Experiment: b-glucan from Barley 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04362 and BACOVA_04363 are separated by 298 nucleotides BACOVA_04363 and BACOVA_04364 are separated by 7 nucleotides BACOVA_04364 and BACOVA_04365 overlap by 4 nucleotides BACOVA_04365 and BACOVA_04366 overlap by 41 nucleotides BACOVA_04366 and BACOVA_04367 are separated by 160 nucleotides BACOVA_04367 and BACOVA_04368 are separated by 189 nucleotides
BACOVA_04362: BACOVA_04362 - TonB-linked outer membrane protein, SusC/RagA family, at 256,146 to 259,352
_04362
BACOVA_04363: BACOVA_04363 - hypothetical protein, at 259,651 to 260,199
_04363
BACOVA_04364: BACOVA_04364 - hypothetical protein, at 260,207 to 260,827
_04364
BACOVA_04365: BACOVA_04365 - hypothetical protein, at 260,824 to 260,973
_04365
BACOVA_04366: BACOVA_04366 - hypothetical protein, at 260,933 to 261,037
_04366
BACOVA_04367: BACOVA_04367 - hypothetical protein, at 261,198 to 261,446
_04367
BACOVA_04368: BACOVA_04368 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 261,636 to 263,618
_04368
Position (kb) 260
261 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 259.215 kb on + strand at 259.215 kb on + strand at 259.216 kb on - strand at 259.216 kb on - strand at 259.216 kb on - strand at 259.232 kb on + strand at 259.324 kb on - strand at 259.365 kb on + strand at 259.410 kb on + strand at 259.434 kb on + strand at 259.435 kb on - strand at 259.436 kb on + strand at 259.450 kb on - strand at 259.454 kb on - strand at 259.458 kb on - strand at 259.495 kb on - strand at 259.528 kb on + strand at 259.528 kb on + strand at 259.529 kb on - strand at 259.590 kb on - strand at 259.620 kb on - strand at 259.620 kb on - strand at 259.621 kb on + strand at 259.622 kb on - strand at 259.622 kb on - strand at 259.647 kb on + strand at 259.648 kb on - strand at 259.649 kb on + strand at 259.649 kb on + strand at 259.649 kb on + strand at 259.649 kb on + strand at 259.650 kb on - strand at 259.650 kb on - strand at 259.653 kb on - strand at 259.654 kb on + strand at 259.654 kb on + strand at 259.655 kb on - strand at 259.655 kb on - strand at 259.663 kb on + strand at 259.663 kb on + strand at 259.666 kb on - strand at 259.688 kb on + strand at 259.688 kb on + strand at 259.701 kb on + strand at 259.702 kb on - strand at 259.702 kb on - strand at 259.711 kb on + strand, within BACOVA_04363 at 259.892 kb on - strand, within BACOVA_04363 at 259.909 kb on - strand, within BACOVA_04363 at 259.909 kb on - strand, within BACOVA_04363 at 259.910 kb on + strand, within BACOVA_04363 at 259.926 kb on + strand, within BACOVA_04363 at 259.927 kb on - strand, within BACOVA_04363 at 260.037 kb on + strand, within BACOVA_04363 at 260.038 kb on - strand, within BACOVA_04363 at 260.052 kb on - strand, within BACOVA_04363 at 260.061 kb on + strand, within BACOVA_04363 at 260.066 kb on + strand, within BACOVA_04363 at 260.066 kb on + strand, within BACOVA_04363 at 260.067 kb on - strand, within BACOVA_04363 at 260.069 kb on - strand, within BACOVA_04363 at 260.069 kb on - strand, within BACOVA_04363 at 260.073 kb on + strand, within BACOVA_04363 at 260.073 kb on + strand, within BACOVA_04363 at 260.117 kb on + strand, within BACOVA_04363 at 260.216 kb on + strand at 260.220 kb on + strand at 260.220 kb on + strand at 260.221 kb on - strand at 260.221 kb on - strand at 260.227 kb on + strand at 260.231 kb on + strand at 260.260 kb on + strand at 260.267 kb on - strand at 260.273 kb on - strand, within BACOVA_04364 at 260.282 kb on + strand, within BACOVA_04364 at 260.282 kb on + strand, within BACOVA_04364 at 260.290 kb on + strand, within BACOVA_04364 at 260.290 kb on + strand, within BACOVA_04364 at 260.378 kb on + strand, within BACOVA_04364 at 260.435 kb on + strand, within BACOVA_04364 at 260.435 kb on + strand, within BACOVA_04364 at 260.451 kb on - strand, within BACOVA_04364 at 260.470 kb on + strand, within BACOVA_04364 at 260.489 kb on + strand, within BACOVA_04364 at 260.511 kb on - strand, within BACOVA_04364 at 260.515 kb on + strand, within BACOVA_04364 at 260.516 kb on - strand, within BACOVA_04364 at 260.518 kb on - strand, within BACOVA_04364 at 260.537 kb on + strand, within BACOVA_04364 at 260.542 kb on - strand, within BACOVA_04364 at 260.581 kb on + strand, within BACOVA_04364 at 260.581 kb on + strand, within BACOVA_04364 at 260.584 kb on + strand, within BACOVA_04364 at 260.595 kb on - strand, within BACOVA_04364 at 260.635 kb on + strand, within BACOVA_04364 at 260.635 kb on + strand, within BACOVA_04364 at 260.636 kb on - strand, within BACOVA_04364 at 260.706 kb on + strand, within BACOVA_04364 at 260.713 kb on + strand, within BACOVA_04364 at 260.713 kb on + strand, within BACOVA_04364 at 260.714 kb on - strand, within BACOVA_04364 at 260.717 kb on - strand, within BACOVA_04364 at 260.727 kb on - strand, within BACOVA_04364 at 260.811 kb on + strand at 260.811 kb on + strand at 260.811 kb on + strand at 260.812 kb on - strand at 260.812 kb on - strand at 260.814 kb on - strand at 260.829 kb on + strand at 260.863 kb on + strand, within BACOVA_04365 at 260.934 kb on + strand at 260.935 kb on - strand at 260.974 kb on + strand, within BACOVA_04366 at 260.975 kb on - strand, within BACOVA_04366 at 260.975 kb on - strand, within BACOVA_04366 at 261.001 kb on - strand, within BACOVA_04366 at 261.052 kb on + strand at 261.061 kb on - strand at 261.176 kb on + strand at 261.177 kb on - strand at 261.186 kb on + strand at 261.186 kb on + strand at 261.187 kb on - strand at 261.188 kb on + strand at 261.188 kb on + strand at 261.188 kb on + strand at 261.189 kb on - strand at 261.189 kb on - strand at 261.190 kb on + strand at 261.191 kb on - strand at 261.197 kb on - strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.217 kb on + strand at 261.219 kb on + strand at 261.254 kb on - strand, within BACOVA_04367 at 261.391 kb on + strand, within BACOVA_04367 at 261.392 kb on - strand, within BACOVA_04367 at 261.392 kb on - strand, within BACOVA_04367 at 261.473 kb on + strand at 261.570 kb on + strand at 261.570 kb on - strand at 261.571 kb on - strand at 261.575 kb on + strand at 261.595 kb on + strand at 261.596 kb on - strand at 261.597 kb on + strand at 261.622 kb on - strand at 261.624 kb on - strand at 261.647 kb on - strand at 261.647 kb on - strand at 261.697 kb on + strand at 261.698 kb on - strand at 261.809 kb on + strand at 261.809 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction b-glucan from Barley 2.5 mg/ml (C) remove 259,215 + +1.3 259,215 + -0.7 259,216 - +1.7 259,216 - -0.5 259,216 - -1.3 259,232 + -0.1 259,324 - +0.1 259,365 + -1.0 259,410 + -0.8 259,434 + +1.3 259,435 - +0.1 259,436 + +0.1 259,450 - +1.2 259,454 - +2.3 259,458 - -0.8 259,495 - -1.2 259,528 + -0.5 259,528 + -1.8 259,529 - -0.3 259,590 - -0.5 259,620 - -0.2 259,620 - +1.3 259,621 + +0.9 259,622 - +0.0 259,622 - -0.1 259,647 + +0.2 259,648 - +0.4 259,649 + -0.2 259,649 + +0.0 259,649 + +0.0 259,649 + +0.1 259,650 - +0.3 259,650 - -1.8 259,653 - -0.7 259,654 + -2.0 259,654 + +1.1 259,655 - +1.8 259,655 - -1.8 259,663 + -0.6 259,663 + -1.1 259,666 - -0.7 259,688 + -0.2 259,688 + -0.5 259,701 + +0.3 259,702 - -0.2 259,702 - -1.1 259,711 + BACOVA_04363 0.11 -0.2 259,892 - BACOVA_04363 0.44 -0.2 259,909 - BACOVA_04363 0.47 -0.5 259,909 - BACOVA_04363 0.47 -0.8 259,910 + BACOVA_04363 0.47 -0.5 259,926 + BACOVA_04363 0.50 -1.1 259,927 - BACOVA_04363 0.50 +1.8 260,037 + BACOVA_04363 0.70 -0.5 260,038 - BACOVA_04363 0.70 +0.5 260,052 - BACOVA_04363 0.73 -0.2 260,061 + BACOVA_04363 0.75 -1.2 260,066 + BACOVA_04363 0.76 -0.5 260,066 + BACOVA_04363 0.76 -1.6 260,067 - BACOVA_04363 0.76 +0.9 260,069 - BACOVA_04363 0.76 +0.7 260,069 - BACOVA_04363 0.76 -0.7 260,073 + BACOVA_04363 0.77 +0.3 260,073 + BACOVA_04363 0.77 +0.6 260,117 + BACOVA_04363 0.85 -2.1 260,216 + -1.6 260,220 + +1.3 260,220 + +0.6 260,221 - -1.5 260,221 - +1.0 260,227 + -0.3 260,231 + +0.0 260,260 + -0.4 260,267 - +1.3 260,273 - BACOVA_04364 0.11 -0.4 260,282 + BACOVA_04364 0.12 -0.7 260,282 + BACOVA_04364 0.12 -1.7 260,290 + BACOVA_04364 0.13 +2.2 260,290 + BACOVA_04364 0.13 -1.0 260,378 + BACOVA_04364 0.28 -0.9 260,435 + BACOVA_04364 0.37 -0.5 260,435 + BACOVA_04364 0.37 +1.9 260,451 - BACOVA_04364 0.39 +0.0 260,470 + BACOVA_04364 0.42 -1.2 260,489 + BACOVA_04364 0.45 +0.8 260,511 - BACOVA_04364 0.49 -1.1 260,515 + BACOVA_04364 0.50 -1.2 260,516 - BACOVA_04364 0.50 +0.3 260,518 - BACOVA_04364 0.50 +1.7 260,537 + BACOVA_04364 0.53 +0.0 260,542 - BACOVA_04364 0.54 -1.6 260,581 + BACOVA_04364 0.60 +0.6 260,581 + BACOVA_04364 0.60 -0.3 260,584 + BACOVA_04364 0.61 -1.4 260,595 - BACOVA_04364 0.62 -0.2 260,635 + BACOVA_04364 0.69 -0.9 260,635 + BACOVA_04364 0.69 -0.7 260,636 - BACOVA_04364 0.69 +0.3 260,706 + BACOVA_04364 0.80 +0.1 260,713 + BACOVA_04364 0.81 +0.8 260,713 + BACOVA_04364 0.81 +2.9 260,714 - BACOVA_04364 0.82 +1.3 260,717 - BACOVA_04364 0.82 +1.1 260,727 - BACOVA_04364 0.84 +0.1 260,811 + +0.0 260,811 + -0.7 260,811 + -1.4 260,812 - +0.7 260,812 - +0.8 260,814 - +0.3 260,829 + -0.7 260,863 + BACOVA_04365 0.26 -1.0 260,934 + -0.8 260,935 - -0.2 260,974 + BACOVA_04366 0.39 +0.5 260,975 - BACOVA_04366 0.40 +0.8 260,975 - BACOVA_04366 0.40 -0.7 261,001 - BACOVA_04366 0.65 -0.2 261,052 + +0.1 261,061 - -2.0 261,176 + +1.2 261,177 - +1.1 261,186 + -0.3 261,186 + -1.2 261,187 - -0.2 261,188 + -0.4 261,188 + +0.0 261,188 + -0.8 261,189 - +0.5 261,189 - -0.6 261,190 + -0.2 261,191 - -1.4 261,197 - -0.5 261,210 + -0.8 261,210 + -0.3 261,217 + +0.9 261,219 + +1.3 261,254 - BACOVA_04367 0.22 -1.1 261,391 + BACOVA_04367 0.78 -0.5 261,392 - BACOVA_04367 0.78 -1.2 261,392 - BACOVA_04367 0.78 -1.4 261,473 + -1.5 261,570 + -1.1 261,570 - -1.0 261,571 - -0.9 261,575 + +1.8 261,595 + -1.8 261,596 - +0.5 261,597 + -0.0 261,622 - -1.9 261,624 - +1.3 261,647 - -2.5 261,647 - -2.1 261,697 + -3.0 261,698 - +0.7 261,809 + +0.3 261,809 + +0.3
Or see this region's nucleotide sequence