Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05160

Experiment: b-glucan from Barley 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_05158 and BACOVA_05160 are separated by 205 nucleotidesBACOVA_05160 and BACOVA_05161 are separated by 1 nucleotides BACOVA_05158: BACOVA_05158 - hypothetical protein, at 638,693 to 640,900 _05158 BACOVA_05160: BACOVA_05160 - reverse transcriptase (RNA-dependent DNA polymerase), at 641,106 to 642,236 _05160 BACOVA_05161: BACOVA_05161 - hypothetical protein, at 642,238 to 648,195 _05161 Position (kb) 641 642 643Strain fitness (log2 ratio) -2 -1 0 1 2at 640.108 kb on + strand, within BACOVA_05158at 640.118 kb on + strand, within BACOVA_05158at 640.119 kb on - strand, within BACOVA_05158at 640.119 kb on - strand, within BACOVA_05158at 640.146 kb on + strand, within BACOVA_05158at 640.234 kb on + strand, within BACOVA_05158at 640.262 kb on - strand, within BACOVA_05158at 640.277 kb on + strand, within BACOVA_05158at 640.278 kb on - strand, within BACOVA_05158at 640.278 kb on - strand, within BACOVA_05158at 640.279 kb on + strand, within BACOVA_05158at 640.325 kb on + strand, within BACOVA_05158at 640.326 kb on - strand, within BACOVA_05158at 640.329 kb on - strand, within BACOVA_05158at 640.331 kb on + strand, within BACOVA_05158at 640.354 kb on + strand, within BACOVA_05158at 640.371 kb on - strand, within BACOVA_05158at 640.403 kb on - strand, within BACOVA_05158at 640.434 kb on - strand, within BACOVA_05158at 640.434 kb on - strand, within BACOVA_05158at 640.434 kb on - strand, within BACOVA_05158at 640.444 kb on - strand, within BACOVA_05158at 640.444 kb on - strand, within BACOVA_05158at 640.486 kb on + strand, within BACOVA_05158at 640.538 kb on + strand, within BACOVA_05158at 640.570 kb on + strand, within BACOVA_05158at 640.608 kb on + strand, within BACOVA_05158at 640.634 kb on + strand, within BACOVA_05158at 640.634 kb on + strand, within BACOVA_05158at 640.634 kb on + strand, within BACOVA_05158at 640.637 kb on - strand, within BACOVA_05158at 640.637 kb on - strand, within BACOVA_05158at 640.657 kb on - strand, within BACOVA_05158at 640.674 kb on - strand, within BACOVA_05158at 640.713 kb on - strandat 640.713 kb on - strandat 640.738 kb on + strandat 640.738 kb on + strandat 640.739 kb on - strandat 640.742 kb on + strandat 640.743 kb on - strandat 640.759 kb on + strandat 640.789 kb on - strandat 640.789 kb on - strandat 640.837 kb on + strandat 640.871 kb on - strandat 640.947 kb on + strandat 640.947 kb on + strandat 640.949 kb on + strandat 640.972 kb on + strandat 640.999 kb on + strandat 641.000 kb on - strandat 641.000 kb on - strandat 641.009 kb on + strandat 641.024 kb on + strandat 641.031 kb on + strandat 641.039 kb on - strandat 641.043 kb on - strandat 641.043 kb on - strandat 641.091 kb on - strandat 641.091 kb on - strandat 641.098 kb on + strandat 641.099 kb on - strandat 641.100 kb on + strandat 641.100 kb on + strandat 641.100 kb on + strandat 641.101 kb on - strandat 641.101 kb on - strandat 641.120 kb on - strandat 641.123 kb on - strandat 641.135 kb on + strandat 641.154 kb on + strandat 641.154 kb on + strandat 641.155 kb on - strandat 641.156 kb on + strandat 641.157 kb on - strandat 641.219 kb on + strand, within BACOVA_05160at 641.234 kb on + strand, within BACOVA_05160at 641.234 kb on + strand, within BACOVA_05160at 641.235 kb on - strand, within BACOVA_05160at 641.238 kb on - strand, within BACOVA_05160at 641.242 kb on + strand, within BACOVA_05160at 641.267 kb on + strand, within BACOVA_05160at 641.268 kb on - strand, within BACOVA_05160at 641.305 kb on - strand, within BACOVA_05160at 641.495 kb on + strand, within BACOVA_05160at 641.496 kb on - strand, within BACOVA_05160at 641.496 kb on - strand, within BACOVA_05160at 641.507 kb on - strand, within BACOVA_05160at 641.507 kb on - strand, within BACOVA_05160at 641.618 kb on + strand, within BACOVA_05160at 641.700 kb on - strand, within BACOVA_05160at 641.767 kb on + strand, within BACOVA_05160at 641.774 kb on + strand, within BACOVA_05160at 641.835 kb on + strand, within BACOVA_05160at 641.835 kb on + strand, within BACOVA_05160at 641.835 kb on + strand, within BACOVA_05160at 641.945 kb on + strand, within BACOVA_05160at 641.946 kb on - strand, within BACOVA_05160at 641.946 kb on - strand, within BACOVA_05160at 641.961 kb on - strand, within BACOVA_05160at 641.984 kb on + strand, within BACOVA_05160at 641.985 kb on - strand, within BACOVA_05160at 641.988 kb on - strand, within BACOVA_05160at 641.995 kb on + strand, within BACOVA_05160at 641.995 kb on + strand, within BACOVA_05160at 641.995 kb on + strand, within BACOVA_05160at 642.063 kb on + strand, within BACOVA_05160at 642.156 kb on + strandat 642.169 kb on + strandat 642.169 kb on + strandat 642.212 kb on + strandat 642.231 kb on + strandat 642.235 kb on - strandat 642.240 kb on - strandat 642.240 kb on - strandat 642.268 kb on + strandat 642.278 kb on + strandat 642.326 kb on - strandat 642.391 kb on + strandat 642.413 kb on - strandat 642.448 kb on + strandat 642.449 kb on - strandat 642.449 kb on - strandat 642.483 kb on - strandat 642.491 kb on + strandat 642.492 kb on - strandat 642.540 kb on - strandat 642.551 kb on + strandat 642.580 kb on + strandat 642.581 kb on - strandat 642.922 kb on - strand, within BACOVA_05161at 642.984 kb on + strand, within BACOVA_05161at 642.985 kb on - strand, within BACOVA_05161at 642.991 kb on + strand, within BACOVA_05161at 642.991 kb on + strand, within BACOVA_05161at 642.991 kb on + strand, within BACOVA_05161at 642.992 kb on - strand, within BACOVA_05161at 643.068 kb on + strand, within BACOVA_05161at 643.134 kb on + strand, within BACOVA_05161at 643.149 kb on + strand, within BACOVA_05161at 643.177 kb on + strand, within BACOVA_05161at 643.177 kb on + strand, within BACOVA_05161at 643.177 kb on + strand, within BACOVA_05161at 643.178 kb on - strand, within BACOVA_05161at 643.178 kb on - strand, within BACOVA_05161at 643.178 kb on - strand, within BACOVA_05161at 643.183 kb on + strand, within BACOVA_05161at 643.184 kb on - strand, within BACOVA_05161at 643.184 kb on - strand, within BACOVA_05161at 643.204 kb on + strand, within BACOVA_05161at 643.204 kb on + strand, within BACOVA_05161at 643.205 kb on - strand, within BACOVA_05161at 643.205 kb on - strand, within BACOVA_05161at 643.213 kb on - strand, within BACOVA_05161

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction b-glucan from Barley 2.5 mg/ml (C)
remove
640,108 + BACOVA_05158 0.64 -0.7
640,118 + BACOVA_05158 0.65 -2.7
640,119 - BACOVA_05158 0.65 +0.3
640,119 - BACOVA_05158 0.65 -0.6
640,146 + BACOVA_05158 0.66 -0.2
640,234 + BACOVA_05158 0.70 +0.2
640,262 - BACOVA_05158 0.71 +0.7
640,277 + BACOVA_05158 0.72 -1.2
640,278 - BACOVA_05158 0.72 -0.9
640,278 - BACOVA_05158 0.72 -1.4
640,279 + BACOVA_05158 0.72 +1.8
640,325 + BACOVA_05158 0.74 -0.5
640,326 - BACOVA_05158 0.74 +0.2
640,329 - BACOVA_05158 0.74 -0.9
640,331 + BACOVA_05158 0.74 -1.3
640,354 + BACOVA_05158 0.75 +0.2
640,371 - BACOVA_05158 0.76 +0.0
640,403 - BACOVA_05158 0.77 -0.3
640,434 - BACOVA_05158 0.79 +0.8
640,434 - BACOVA_05158 0.79 -0.9
640,434 - BACOVA_05158 0.79 -1.6
640,444 - BACOVA_05158 0.79 -0.4
640,444 - BACOVA_05158 0.79 +0.1
640,486 + BACOVA_05158 0.81 -0.6
640,538 + BACOVA_05158 0.84 -1.9
640,570 + BACOVA_05158 0.85 +0.6
640,608 + BACOVA_05158 0.87 -0.2
640,634 + BACOVA_05158 0.88 -1.2
640,634 + BACOVA_05158 0.88 -1.2
640,634 + BACOVA_05158 0.88 -1.1
640,637 - BACOVA_05158 0.88 +1.6
640,637 - BACOVA_05158 0.88 +1.8
640,657 - BACOVA_05158 0.89 -0.7
640,674 - BACOVA_05158 0.90 +0.8
640,713 - -0.4
640,713 - +0.8
640,738 + -1.1
640,738 + -0.2
640,739 - -0.2
640,742 + +1.0
640,743 - -2.3
640,759 + -0.7
640,789 - +0.1
640,789 - -0.2
640,837 + +0.3
640,871 - +0.9
640,947 + +0.6
640,947 + -1.5
640,949 + -0.8
640,972 + +0.4
640,999 + +0.2
641,000 - +0.2
641,000 - -1.0
641,009 + -0.4
641,024 + +2.3
641,031 + -0.8
641,039 - +2.3
641,043 - -0.9
641,043 - -0.2
641,091 - -2.5
641,091 - +0.2
641,098 + -1.3
641,099 - -1.9
641,100 + -0.3
641,100 + +0.5
641,100 + -1.2
641,101 - -0.5
641,101 - +1.7
641,120 - +0.9
641,123 - +0.4
641,135 + -0.2
641,154 + -0.4
641,154 + -0.9
641,155 - +0.8
641,156 + -1.6
641,157 - +0.8
641,219 + BACOVA_05160 0.10 -1.6
641,234 + BACOVA_05160 0.11 +2.2
641,234 + BACOVA_05160 0.11 -0.6
641,235 - BACOVA_05160 0.11 +0.6
641,238 - BACOVA_05160 0.12 -0.3
641,242 + BACOVA_05160 0.12 -0.4
641,267 + BACOVA_05160 0.14 +2.4
641,268 - BACOVA_05160 0.14 -0.4
641,305 - BACOVA_05160 0.18 -2.5
641,495 + BACOVA_05160 0.34 -0.6
641,496 - BACOVA_05160 0.34 +0.3
641,496 - BACOVA_05160 0.34 -0.7
641,507 - BACOVA_05160 0.35 +0.9
641,507 - BACOVA_05160 0.35 +0.4
641,618 + BACOVA_05160 0.45 +0.2
641,700 - BACOVA_05160 0.53 -0.6
641,767 + BACOVA_05160 0.58 -1.2
641,774 + BACOVA_05160 0.59 +0.8
641,835 + BACOVA_05160 0.64 -0.2
641,835 + BACOVA_05160 0.64 -0.2
641,835 + BACOVA_05160 0.64 -1.0
641,945 + BACOVA_05160 0.74 -0.2
641,946 - BACOVA_05160 0.74 -1.7
641,946 - BACOVA_05160 0.74 -0.7
641,961 - BACOVA_05160 0.76 +0.2
641,984 + BACOVA_05160 0.78 -2.6
641,985 - BACOVA_05160 0.78 -0.2
641,988 - BACOVA_05160 0.78 -0.1
641,995 + BACOVA_05160 0.79 +1.6
641,995 + BACOVA_05160 0.79 +1.3
641,995 + BACOVA_05160 0.79 -0.9
642,063 + BACOVA_05160 0.85 +1.7
642,156 + +0.1
642,169 + -0.2
642,169 + +0.8
642,212 + +0.7
642,231 + +0.5
642,235 - -0.3
642,240 - -0.5
642,240 - -0.1
642,268 + -1.6
642,278 + +1.1
642,326 - -1.4
642,391 + +1.7
642,413 - -0.9
642,448 + -0.2
642,449 - +2.4
642,449 - -0.3
642,483 - +0.7
642,491 + -0.5
642,492 - -1.2
642,540 - +0.1
642,551 + -1.2
642,580 + -0.0
642,581 - -0.6
642,922 - BACOVA_05161 0.11 -1.0
642,984 + BACOVA_05161 0.13 +0.6
642,985 - BACOVA_05161 0.13 +0.0
642,991 + BACOVA_05161 0.13 +0.8
642,991 + BACOVA_05161 0.13 -1.4
642,991 + BACOVA_05161 0.13 -1.6
642,992 - BACOVA_05161 0.13 +0.2
643,068 + BACOVA_05161 0.14 -0.5
643,134 + BACOVA_05161 0.15 +1.4
643,149 + BACOVA_05161 0.15 -0.8
643,177 + BACOVA_05161 0.16 +0.1
643,177 + BACOVA_05161 0.16 -0.0
643,177 + BACOVA_05161 0.16 -0.1
643,178 - BACOVA_05161 0.16 +1.0
643,178 - BACOVA_05161 0.16 +0.8
643,178 - BACOVA_05161 0.16 +0.1
643,183 + BACOVA_05161 0.16 -1.3
643,184 - BACOVA_05161 0.16 -0.4
643,184 - BACOVA_05161 0.16 +1.5
643,204 + BACOVA_05161 0.16 -2.6
643,204 + BACOVA_05161 0.16 -0.4
643,205 - BACOVA_05161 0.16 +2.4
643,205 - BACOVA_05161 0.16 -2.1
643,213 - BACOVA_05161 0.16 -0.0

Or see this region's nucleotide sequence