Experiment: Xylan from corncob 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00540 and BACOVA_00541 are separated by 126 nucleotides BACOVA_00541 and BACOVA_00542 are separated by 143 nucleotides BACOVA_00542 and BACOVA_00543 are separated by 17 nucleotides BACOVA_00543 and BACOVA_00544 are separated by 191 nucleotides BACOVA_00544 and BACOVA_00545 overlap by 4 nucleotides
BACOVA_00540: BACOVA_00540 - hypothetical protein, at 37,694 to 40,675
_00540
BACOVA_00541: BACOVA_00541 - hypothetical protein, at 40,802 to 40,903
_00541
BACOVA_00542: BACOVA_00542 - N-acetylmuramoyl-L-alanine amidase, at 41,047 to 41,547
_00542
BACOVA_00543: BACOVA_00543 - putative DNA-binding protein, at 41,565 to 42,080
_00543
BACOVA_00544: BACOVA_00544 - hypothetical protein, at 42,272 to 42,379
_00544
BACOVA_00545: BACOVA_00545 - hypothetical protein, at 42,376 to 42,621
_00545
Position (kb) 41
42 Strain fitness (log2 ratio) -2
-1
0
1
2 at 40.242 kb on + strand, within BACOVA_00540 at 40.251 kb on + strand, within BACOVA_00540 at 40.251 kb on + strand, within BACOVA_00540 at 40.276 kb on + strand, within BACOVA_00540 at 40.300 kb on - strand, within BACOVA_00540 at 40.320 kb on + strand, within BACOVA_00540 at 40.320 kb on + strand, within BACOVA_00540 at 40.321 kb on - strand, within BACOVA_00540 at 40.321 kb on - strand, within BACOVA_00540 at 40.321 kb on - strand, within BACOVA_00540 at 40.321 kb on - strand, within BACOVA_00540 at 40.341 kb on + strand, within BACOVA_00540 at 40.373 kb on + strand, within BACOVA_00540 at 40.452 kb on + strand at 40.452 kb on + strand at 40.497 kb on + strand at 40.497 kb on + strand at 40.498 kb on - strand at 40.498 kb on - strand at 40.498 kb on - strand at 40.500 kb on - strand at 40.501 kb on + strand at 40.502 kb on - strand at 40.554 kb on + strand at 40.576 kb on + strand at 40.576 kb on + strand at 40.617 kb on + strand at 40.621 kb on + strand at 40.621 kb on + strand at 40.621 kb on + strand at 40.622 kb on - strand at 40.624 kb on + strand at 40.624 kb on + strand at 40.634 kb on + strand at 40.661 kb on - strand at 40.661 kb on - strand at 40.661 kb on - strand at 40.664 kb on + strand at 40.678 kb on - strand at 40.777 kb on + strand at 40.778 kb on - strand at 40.960 kb on + strand at 40.964 kb on + strand at 40.970 kb on + strand at 41.158 kb on + strand, within BACOVA_00542 at 41.298 kb on + strand, within BACOVA_00542 at 41.387 kb on + strand, within BACOVA_00542 at 41.390 kb on + strand, within BACOVA_00542 at 41.514 kb on + strand at 41.514 kb on + strand at 41.566 kb on + strand at 41.789 kb on + strand, within BACOVA_00543 at 41.982 kb on + strand, within BACOVA_00543 at 42.208 kb on + strand at 42.275 kb on + strand at 42.309 kb on + strand, within BACOVA_00544 at 42.427 kb on + strand, within BACOVA_00545 at 42.452 kb on + strand, within BACOVA_00545 at 42.468 kb on - strand, within BACOVA_00545 at 42.478 kb on + strand, within BACOVA_00545 at 42.513 kb on + strand, within BACOVA_00545 at 42.524 kb on + strand, within BACOVA_00545 at 42.525 kb on - strand, within BACOVA_00545
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corncob 2.5 mg/ml (C) remove 40,242 + BACOVA_00540 0.85 -0.1 40,251 + BACOVA_00540 0.86 -0.3 40,251 + BACOVA_00540 0.86 -0.5 40,276 + BACOVA_00540 0.87 -0.5 40,300 - BACOVA_00540 0.87 +0.5 40,320 + BACOVA_00540 0.88 -1.9 40,320 + BACOVA_00540 0.88 -0.0 40,321 - BACOVA_00540 0.88 -0.1 40,321 - BACOVA_00540 0.88 -0.4 40,321 - BACOVA_00540 0.88 -0.5 40,321 - BACOVA_00540 0.88 -1.0 40,341 + BACOVA_00540 0.89 +1.2 40,373 + BACOVA_00540 0.90 -0.5 40,452 + +0.8 40,452 + +0.2 40,497 + -0.7 40,497 + -0.8 40,498 - +0.4 40,498 - -1.1 40,498 - -0.6 40,500 - -0.5 40,501 + +0.2 40,502 - +1.1 40,554 + -0.9 40,576 + +0.8 40,576 + +0.4 40,617 + +0.4 40,621 + +0.8 40,621 + +1.2 40,621 + -0.8 40,622 - +1.2 40,624 + -1.6 40,624 + -0.6 40,634 + -0.2 40,661 - +1.1 40,661 - -0.7 40,661 - -0.2 40,664 + -0.8 40,678 - +0.5 40,777 + +1.4 40,778 - -0.4 40,960 + -0.6 40,964 + -0.2 40,970 + +0.9 41,158 + BACOVA_00542 0.22 -1.6 41,298 + BACOVA_00542 0.50 +0.2 41,387 + BACOVA_00542 0.68 -2.1 41,390 + BACOVA_00542 0.68 +0.2 41,514 + +2.1 41,514 + -0.7 41,566 + +0.4 41,789 + BACOVA_00543 0.43 +0.5 41,982 + BACOVA_00543 0.81 +1.1 42,208 + -0.4 42,275 + +0.2 42,309 + BACOVA_00544 0.34 +0.9 42,427 + BACOVA_00545 0.21 -0.4 42,452 + BACOVA_00545 0.31 +0.3 42,468 - BACOVA_00545 0.37 -0.4 42,478 + BACOVA_00545 0.41 -0.5 42,513 + BACOVA_00545 0.56 +0.5 42,524 + BACOVA_00545 0.60 -1.1 42,525 - BACOVA_00545 0.61 -0.2
Or see this region's nucleotide sequence