Experiment: b-glucan from Barley 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04218 and BACOVA_04219 are separated by 366 nucleotides BACOVA_04219 and BACOVA_04220 are separated by 80 nucleotides
BACOVA_04218: BACOVA_04218 - hypothetical protein, at 96,866 to 97,087
_04218
BACOVA_04219: BACOVA_04219 - TonB-dependent receptor, at 97,454 to 99,496
_04219
BACOVA_04220: BACOVA_04220 - hypothetical protein, at 99,577 to 101,493
_04220
Position (kb) 97
98
99
100 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 96.462 kb on + strand at 96.471 kb on + strand at 96.487 kb on - strand at 96.491 kb on + strand at 96.496 kb on - strand at 96.510 kb on + strand at 96.514 kb on + strand at 96.514 kb on + strand at 96.514 kb on + strand at 96.514 kb on + strand at 96.515 kb on - strand at 96.517 kb on - strand at 96.517 kb on - strand at 96.532 kb on + strand at 96.554 kb on + strand at 96.556 kb on + strand at 96.556 kb on + strand at 96.556 kb on + strand at 96.556 kb on + strand at 96.557 kb on - strand at 96.557 kb on - strand at 96.578 kb on + strand at 96.578 kb on + strand at 96.578 kb on + strand at 96.579 kb on - strand at 96.579 kb on - strand at 96.593 kb on + strand at 96.601 kb on - strand at 96.618 kb on + strand at 96.618 kb on + strand at 96.619 kb on - strand at 96.619 kb on - strand at 96.619 kb on - strand at 96.626 kb on + strand at 96.627 kb on - strand at 96.632 kb on + strand at 96.658 kb on - strand at 96.683 kb on + strand at 96.747 kb on - strand at 96.764 kb on - strand at 96.773 kb on + strand at 96.805 kb on - strand at 96.805 kb on - strand at 96.814 kb on + strand at 96.822 kb on - strand at 96.828 kb on + strand at 96.829 kb on - strand at 96.835 kb on - strand at 96.835 kb on - strand at 96.858 kb on - strand at 96.868 kb on - strand at 96.868 kb on - strand at 96.897 kb on + strand, within BACOVA_04218 at 96.947 kb on + strand, within BACOVA_04218 at 96.948 kb on - strand, within BACOVA_04218 at 97.064 kb on - strand, within BACOVA_04218 at 97.120 kb on - strand at 97.177 kb on + strand at 97.178 kb on - strand at 97.178 kb on - strand at 97.236 kb on + strand at 97.261 kb on + strand at 97.262 kb on - strand at 97.298 kb on - strand at 97.318 kb on + strand at 97.338 kb on + strand at 97.339 kb on - strand at 97.382 kb on + strand at 97.382 kb on + strand at 97.386 kb on + strand at 97.429 kb on + strand at 97.430 kb on - strand at 97.451 kb on + strand at 97.452 kb on - strand at 97.471 kb on + strand at 97.543 kb on - strand at 97.543 kb on - strand at 97.547 kb on - strand at 97.555 kb on + strand at 97.555 kb on + strand at 97.556 kb on - strand at 97.560 kb on - strand at 97.560 kb on - strand at 97.575 kb on + strand at 97.575 kb on + strand at 97.592 kb on + strand at 97.608 kb on + strand at 97.609 kb on - strand at 97.632 kb on + strand at 97.633 kb on - strand at 97.726 kb on + strand, within BACOVA_04219 at 97.727 kb on - strand, within BACOVA_04219 at 97.738 kb on - strand, within BACOVA_04219 at 97.753 kb on - strand, within BACOVA_04219 at 97.753 kb on - strand, within BACOVA_04219 at 97.774 kb on + strand, within BACOVA_04219 at 97.951 kb on + strand, within BACOVA_04219 at 97.986 kb on + strand, within BACOVA_04219 at 97.986 kb on + strand, within BACOVA_04219 at 97.986 kb on + strand, within BACOVA_04219 at 98.114 kb on + strand, within BACOVA_04219 at 98.115 kb on - strand, within BACOVA_04219 at 98.116 kb on + strand, within BACOVA_04219 at 98.116 kb on + strand, within BACOVA_04219 at 98.181 kb on + strand, within BACOVA_04219 at 98.182 kb on - strand, within BACOVA_04219 at 98.256 kb on - strand, within BACOVA_04219 at 98.288 kb on - strand, within BACOVA_04219 at 98.344 kb on - strand, within BACOVA_04219 at 98.355 kb on - strand, within BACOVA_04219 at 98.355 kb on - strand, within BACOVA_04219 at 98.383 kb on - strand, within BACOVA_04219 at 98.427 kb on + strand, within BACOVA_04219 at 98.475 kb on - strand, within BACOVA_04219 at 98.487 kb on - strand, within BACOVA_04219 at 98.505 kb on + strand, within BACOVA_04219 at 98.506 kb on - strand, within BACOVA_04219 at 98.508 kb on + strand, within BACOVA_04219 at 98.508 kb on + strand, within BACOVA_04219 at 98.580 kb on + strand, within BACOVA_04219 at 98.580 kb on + strand, within BACOVA_04219 at 98.592 kb on + strand, within BACOVA_04219 at 98.593 kb on - strand, within BACOVA_04219 at 98.673 kb on + strand, within BACOVA_04219 at 98.745 kb on + strand, within BACOVA_04219 at 98.787 kb on + strand, within BACOVA_04219 at 98.787 kb on + strand, within BACOVA_04219 at 98.788 kb on - strand, within BACOVA_04219 at 98.798 kb on + strand, within BACOVA_04219 at 98.798 kb on + strand, within BACOVA_04219 at 98.799 kb on - strand, within BACOVA_04219 at 98.800 kb on + strand, within BACOVA_04219 at 98.835 kb on + strand, within BACOVA_04219 at 98.838 kb on - strand, within BACOVA_04219 at 98.838 kb on - strand, within BACOVA_04219 at 98.906 kb on + strand, within BACOVA_04219 at 98.906 kb on + strand, within BACOVA_04219 at 98.906 kb on + strand, within BACOVA_04219 at 98.906 kb on + strand, within BACOVA_04219 at 98.907 kb on - strand, within BACOVA_04219 at 98.937 kb on - strand, within BACOVA_04219 at 98.937 kb on - strand, within BACOVA_04219 at 98.963 kb on + strand, within BACOVA_04219 at 98.965 kb on + strand, within BACOVA_04219 at 98.966 kb on - strand, within BACOVA_04219 at 98.974 kb on - strand, within BACOVA_04219 at 98.981 kb on - strand, within BACOVA_04219 at 99.055 kb on + strand, within BACOVA_04219 at 99.123 kb on - strand, within BACOVA_04219 at 99.124 kb on + strand, within BACOVA_04219 at 99.125 kb on - strand, within BACOVA_04219 at 99.128 kb on + strand, within BACOVA_04219 at 99.128 kb on + strand, within BACOVA_04219 at 99.142 kb on - strand, within BACOVA_04219 at 99.142 kb on - strand, within BACOVA_04219 at 99.170 kb on + strand, within BACOVA_04219 at 99.170 kb on + strand, within BACOVA_04219 at 99.195 kb on + strand, within BACOVA_04219 at 99.263 kb on + strand, within BACOVA_04219 at 99.274 kb on - strand, within BACOVA_04219 at 99.274 kb on - strand, within BACOVA_04219 at 99.328 kb on + strand at 99.329 kb on - strand at 99.332 kb on + strand at 99.332 kb on + strand at 99.333 kb on - strand at 99.334 kb on + strand at 99.346 kb on + strand at 99.372 kb on + strand at 99.487 kb on - strand at 99.494 kb on + strand at 99.495 kb on - strand at 99.495 kb on - strand at 99.498 kb on + strand at 99.514 kb on - strand at 99.541 kb on - strand at 99.542 kb on + strand at 99.543 kb on - strand at 99.572 kb on + strand at 99.623 kb on + strand at 99.624 kb on - strand at 99.656 kb on + strand at 99.657 kb on - strand at 99.657 kb on - strand at 99.659 kb on - strand at 99.659 kb on - strand at 99.663 kb on - strand at 99.663 kb on - strand at 99.665 kb on + strand at 99.777 kb on + strand, within BACOVA_04220 at 99.789 kb on + strand, within BACOVA_04220 at 99.800 kb on - strand, within BACOVA_04220 at 99.814 kb on + strand, within BACOVA_04220 at 99.815 kb on - strand, within BACOVA_04220 at 99.821 kb on + strand, within BACOVA_04220 at 99.842 kb on + strand, within BACOVA_04220 at 99.925 kb on + strand, within BACOVA_04220 at 99.925 kb on + strand, within BACOVA_04220 at 99.926 kb on - strand, within BACOVA_04220 at 99.927 kb on + strand, within BACOVA_04220 at 99.927 kb on + strand, within BACOVA_04220 at 99.953 kb on - strand, within BACOVA_04220 at 99.953 kb on - strand, within BACOVA_04220 at 99.956 kb on + strand, within BACOVA_04220 at 99.957 kb on - strand, within BACOVA_04220 at 99.957 kb on - strand, within BACOVA_04220 at 99.957 kb on - strand, within BACOVA_04220 at 99.957 kb on - strand, within BACOVA_04220 at 99.957 kb on - strand, within BACOVA_04220 at 100.007 kb on + strand, within BACOVA_04220 at 100.008 kb on - strand, within BACOVA_04220 at 100.014 kb on + strand, within BACOVA_04220 at 100.015 kb on - strand, within BACOVA_04220 at 100.015 kb on - strand, within BACOVA_04220 at 100.015 kb on - strand, within BACOVA_04220 at 100.032 kb on + strand, within BACOVA_04220 at 100.053 kb on - strand, within BACOVA_04220 at 100.067 kb on + strand, within BACOVA_04220 at 100.069 kb on + strand, within BACOVA_04220 at 100.069 kb on + strand, within BACOVA_04220 at 100.071 kb on + strand, within BACOVA_04220 at 100.071 kb on + strand, within BACOVA_04220 at 100.072 kb on - strand, within BACOVA_04220 at 100.072 kb on - strand, within BACOVA_04220 at 100.116 kb on - strand, within BACOVA_04220 at 100.116 kb on - strand, within BACOVA_04220 at 100.119 kb on + strand, within BACOVA_04220 at 100.120 kb on - strand, within BACOVA_04220 at 100.122 kb on + strand, within BACOVA_04220 at 100.122 kb on + strand, within BACOVA_04220 at 100.122 kb on + strand, within BACOVA_04220 at 100.122 kb on + strand, within BACOVA_04220 at 100.127 kb on + strand, within BACOVA_04220 at 100.170 kb on + strand, within BACOVA_04220 at 100.226 kb on + strand, within BACOVA_04220 at 100.226 kb on + strand, within BACOVA_04220 at 100.245 kb on + strand, within BACOVA_04220 at 100.247 kb on + strand, within BACOVA_04220 at 100.248 kb on - strand, within BACOVA_04220 at 100.261 kb on + strand, within BACOVA_04220 at 100.261 kb on + strand, within BACOVA_04220 at 100.262 kb on - strand, within BACOVA_04220 at 100.264 kb on - strand, within BACOVA_04220 at 100.278 kb on - strand, within BACOVA_04220 at 100.346 kb on + strand, within BACOVA_04220 at 100.346 kb on + strand, within BACOVA_04220 at 100.346 kb on + strand, within BACOVA_04220 at 100.352 kb on - strand, within BACOVA_04220 at 100.355 kb on + strand, within BACOVA_04220 at 100.355 kb on + strand, within BACOVA_04220 at 100.356 kb on - strand, within BACOVA_04220 at 100.359 kb on + strand, within BACOVA_04220 at 100.359 kb on + strand, within BACOVA_04220 at 100.360 kb on - strand, within BACOVA_04220 at 100.360 kb on - strand, within BACOVA_04220 at 100.364 kb on - strand, within BACOVA_04220 at 100.369 kb on + strand, within BACOVA_04220 at 100.370 kb on - strand, within BACOVA_04220 at 100.458 kb on - strand, within BACOVA_04220 at 100.458 kb on - strand, within BACOVA_04220 at 100.468 kb on + strand, within BACOVA_04220 at 100.479 kb on + strand, within BACOVA_04220 at 100.479 kb on + strand, within BACOVA_04220 at 100.490 kb on - strand, within BACOVA_04220
Per-strain Table
Position Strand Gene LocusTag Fraction b-glucan from Barley 2.5 mg/ml (C) remove 96,462 + +0.5 96,471 + -0.3 96,487 - -0.7 96,491 + +0.3 96,496 - +1.1 96,510 + -0.2 96,514 + +0.6 96,514 + +0.7 96,514 + -0.2 96,514 + +0.8 96,515 - -0.2 96,517 - -0.8 96,517 - +0.3 96,532 + +1.3 96,554 + -0.7 96,556 + +0.2 96,556 + +0.9 96,556 + -0.9 96,556 + -1.7 96,557 - -1.2 96,557 - -0.0 96,578 + +0.8 96,578 + +1.3 96,578 + +0.3 96,579 - +0.1 96,579 - +1.7 96,593 + +1.3 96,601 - -1.0 96,618 + -0.4 96,618 + -0.2 96,619 - -0.7 96,619 - -0.6 96,619 - +1.3 96,626 + +0.5 96,627 - -2.1 96,632 + -0.2 96,658 - -0.7 96,683 + +1.3 96,747 - +0.8 96,764 - -0.2 96,773 + -0.7 96,805 - +0.9 96,805 - +0.3 96,814 + -1.7 96,822 - +1.7 96,828 + -0.3 96,829 - +0.0 96,835 - +0.3 96,835 - +1.0 96,858 - -0.2 96,868 - -0.4 96,868 - -0.2 96,897 + BACOVA_04218 0.14 +0.5 96,947 + BACOVA_04218 0.36 -1.0 96,948 - BACOVA_04218 0.37 -0.5 97,064 - BACOVA_04218 0.89 -0.5 97,120 - +0.5 97,177 + +1.8 97,178 - +1.7 97,178 - +1.3 97,236 + +1.0 97,261 + +0.5 97,262 - +0.3 97,298 - -0.2 97,318 + -0.1 97,338 + +1.3 97,339 - -0.5 97,382 + -0.2 97,382 + +0.3 97,386 + -2.2 97,429 + +1.1 97,430 - -0.5 97,451 + +1.3 97,452 - +0.5 97,471 + -2.6 97,543 - +1.3 97,543 - +0.9 97,547 - +1.0 97,555 + +0.3 97,555 + +1.7 97,556 - +0.9 97,560 - -0.2 97,560 - +0.1 97,575 + +0.0 97,575 + -1.2 97,592 + +0.1 97,608 + +0.7 97,609 - -0.2 97,632 + +0.1 97,633 - +1.1 97,726 + BACOVA_04219 0.13 -0.3 97,727 - BACOVA_04219 0.13 +0.9 97,738 - BACOVA_04219 0.14 +0.3 97,753 - BACOVA_04219 0.15 +1.3 97,753 - BACOVA_04219 0.15 -0.5 97,774 + BACOVA_04219 0.16 +0.5 97,951 + BACOVA_04219 0.24 +1.7 97,986 + BACOVA_04219 0.26 +0.8 97,986 + BACOVA_04219 0.26 +1.6 97,986 + BACOVA_04219 0.26 -2.8 98,114 + BACOVA_04219 0.32 +0.0 98,115 - BACOVA_04219 0.32 +0.2 98,116 + BACOVA_04219 0.32 +1.2 98,116 + BACOVA_04219 0.32 -1.2 98,181 + BACOVA_04219 0.36 +0.3 98,182 - BACOVA_04219 0.36 -0.8 98,256 - BACOVA_04219 0.39 +1.2 98,288 - BACOVA_04219 0.41 -2.7 98,344 - BACOVA_04219 0.44 +0.1 98,355 - BACOVA_04219 0.44 -1.6 98,355 - BACOVA_04219 0.44 +0.6 98,383 - BACOVA_04219 0.45 -1.0 98,427 + BACOVA_04219 0.48 +0.6 98,475 - BACOVA_04219 0.50 -1.0 98,487 - BACOVA_04219 0.51 -0.7 98,505 + BACOVA_04219 0.51 +0.3 98,506 - BACOVA_04219 0.51 -0.2 98,508 + BACOVA_04219 0.52 -0.7 98,508 + BACOVA_04219 0.52 -1.1 98,580 + BACOVA_04219 0.55 +1.8 98,580 + BACOVA_04219 0.55 +0.3 98,592 + BACOVA_04219 0.56 -0.2 98,593 - BACOVA_04219 0.56 +0.0 98,673 + BACOVA_04219 0.60 +1.8 98,745 + BACOVA_04219 0.63 -0.4 98,787 + BACOVA_04219 0.65 -0.7 98,787 + BACOVA_04219 0.65 +1.3 98,788 - BACOVA_04219 0.65 +3.4 98,798 + BACOVA_04219 0.66 +1.7 98,798 + BACOVA_04219 0.66 +1.6 98,799 - BACOVA_04219 0.66 +0.5 98,800 + BACOVA_04219 0.66 -1.8 98,835 + BACOVA_04219 0.68 -0.4 98,838 - BACOVA_04219 0.68 +2.6 98,838 - BACOVA_04219 0.68 +3.3 98,906 + BACOVA_04219 0.71 +0.3 98,906 + BACOVA_04219 0.71 -1.0 98,906 + BACOVA_04219 0.71 -0.7 98,906 + BACOVA_04219 0.71 -0.5 98,907 - BACOVA_04219 0.71 +0.1 98,937 - BACOVA_04219 0.73 -1.5 98,937 - BACOVA_04219 0.73 -0.7 98,963 + BACOVA_04219 0.74 -0.8 98,965 + BACOVA_04219 0.74 +0.3 98,966 - BACOVA_04219 0.74 +0.6 98,974 - BACOVA_04219 0.74 +0.4 98,981 - BACOVA_04219 0.75 -0.1 99,055 + BACOVA_04219 0.78 -0.5 99,123 - BACOVA_04219 0.82 -2.0 99,124 + BACOVA_04219 0.82 +1.2 99,125 - BACOVA_04219 0.82 +0.3 99,128 + BACOVA_04219 0.82 +0.6 99,128 + BACOVA_04219 0.82 +1.1 99,142 - BACOVA_04219 0.83 +1.0 99,142 - BACOVA_04219 0.83 -0.0 99,170 + BACOVA_04219 0.84 -0.6 99,170 + BACOVA_04219 0.84 +0.3 99,195 + BACOVA_04219 0.85 +0.3 99,263 + BACOVA_04219 0.89 -1.0 99,274 - BACOVA_04219 0.89 +0.5 99,274 - BACOVA_04219 0.89 -0.5 99,328 + -1.6 99,329 - +1.8 99,332 + +1.3 99,332 + +0.3 99,333 - -1.1 99,334 + +1.0 99,346 + -1.2 99,372 + +0.8 99,487 - +0.3 99,494 + +0.3 99,495 - -0.6 99,495 - +0.3 99,498 + +1.6 99,514 - +1.3 99,541 - -1.2 99,542 + -0.3 99,543 - -1.2 99,572 + +0.3 99,623 + +0.9 99,624 - +0.3 99,656 + -0.4 99,657 - -1.0 99,657 - +1.2 99,659 - +0.5 99,659 - -0.2 99,663 - +0.3 99,663 - +0.1 99,665 + +0.3 99,777 + BACOVA_04220 0.10 -0.2 99,789 + BACOVA_04220 0.11 +2.3 99,800 - BACOVA_04220 0.12 +0.3 99,814 + BACOVA_04220 0.12 -1.4 99,815 - BACOVA_04220 0.12 -2.5 99,821 + BACOVA_04220 0.13 -0.1 99,842 + BACOVA_04220 0.14 -0.7 99,925 + BACOVA_04220 0.18 +1.3 99,925 + BACOVA_04220 0.18 -1.7 99,926 - BACOVA_04220 0.18 +1.3 99,927 + BACOVA_04220 0.18 -1.0 99,927 + BACOVA_04220 0.18 -0.1 99,953 - BACOVA_04220 0.20 +0.8 99,953 - BACOVA_04220 0.20 -0.2 99,956 + BACOVA_04220 0.20 +0.0 99,957 - BACOVA_04220 0.20 -0.2 99,957 - BACOVA_04220 0.20 -0.6 99,957 - BACOVA_04220 0.20 +0.2 99,957 - BACOVA_04220 0.20 -1.2 99,957 - BACOVA_04220 0.20 +0.6 100,007 + BACOVA_04220 0.22 +0.7 100,008 - BACOVA_04220 0.22 +0.3 100,014 + BACOVA_04220 0.23 +0.8 100,015 - BACOVA_04220 0.23 +0.6 100,015 - BACOVA_04220 0.23 -0.2 100,015 - BACOVA_04220 0.23 -0.4 100,032 + BACOVA_04220 0.24 -0.8 100,053 - BACOVA_04220 0.25 -1.2 100,067 + BACOVA_04220 0.26 -0.7 100,069 + BACOVA_04220 0.26 +0.3 100,069 + BACOVA_04220 0.26 -0.1 100,071 + BACOVA_04220 0.26 +0.3 100,071 + BACOVA_04220 0.26 +0.3 100,072 - BACOVA_04220 0.26 +0.0 100,072 - BACOVA_04220 0.26 +1.8 100,116 - BACOVA_04220 0.28 -0.5 100,116 - BACOVA_04220 0.28 +0.4 100,119 + BACOVA_04220 0.28 -0.2 100,120 - BACOVA_04220 0.28 +1.7 100,122 + BACOVA_04220 0.28 -0.7 100,122 + BACOVA_04220 0.28 +1.3 100,122 + BACOVA_04220 0.28 +0.1 100,122 + BACOVA_04220 0.28 +1.3 100,127 + BACOVA_04220 0.29 +1.5 100,170 + BACOVA_04220 0.31 -0.8 100,226 + BACOVA_04220 0.34 -0.4 100,226 + BACOVA_04220 0.34 -0.7 100,245 + BACOVA_04220 0.35 -0.8 100,247 + BACOVA_04220 0.35 -0.7 100,248 - BACOVA_04220 0.35 +0.9 100,261 + BACOVA_04220 0.36 +0.5 100,261 + BACOVA_04220 0.36 +0.6 100,262 - BACOVA_04220 0.36 +2.2 100,264 - BACOVA_04220 0.36 +1.1 100,278 - BACOVA_04220 0.37 +2.5 100,346 + BACOVA_04220 0.40 -2.2 100,346 + BACOVA_04220 0.40 -1.5 100,346 + BACOVA_04220 0.40 +1.9 100,352 - BACOVA_04220 0.40 +0.3 100,355 + BACOVA_04220 0.41 +0.3 100,355 + BACOVA_04220 0.41 -0.7 100,356 - BACOVA_04220 0.41 -0.5 100,359 + BACOVA_04220 0.41 -1.8 100,359 + BACOVA_04220 0.41 +0.0 100,360 - BACOVA_04220 0.41 +0.0 100,360 - BACOVA_04220 0.41 +0.1 100,364 - BACOVA_04220 0.41 -0.1 100,369 + BACOVA_04220 0.41 +0.2 100,370 - BACOVA_04220 0.41 -0.7 100,458 - BACOVA_04220 0.46 +1.8 100,458 - BACOVA_04220 0.46 -1.5 100,468 + BACOVA_04220 0.46 +1.6 100,479 + BACOVA_04220 0.47 +0.3 100,479 + BACOVA_04220 0.47 +0.6 100,490 - BACOVA_04220 0.48 +2.1
Or see this region's nucleotide sequence