Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04889

Experiment: b-glucan from Barley 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04888 and BACOVA_04889 are separated by 1 nucleotidesBACOVA_04889 and BACOVA_04890 are separated by 167 nucleotides BACOVA_04888: BACOVA_04888 - TrkA N-terminal domain protein, at 282,376 to 283,716 _04888 BACOVA_04889: BACOVA_04889 - 1-deoxy-D-xylulose-5-phosphate synthase, at 283,718 to 285,622 _04889 BACOVA_04890: BACOVA_04890 - GSCFA family protein, at 285,790 to 286,809 _04890 Position (kb) 283 284 285 286Strain fitness (log2 ratio) -2 -1 0 1 2at 282.719 kb on + strand, within BACOVA_04888at 282.886 kb on - strand, within BACOVA_04888at 282.907 kb on + strand, within BACOVA_04888at 282.966 kb on - strand, within BACOVA_04888at 282.977 kb on + strand, within BACOVA_04888at 282.978 kb on - strand, within BACOVA_04888at 282.978 kb on - strand, within BACOVA_04888at 282.978 kb on - strand, within BACOVA_04888at 282.978 kb on - strand, within BACOVA_04888at 283.021 kb on + strand, within BACOVA_04888at 283.021 kb on + strand, within BACOVA_04888at 283.022 kb on - strand, within BACOVA_04888at 283.030 kb on + strand, within BACOVA_04888at 283.062 kb on + strand, within BACOVA_04888at 283.066 kb on + strand, within BACOVA_04888at 283.066 kb on + strand, within BACOVA_04888at 283.066 kb on + strand, within BACOVA_04888at 283.067 kb on - strand, within BACOVA_04888at 283.067 kb on - strand, within BACOVA_04888at 283.069 kb on - strand, within BACOVA_04888at 283.069 kb on - strand, within BACOVA_04888at 283.070 kb on + strand, within BACOVA_04888at 283.070 kb on + strand, within BACOVA_04888at 283.071 kb on - strand, within BACOVA_04888at 283.071 kb on - strand, within BACOVA_04888at 283.079 kb on + strand, within BACOVA_04888at 283.079 kb on + strand, within BACOVA_04888at 283.107 kb on + strand, within BACOVA_04888at 283.108 kb on - strand, within BACOVA_04888at 283.120 kb on - strand, within BACOVA_04888at 283.174 kb on + strand, within BACOVA_04888at 283.175 kb on - strand, within BACOVA_04888at 283.175 kb on - strand, within BACOVA_04888at 283.216 kb on + strand, within BACOVA_04888at 283.219 kb on - strand, within BACOVA_04888at 283.366 kb on + strand, within BACOVA_04888at 283.415 kb on + strand, within BACOVA_04888at 283.415 kb on + strand, within BACOVA_04888at 283.415 kb on + strand, within BACOVA_04888at 283.415 kb on + strand, within BACOVA_04888at 283.416 kb on - strand, within BACOVA_04888at 283.458 kb on + strand, within BACOVA_04888at 283.459 kb on - strand, within BACOVA_04888at 283.467 kb on + strand, within BACOVA_04888at 283.468 kb on - strand, within BACOVA_04888at 283.610 kb on - strandat 283.638 kb on + strandat 283.641 kb on + strandat 283.642 kb on - strandat 283.685 kb on - strandat 283.726 kb on + strandat 285.799 kb on - strandat 285.819 kb on + strandat 285.839 kb on + strandat 285.839 kb on + strandat 285.840 kb on - strandat 285.846 kb on - strandat 285.929 kb on + strand, within BACOVA_04890at 285.976 kb on + strand, within BACOVA_04890at 286.016 kb on + strand, within BACOVA_04890at 286.017 kb on - strand, within BACOVA_04890at 286.023 kb on + strand, within BACOVA_04890at 286.030 kb on + strand, within BACOVA_04890at 286.031 kb on - strand, within BACOVA_04890at 286.205 kb on - strand, within BACOVA_04890at 286.211 kb on - strand, within BACOVA_04890at 286.238 kb on + strand, within BACOVA_04890at 286.239 kb on - strand, within BACOVA_04890at 286.242 kb on + strand, within BACOVA_04890at 286.305 kb on - strand, within BACOVA_04890at 286.312 kb on + strand, within BACOVA_04890at 286.313 kb on - strand, within BACOVA_04890at 286.315 kb on - strand, within BACOVA_04890at 286.315 kb on - strand, within BACOVA_04890at 286.315 kb on - strand, within BACOVA_04890at 286.368 kb on + strand, within BACOVA_04890at 286.369 kb on - strand, within BACOVA_04890at 286.369 kb on - strand, within BACOVA_04890at 286.391 kb on + strand, within BACOVA_04890at 286.496 kb on - strand, within BACOVA_04890

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Per-strain Table

Position Strand Gene LocusTag Fraction b-glucan from Barley 2.5 mg/ml (C)
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282,719 + BACOVA_04888 0.26 +0.8
282,886 - BACOVA_04888 0.38 +2.1
282,907 + BACOVA_04888 0.40 -0.5
282,966 - BACOVA_04888 0.44 -1.1
282,977 + BACOVA_04888 0.45 -1.1
282,978 - BACOVA_04888 0.45 -1.3
282,978 - BACOVA_04888 0.45 +0.3
282,978 - BACOVA_04888 0.45 +0.2
282,978 - BACOVA_04888 0.45 -0.8
283,021 + BACOVA_04888 0.48 -0.2
283,021 + BACOVA_04888 0.48 +1.0
283,022 - BACOVA_04888 0.48 +1.0
283,030 + BACOVA_04888 0.49 -1.6
283,062 + BACOVA_04888 0.51 -1.5
283,066 + BACOVA_04888 0.51 -0.0
283,066 + BACOVA_04888 0.51 -1.1
283,066 + BACOVA_04888 0.51 -0.3
283,067 - BACOVA_04888 0.52 +0.7
283,067 - BACOVA_04888 0.52 -2.4
283,069 - BACOVA_04888 0.52 +0.6
283,069 - BACOVA_04888 0.52 -1.0
283,070 + BACOVA_04888 0.52 +0.9
283,070 + BACOVA_04888 0.52 +0.0
283,071 - BACOVA_04888 0.52 -1.0
283,071 - BACOVA_04888 0.52 -0.3
283,079 + BACOVA_04888 0.52 +0.7
283,079 + BACOVA_04888 0.52 -1.0
283,107 + BACOVA_04888 0.55 -0.2
283,108 - BACOVA_04888 0.55 -0.2
283,120 - BACOVA_04888 0.55 +0.1
283,174 + BACOVA_04888 0.60 -2.0
283,175 - BACOVA_04888 0.60 -0.3
283,175 - BACOVA_04888 0.60 -0.1
283,216 + BACOVA_04888 0.63 +0.1
283,219 - BACOVA_04888 0.63 +0.7
283,366 + BACOVA_04888 0.74 +0.3
283,415 + BACOVA_04888 0.77 -1.0
283,415 + BACOVA_04888 0.77 -1.2
283,415 + BACOVA_04888 0.77 -1.0
283,415 + BACOVA_04888 0.77 -1.4
283,416 - BACOVA_04888 0.78 -1.0
283,458 + BACOVA_04888 0.81 +1.0
283,459 - BACOVA_04888 0.81 -0.7
283,467 + BACOVA_04888 0.81 -1.0
283,468 - BACOVA_04888 0.81 +0.9
283,610 - +0.1
283,638 + +0.3
283,641 + +0.3
283,642 - +1.3
283,685 - -0.3
283,726 + +0.2
285,799 - -0.3
285,819 + +0.1
285,839 + -0.8
285,839 + +0.7
285,840 - -1.3
285,846 - +0.6
285,929 + BACOVA_04890 0.14 +0.6
285,976 + BACOVA_04890 0.18 -0.4
286,016 + BACOVA_04890 0.22 -1.7
286,017 - BACOVA_04890 0.22 -0.1
286,023 + BACOVA_04890 0.23 +0.2
286,030 + BACOVA_04890 0.24 -0.2
286,031 - BACOVA_04890 0.24 +0.0
286,205 - BACOVA_04890 0.41 -0.1
286,211 - BACOVA_04890 0.41 -0.3
286,238 + BACOVA_04890 0.44 -0.0
286,239 - BACOVA_04890 0.44 -1.5
286,242 + BACOVA_04890 0.44 -0.8
286,305 - BACOVA_04890 0.50 +0.6
286,312 + BACOVA_04890 0.51 -0.7
286,313 - BACOVA_04890 0.51 -0.7
286,315 - BACOVA_04890 0.51 +0.0
286,315 - BACOVA_04890 0.51 -0.4
286,315 - BACOVA_04890 0.51 +0.6
286,368 + BACOVA_04890 0.57 -0.4
286,369 - BACOVA_04890 0.57 +0.6
286,369 - BACOVA_04890 0.57 +0.3
286,391 + BACOVA_04890 0.59 -1.1
286,496 - BACOVA_04890 0.69 +1.1

Or see this region's nucleotide sequence