
205,767 + +2.3
205,769 + -0.1
205,770 - +0.7
205,772 - -0.5
205,791 - +0.5
205,797 + +0.6

Or see this region's nucleotide sequence