Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03344

Experiment: b-glucan from Barley 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03343 and BACOVA_03344 are separated by 232 nucleotidesBACOVA_03344 and BACOVA_03345 are separated by 55 nucleotides BACOVA_03343: BACOVA_03343 - hypothetical protein, at 36,907 to 38,403 _03343 BACOVA_03344: BACOVA_03344 - glycosyl hydrolase family 76, at 38,636 to 39,895 _03344 BACOVA_03345: BACOVA_03345 - hypothetical protein, at 39,951 to 42,428 _03345 Position (kb) 38 39 40Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 37.647 kb on + strand, within BACOVA_03343at 37.783 kb on + strand, within BACOVA_03343at 37.783 kb on + strand, within BACOVA_03343at 37.813 kb on - strand, within BACOVA_03343at 37.813 kb on - strand, within BACOVA_03343at 37.857 kb on + strand, within BACOVA_03343at 37.934 kb on - strand, within BACOVA_03343at 37.996 kb on + strand, within BACOVA_03343at 37.997 kb on - strand, within BACOVA_03343at 38.059 kb on + strand, within BACOVA_03343at 38.060 kb on - strand, within BACOVA_03343at 38.060 kb on - strand, within BACOVA_03343at 38.060 kb on - strand, within BACOVA_03343at 38.060 kb on - strand, within BACOVA_03343at 38.060 kb on - strand, within BACOVA_03343at 38.060 kb on - strand, within BACOVA_03343at 38.061 kb on + strand, within BACOVA_03343at 38.076 kb on + strand, within BACOVA_03343at 38.076 kb on + strand, within BACOVA_03343at 38.076 kb on + strand, within BACOVA_03343at 38.076 kb on + strand, within BACOVA_03343at 38.077 kb on - strand, within BACOVA_03343at 38.082 kb on + strand, within BACOVA_03343at 38.082 kb on + strand, within BACOVA_03343at 38.085 kb on + strand, within BACOVA_03343at 38.133 kb on + strand, within BACOVA_03343at 38.157 kb on - strand, within BACOVA_03343at 38.202 kb on - strand, within BACOVA_03343at 38.203 kb on + strand, within BACOVA_03343at 38.203 kb on + strand, within BACOVA_03343at 38.204 kb on - strand, within BACOVA_03343at 38.212 kb on + strand, within BACOVA_03343at 38.214 kb on + strand, within BACOVA_03343at 38.215 kb on - strand, within BACOVA_03343at 38.215 kb on - strand, within BACOVA_03343at 38.215 kb on - strand, within BACOVA_03343at 38.234 kb on + strand, within BACOVA_03343at 38.234 kb on + strand, within BACOVA_03343at 38.244 kb on + strand, within BACOVA_03343at 38.318 kb on + strandat 38.349 kb on - strandat 38.438 kb on - strandat 38.451 kb on - strandat 38.462 kb on - strandat 38.483 kb on + strandat 38.501 kb on + strandat 38.501 kb on + strandat 38.504 kb on + strandat 38.513 kb on - strandat 38.555 kb on - strandat 38.565 kb on + strandat 38.566 kb on - strandat 38.618 kb on - strandat 38.619 kb on + strandat 38.619 kb on + strandat 38.626 kb on - strandat 38.627 kb on + strandat 38.632 kb on + strandat 38.667 kb on + strandat 38.667 kb on + strandat 38.670 kb on + strandat 38.686 kb on + strandat 38.687 kb on - strandat 38.689 kb on + strandat 38.690 kb on - strandat 38.690 kb on - strandat 38.740 kb on + strandat 38.777 kb on - strand, within BACOVA_03344at 38.777 kb on - strand, within BACOVA_03344at 38.782 kb on + strand, within BACOVA_03344at 38.783 kb on - strand, within BACOVA_03344at 38.787 kb on + strand, within BACOVA_03344at 38.801 kb on - strand, within BACOVA_03344at 38.805 kb on - strand, within BACOVA_03344at 38.882 kb on - strand, within BACOVA_03344at 38.912 kb on - strand, within BACOVA_03344at 38.951 kb on + strand, within BACOVA_03344at 38.952 kb on - strand, within BACOVA_03344at 38.952 kb on - strand, within BACOVA_03344at 38.956 kb on + strand, within BACOVA_03344at 38.999 kb on + strand, within BACOVA_03344at 39.000 kb on - strand, within BACOVA_03344at 39.023 kb on - strand, within BACOVA_03344at 39.073 kb on + strand, within BACOVA_03344at 39.137 kb on - strand, within BACOVA_03344at 39.208 kb on + strand, within BACOVA_03344at 39.209 kb on - strand, within BACOVA_03344at 39.277 kb on + strand, within BACOVA_03344at 39.277 kb on + strand, within BACOVA_03344at 39.278 kb on - strand, within BACOVA_03344at 39.278 kb on - strand, within BACOVA_03344at 39.278 kb on - strand, within BACOVA_03344at 39.383 kb on + strand, within BACOVA_03344at 39.397 kb on + strand, within BACOVA_03344at 39.398 kb on - strand, within BACOVA_03344at 39.408 kb on - strand, within BACOVA_03344at 39.501 kb on + strand, within BACOVA_03344at 39.501 kb on + strand, within BACOVA_03344at 39.501 kb on + strand, within BACOVA_03344at 39.502 kb on - strand, within BACOVA_03344at 39.502 kb on - strand, within BACOVA_03344at 39.502 kb on - strand, within BACOVA_03344at 39.502 kb on - strand, within BACOVA_03344at 39.502 kb on - strand, within BACOVA_03344at 39.503 kb on + strand, within BACOVA_03344at 39.503 kb on + strand, within BACOVA_03344at 39.503 kb on + strand, within BACOVA_03344at 39.504 kb on - strand, within BACOVA_03344at 39.566 kb on + strand, within BACOVA_03344at 39.580 kb on + strand, within BACOVA_03344at 39.580 kb on + strand, within BACOVA_03344at 39.581 kb on - strand, within BACOVA_03344at 39.598 kb on + strand, within BACOVA_03344at 39.599 kb on - strand, within BACOVA_03344at 39.626 kb on - strand, within BACOVA_03344at 39.626 kb on - strand, within BACOVA_03344at 39.650 kb on - strand, within BACOVA_03344at 39.661 kb on + strand, within BACOVA_03344at 39.665 kb on + strand, within BACOVA_03344at 39.666 kb on - strand, within BACOVA_03344at 39.687 kb on - strand, within BACOVA_03344at 39.687 kb on - strand, within BACOVA_03344at 39.687 kb on - strand, within BACOVA_03344at 39.688 kb on + strand, within BACOVA_03344at 39.688 kb on + strand, within BACOVA_03344at 39.688 kb on + strand, within BACOVA_03344at 39.704 kb on + strand, within BACOVA_03344at 39.705 kb on - strand, within BACOVA_03344at 39.745 kb on + strand, within BACOVA_03344at 39.790 kb on - strandat 39.790 kb on - strandat 39.804 kb on - strandat 39.806 kb on + strandat 39.807 kb on - strandat 39.842 kb on + strandat 39.856 kb on + strandat 39.857 kb on - strandat 39.898 kb on - strandat 39.933 kb on - strandat 39.977 kb on - strandat 40.002 kb on - strandat 40.018 kb on + strandat 40.080 kb on + strandat 40.080 kb on + strandat 40.080 kb on + strandat 40.082 kb on + strandat 40.083 kb on - strandat 40.083 kb on - strandat 40.085 kb on + strandat 40.112 kb on - strandat 40.219 kb on + strand, within BACOVA_03345at 40.219 kb on + strand, within BACOVA_03345at 40.219 kb on + strand, within BACOVA_03345at 40.220 kb on - strand, within BACOVA_03345at 40.220 kb on - strand, within BACOVA_03345at 40.231 kb on + strand, within BACOVA_03345at 40.266 kb on + strand, within BACOVA_03345at 40.266 kb on + strand, within BACOVA_03345at 40.267 kb on - strand, within BACOVA_03345at 40.267 kb on - strand, within BACOVA_03345at 40.267 kb on - strand, within BACOVA_03345at 40.267 kb on - strand, within BACOVA_03345at 40.405 kb on + strand, within BACOVA_03345at 40.451 kb on - strand, within BACOVA_03345at 40.451 kb on - strand, within BACOVA_03345at 40.452 kb on + strand, within BACOVA_03345at 40.452 kb on + strand, within BACOVA_03345at 40.453 kb on - strand, within BACOVA_03345at 40.453 kb on - strand, within BACOVA_03345at 40.481 kb on + strand, within BACOVA_03345at 40.482 kb on - strand, within BACOVA_03345at 40.485 kb on - strand, within BACOVA_03345at 40.491 kb on - strand, within BACOVA_03345at 40.491 kb on - strand, within BACOVA_03345at 40.508 kb on - strand, within BACOVA_03345at 40.529 kb on + strand, within BACOVA_03345at 40.530 kb on - strand, within BACOVA_03345at 40.564 kb on + strand, within BACOVA_03345at 40.564 kb on + strand, within BACOVA_03345at 40.565 kb on - strand, within BACOVA_03345at 40.567 kb on + strand, within BACOVA_03345at 40.610 kb on + strand, within BACOVA_03345at 40.654 kb on + strand, within BACOVA_03345at 40.705 kb on + strand, within BACOVA_03345at 40.705 kb on + strand, within BACOVA_03345at 40.706 kb on - strand, within BACOVA_03345at 40.711 kb on + strand, within BACOVA_03345at 40.711 kb on + strand, within BACOVA_03345at 40.711 kb on + strand, within BACOVA_03345at 40.712 kb on + strand, within BACOVA_03345at 40.712 kb on - strand, within BACOVA_03345at 40.728 kb on + strand, within BACOVA_03345at 40.728 kb on + strand, within BACOVA_03345at 40.729 kb on - strand, within BACOVA_03345at 40.729 kb on - strand, within BACOVA_03345at 40.732 kb on - strand, within BACOVA_03345at 40.772 kb on + strand, within BACOVA_03345at 40.773 kb on - strand, within BACOVA_03345at 40.781 kb on + strand, within BACOVA_03345at 40.781 kb on + strand, within BACOVA_03345at 40.782 kb on - strand, within BACOVA_03345at 40.824 kb on + strand, within BACOVA_03345at 40.824 kb on + strand, within BACOVA_03345at 40.878 kb on + strand, within BACOVA_03345

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Per-strain Table

Position Strand Gene LocusTag Fraction b-glucan from Barley 2.5 mg/ml (C)
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37,647 + BACOVA_03343 0.49 -0.8
37,783 + BACOVA_03343 0.59 -0.8
37,783 + BACOVA_03343 0.59 -0.5
37,813 - BACOVA_03343 0.61 +0.9
37,813 - BACOVA_03343 0.61 -1.0
37,857 + BACOVA_03343 0.63 -0.1
37,934 - BACOVA_03343 0.69 +1.1
37,996 + BACOVA_03343 0.73 -2.0
37,997 - BACOVA_03343 0.73 +0.0
38,059 + BACOVA_03343 0.77 -0.7
38,060 - BACOVA_03343 0.77 -1.3
38,060 - BACOVA_03343 0.77 +0.5
38,060 - BACOVA_03343 0.77 +0.2
38,060 - BACOVA_03343 0.77 -0.5
38,060 - BACOVA_03343 0.77 +1.2
38,060 - BACOVA_03343 0.77 +0.5
38,061 + BACOVA_03343 0.77 -0.5
38,076 + BACOVA_03343 0.78 -1.2
38,076 + BACOVA_03343 0.78 -0.1
38,076 + BACOVA_03343 0.78 -1.1
38,076 + BACOVA_03343 0.78 -4.0
38,077 - BACOVA_03343 0.78 -0.5
38,082 + BACOVA_03343 0.78 -1.3
38,082 + BACOVA_03343 0.78 -0.4
38,085 + BACOVA_03343 0.79 -1.5
38,133 + BACOVA_03343 0.82 +0.5
38,157 - BACOVA_03343 0.84 +2.1
38,202 - BACOVA_03343 0.87 +1.5
38,203 + BACOVA_03343 0.87 -0.8
38,203 + BACOVA_03343 0.87 -0.8
38,204 - BACOVA_03343 0.87 -0.7
38,212 + BACOVA_03343 0.87 -0.8
38,214 + BACOVA_03343 0.87 -0.5
38,215 - BACOVA_03343 0.87 -0.9
38,215 - BACOVA_03343 0.87 -1.2
38,215 - BACOVA_03343 0.87 -0.6
38,234 + BACOVA_03343 0.89 -1.4
38,234 + BACOVA_03343 0.89 -3.2
38,244 + BACOVA_03343 0.89 -1.3
38,318 + -0.5
38,349 - +0.5
38,438 - -0.9
38,451 - -0.6
38,462 - +0.7
38,483 + -0.8
38,501 + -1.5
38,501 + -2.1
38,504 + -1.7
38,513 - +0.3
38,555 - +1.8
38,565 + -1.2
38,566 - +0.1
38,618 - +1.5
38,619 + +0.5
38,619 + +1.5
38,626 - +0.5
38,627 + -0.8
38,632 + -1.5
38,667 + -0.7
38,667 + -1.2
38,670 + -2.1
38,686 + -1.4
38,687 - +0.9
38,689 + -1.3
38,690 - -0.3
38,690 - -0.3
38,740 + -2.5
38,777 - BACOVA_03344 0.11 +1.0
38,777 - BACOVA_03344 0.11 +2.2
38,782 + BACOVA_03344 0.12 -1.3
38,783 - BACOVA_03344 0.12 -1.3
38,787 + BACOVA_03344 0.12 -0.3
38,801 - BACOVA_03344 0.13 +0.1
38,805 - BACOVA_03344 0.13 -0.6
38,882 - BACOVA_03344 0.20 +0.2
38,912 - BACOVA_03344 0.22 -0.8
38,951 + BACOVA_03344 0.25 -0.1
38,952 - BACOVA_03344 0.25 -0.4
38,952 - BACOVA_03344 0.25 +0.3
38,956 + BACOVA_03344 0.25 -0.7
38,999 + BACOVA_03344 0.29 -1.3
39,000 - BACOVA_03344 0.29 +1.5
39,023 - BACOVA_03344 0.31 +0.5
39,073 + BACOVA_03344 0.35 -1.5
39,137 - BACOVA_03344 0.40 -0.1
39,208 + BACOVA_03344 0.45 -0.4
39,209 - BACOVA_03344 0.45 -1.5
39,277 + BACOVA_03344 0.51 -3.6
39,277 + BACOVA_03344 0.51 -1.7
39,278 - BACOVA_03344 0.51 +0.5
39,278 - BACOVA_03344 0.51 +0.5
39,278 - BACOVA_03344 0.51 -0.6
39,383 + BACOVA_03344 0.59 -0.8
39,397 + BACOVA_03344 0.60 -2.7
39,398 - BACOVA_03344 0.60 -0.3
39,408 - BACOVA_03344 0.61 +0.5
39,501 + BACOVA_03344 0.69 -0.9
39,501 + BACOVA_03344 0.69 -1.4
39,501 + BACOVA_03344 0.69 -1.3
39,502 - BACOVA_03344 0.69 +1.1
39,502 - BACOVA_03344 0.69 +0.8
39,502 - BACOVA_03344 0.69 +0.5
39,502 - BACOVA_03344 0.69 +0.3
39,502 - BACOVA_03344 0.69 -0.6
39,503 + BACOVA_03344 0.69 -0.7
39,503 + BACOVA_03344 0.69 -1.5
39,503 + BACOVA_03344 0.69 -0.8
39,504 - BACOVA_03344 0.69 -0.2
39,566 + BACOVA_03344 0.74 -0.8
39,580 + BACOVA_03344 0.75 -1.5
39,580 + BACOVA_03344 0.75 -1.1
39,581 - BACOVA_03344 0.75 +0.2
39,598 + BACOVA_03344 0.76 -0.7
39,599 - BACOVA_03344 0.76 +2.3
39,626 - BACOVA_03344 0.79 -0.1
39,626 - BACOVA_03344 0.79 +1.8
39,650 - BACOVA_03344 0.80 -1.0
39,661 + BACOVA_03344 0.81 -2.1
39,665 + BACOVA_03344 0.82 -1.7
39,666 - BACOVA_03344 0.82 +1.2
39,687 - BACOVA_03344 0.83 +0.5
39,687 - BACOVA_03344 0.83 +0.5
39,687 - BACOVA_03344 0.83 -0.3
39,688 + BACOVA_03344 0.83 +0.9
39,688 + BACOVA_03344 0.83 -2.0
39,688 + BACOVA_03344 0.83 +1.5
39,704 + BACOVA_03344 0.85 -1.1
39,705 - BACOVA_03344 0.85 +0.1
39,745 + BACOVA_03344 0.88 -0.7
39,790 - -0.0
39,790 - +0.9
39,804 - +0.4
39,806 + -0.8
39,807 - -0.1
39,842 + +0.2
39,856 + -1.5
39,857 - +0.1
39,898 - +1.4
39,933 - +0.2
39,977 - -0.0
40,002 - +1.5
40,018 + +0.5
40,080 + +0.1
40,080 + -0.7
40,080 + -0.8
40,082 + +1.5
40,083 - +2.2
40,083 - -0.7
40,085 + -0.3
40,112 - +0.4
40,219 + BACOVA_03345 0.11 +0.3
40,219 + BACOVA_03345 0.11 -0.2
40,219 + BACOVA_03345 0.11 -1.3
40,220 - BACOVA_03345 0.11 +0.6
40,220 - BACOVA_03345 0.11 -0.4
40,231 + BACOVA_03345 0.11 -1.2
40,266 + BACOVA_03345 0.13 -0.1
40,266 + BACOVA_03345 0.13 +1.3
40,267 - BACOVA_03345 0.13 +1.4
40,267 - BACOVA_03345 0.13 +0.9
40,267 - BACOVA_03345 0.13 -0.9
40,267 - BACOVA_03345 0.13 +0.1
40,405 + BACOVA_03345 0.18 -1.3
40,451 - BACOVA_03345 0.20 +0.5
40,451 - BACOVA_03345 0.20 +0.0
40,452 + BACOVA_03345 0.20 -0.1
40,452 + BACOVA_03345 0.20 -3.6
40,453 - BACOVA_03345 0.20 +0.1
40,453 - BACOVA_03345 0.20 +0.1
40,481 + BACOVA_03345 0.21 +0.2
40,482 - BACOVA_03345 0.21 -0.8
40,485 - BACOVA_03345 0.22 +0.0
40,491 - BACOVA_03345 0.22 +0.7
40,491 - BACOVA_03345 0.22 -0.1
40,508 - BACOVA_03345 0.22 +0.1
40,529 + BACOVA_03345 0.23 -1.0
40,530 - BACOVA_03345 0.23 -0.5
40,564 + BACOVA_03345 0.25 +0.2
40,564 + BACOVA_03345 0.25 +0.2
40,565 - BACOVA_03345 0.25 -0.1
40,567 + BACOVA_03345 0.25 -1.4
40,610 + BACOVA_03345 0.27 -1.3
40,654 + BACOVA_03345 0.28 +0.5
40,705 + BACOVA_03345 0.30 -0.7
40,705 + BACOVA_03345 0.30 +0.8
40,706 - BACOVA_03345 0.30 -1.1
40,711 + BACOVA_03345 0.31 +0.6
40,711 + BACOVA_03345 0.31 -2.8
40,711 + BACOVA_03345 0.31 -0.3
40,712 + BACOVA_03345 0.31 -1.1
40,712 - BACOVA_03345 0.31 +0.5
40,728 + BACOVA_03345 0.31 -0.5
40,728 + BACOVA_03345 0.31 -1.4
40,729 - BACOVA_03345 0.31 -1.4
40,729 - BACOVA_03345 0.31 -1.3
40,732 - BACOVA_03345 0.32 -0.8
40,772 + BACOVA_03345 0.33 -2.3
40,773 - BACOVA_03345 0.33 -3.1
40,781 + BACOVA_03345 0.33 -0.1
40,781 + BACOVA_03345 0.33 +0.2
40,782 - BACOVA_03345 0.34 +0.2
40,824 + BACOVA_03345 0.35 -1.0
40,824 + BACOVA_03345 0.35 -1.6
40,878 + BACOVA_03345 0.37 +0.5

Or see this region's nucleotide sequence