Experiment: Xylan from corncob 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01679 and BACOVA_01680 are separated by 11 nucleotides BACOVA_01680 and BACOVA_01681 are separated by 54 nucleotides BACOVA_01681 and BACOVA_01682 are separated by 256 nucleotides BACOVA_01682 and BACOVA_01683 are separated by 127 nucleotides
BACOVA_01679: BACOVA_01679 - pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein, at 95,648 to 96,730
_01679
BACOVA_01680: BACOVA_01680 - 4Fe-4S binding domain protein, at 96,742 to 96,969
_01680
BACOVA_01681: BACOVA_01681 - tetratricopeptide repeat protein, at 97,024 to 97,305
_01681
BACOVA_01682: BACOVA_01682 - RNA polymerase sigma-70 factor, at 97,562 to 98,110
_01682
BACOVA_01683: BACOVA_01683 - sigma factor regulatory protein, FecR/PupR family, at 98,238 to 99,215
_01683
Position (kb) 97
98 Strain fitness (log2 ratio) -2
-1
0
1 at 96.982 kb on - strand at 96.985 kb on - strand at 96.990 kb on - strand at 97.013 kb on - strand at 97.015 kb on - strand at 97.015 kb on - strand at 97.015 kb on - strand at 97.015 kb on - strand at 97.026 kb on - strand at 97.067 kb on - strand, within BACOVA_01681 at 97.067 kb on - strand, within BACOVA_01681 at 97.122 kb on - strand, within BACOVA_01681 at 97.128 kb on - strand, within BACOVA_01681 at 97.286 kb on - strand at 97.342 kb on - strand at 97.342 kb on - strand at 97.353 kb on - strand at 97.353 kb on - strand at 97.357 kb on - strand at 97.357 kb on - strand at 97.407 kb on - strand at 97.411 kb on + strand at 97.412 kb on - strand at 97.417 kb on + strand at 97.418 kb on - strand at 97.421 kb on + strand at 97.462 kb on + strand at 97.473 kb on + strand at 97.473 kb on + strand at 97.497 kb on + strand at 97.510 kb on - strand at 97.530 kb on - strand at 97.535 kb on + strand at 97.587 kb on + strand at 97.592 kb on - strand at 97.607 kb on + strand at 97.608 kb on - strand at 97.610 kb on - strand at 97.616 kb on + strand at 97.617 kb on - strand, within BACOVA_01682 at 97.625 kb on - strand, within BACOVA_01682 at 97.625 kb on - strand, within BACOVA_01682 at 97.625 kb on - strand, within BACOVA_01682 at 97.651 kb on + strand, within BACOVA_01682 at 97.748 kb on - strand, within BACOVA_01682 at 97.749 kb on + strand, within BACOVA_01682 at 97.777 kb on + strand, within BACOVA_01682 at 97.777 kb on + strand, within BACOVA_01682 at 97.779 kb on + strand, within BACOVA_01682 at 97.795 kb on + strand, within BACOVA_01682 at 97.831 kb on + strand, within BACOVA_01682 at 97.845 kb on + strand, within BACOVA_01682 at 97.900 kb on - strand, within BACOVA_01682 at 97.962 kb on + strand, within BACOVA_01682 at 97.963 kb on - strand, within BACOVA_01682 at 97.970 kb on - strand, within BACOVA_01682 at 97.981 kb on + strand, within BACOVA_01682 at 98.040 kb on + strand, within BACOVA_01682 at 98.094 kb on + strand at 98.094 kb on + strand at 98.095 kb on - strand at 98.179 kb on + strand at 98.200 kb on + strand at 98.201 kb on - strand at 98.207 kb on - strand at 98.225 kb on + strand at 98.226 kb on - strand at 98.229 kb on + strand at 98.229 kb on + strand at 98.230 kb on - strand at 98.230 kb on - strand at 98.230 kb on - strand at 98.230 kb on - strand at 98.233 kb on + strand at 98.235 kb on + strand at 98.238 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corncob 2.5 mg/ml (C) remove 96,982 - -0.6 96,985 - +0.3 96,990 - +0.0 97,013 - +0.4 97,015 - -0.4 97,015 - -1.1 97,015 - +0.8 97,015 - +0.3 97,026 - -0.6 97,067 - BACOVA_01681 0.15 +1.0 97,067 - BACOVA_01681 0.15 +1.6 97,122 - BACOVA_01681 0.35 +0.4 97,128 - BACOVA_01681 0.37 +0.3 97,286 - +0.9 97,342 - -0.8 97,342 - -0.0 97,353 - +0.5 97,353 - +0.4 97,357 - +0.3 97,357 - -0.1 97,407 - +0.6 97,411 + -0.7 97,412 - +0.4 97,417 + -0.4 97,418 - -1.8 97,421 + -0.8 97,462 + -0.1 97,473 + -1.2 97,473 + +0.5 97,497 + -0.4 97,510 - -0.4 97,530 - -0.5 97,535 + +0.1 97,587 + -0.0 97,592 - +0.6 97,607 + -0.3 97,608 - +0.1 97,610 - -0.7 97,616 + +0.4 97,617 - BACOVA_01682 0.10 -0.4 97,625 - BACOVA_01682 0.11 +0.3 97,625 - BACOVA_01682 0.11 +1.5 97,625 - BACOVA_01682 0.11 +0.6 97,651 + BACOVA_01682 0.16 -1.1 97,748 - BACOVA_01682 0.34 +0.2 97,749 + BACOVA_01682 0.34 -1.4 97,777 + BACOVA_01682 0.39 -0.3 97,777 + BACOVA_01682 0.39 +0.8 97,779 + BACOVA_01682 0.40 -0.8 97,795 + BACOVA_01682 0.42 +0.6 97,831 + BACOVA_01682 0.49 -1.6 97,845 + BACOVA_01682 0.52 -0.4 97,900 - BACOVA_01682 0.62 -1.1 97,962 + BACOVA_01682 0.73 -1.8 97,963 - BACOVA_01682 0.73 -1.4 97,970 - BACOVA_01682 0.74 -0.9 97,981 + BACOVA_01682 0.76 -0.4 98,040 + BACOVA_01682 0.87 +0.8 98,094 + +0.0 98,094 + -0.8 98,095 - -1.1 98,179 + +0.9 98,200 + -1.4 98,201 - -0.6 98,207 - -1.1 98,225 + +0.0 98,226 - +0.3 98,229 + -1.9 98,229 + -0.2 98,230 - -0.4 98,230 - -0.3 98,230 - -0.4 98,230 - +0.5 98,233 + -0.3 98,235 + -0.2 98,238 - -0.5
Or see this region's nucleotide sequence