Experiment: b-glucan from Barley 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02264 and BACOVA_02265 are separated by 111 nucleotides BACOVA_02265 and BACOVA_02266 are separated by 70 nucleotides BACOVA_02266 and BACOVA_02267 are separated by 3 nucleotides
BACOVA_02264: BACOVA_02264 - radical SAM domain protein, at 39,826 to 41,184
_02264
BACOVA_02265: BACOVA_02265 - hypothetical protein, at 41,296 to 41,709
_02265
BACOVA_02266: BACOVA_02266 - pseudouridine synthase, RluA family, at 41,780 to 42,733
_02266
BACOVA_02267: BACOVA_02267 - 23S rRNA (uracil-5-)-methyltransferase RumA, at 42,737 to 44,155
_02267
Position (kb) 41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 40.859 kb on - strand, within BACOVA_02264 at 40.872 kb on + strand, within BACOVA_02264 at 40.897 kb on + strand, within BACOVA_02264 at 40.921 kb on - strand, within BACOVA_02264 at 40.921 kb on - strand, within BACOVA_02264 at 40.921 kb on - strand, within BACOVA_02264 at 40.936 kb on + strand, within BACOVA_02264 at 40.937 kb on - strand, within BACOVA_02264 at 40.987 kb on + strand, within BACOVA_02264 at 40.998 kb on + strand, within BACOVA_02264 at 40.999 kb on - strand, within BACOVA_02264 at 41.065 kb on - strand at 41.080 kb on - strand at 41.101 kb on - strand at 41.119 kb on + strand at 41.119 kb on + strand at 41.120 kb on - strand at 41.120 kb on - strand at 41.157 kb on + strand at 41.161 kb on + strand at 41.195 kb on + strand at 41.240 kb on + strand at 41.240 kb on + strand at 41.243 kb on - strand at 41.245 kb on + strand at 41.246 kb on - strand at 41.252 kb on - strand at 41.270 kb on + strand at 41.295 kb on + strand at 41.307 kb on - strand at 41.315 kb on - strand at 41.315 kb on - strand at 41.342 kb on + strand, within BACOVA_02265 at 41.342 kb on + strand, within BACOVA_02265 at 41.355 kb on + strand, within BACOVA_02265 at 41.356 kb on - strand, within BACOVA_02265 at 41.388 kb on + strand, within BACOVA_02265 at 41.389 kb on - strand, within BACOVA_02265 at 41.408 kb on - strand, within BACOVA_02265 at 41.408 kb on - strand, within BACOVA_02265 at 41.410 kb on - strand, within BACOVA_02265 at 41.410 kb on - strand, within BACOVA_02265 at 41.410 kb on - strand, within BACOVA_02265 at 41.413 kb on - strand, within BACOVA_02265 at 41.437 kb on + strand, within BACOVA_02265 at 41.437 kb on + strand, within BACOVA_02265 at 41.438 kb on - strand, within BACOVA_02265 at 41.439 kb on + strand, within BACOVA_02265 at 41.439 kb on + strand, within BACOVA_02265 at 41.440 kb on - strand, within BACOVA_02265 at 41.454 kb on + strand, within BACOVA_02265 at 41.454 kb on + strand, within BACOVA_02265 at 41.455 kb on - strand, within BACOVA_02265 at 41.455 kb on - strand, within BACOVA_02265 at 41.455 kb on - strand, within BACOVA_02265 at 41.470 kb on - strand, within BACOVA_02265 at 41.551 kb on + strand, within BACOVA_02265 at 41.553 kb on + strand, within BACOVA_02265 at 41.553 kb on + strand, within BACOVA_02265 at 41.553 kb on + strand, within BACOVA_02265 at 41.590 kb on + strand, within BACOVA_02265 at 41.590 kb on + strand, within BACOVA_02265 at 41.590 kb on + strand, within BACOVA_02265 at 41.591 kb on - strand, within BACOVA_02265 at 41.598 kb on + strand, within BACOVA_02265 at 41.598 kb on + strand, within BACOVA_02265 at 41.599 kb on - strand, within BACOVA_02265 at 41.599 kb on - strand, within BACOVA_02265 at 41.599 kb on - strand, within BACOVA_02265 at 41.599 kb on - strand, within BACOVA_02265 at 41.645 kb on - strand, within BACOVA_02265 at 41.649 kb on + strand, within BACOVA_02265 at 41.649 kb on + strand, within BACOVA_02265 at 41.649 kb on + strand, within BACOVA_02265 at 41.649 kb on + strand, within BACOVA_02265 at 41.650 kb on - strand, within BACOVA_02265 at 41.650 kb on - strand, within BACOVA_02265 at 41.670 kb on + strand at 41.676 kb on - strand at 41.676 kb on - strand at 41.695 kb on - strand at 41.695 kb on - strand at 41.713 kb on - strand at 41.748 kb on - strand at 41.772 kb on - strand at 41.777 kb on - strand at 41.925 kb on + strand, within BACOVA_02266 at 41.941 kb on + strand, within BACOVA_02266 at 41.944 kb on + strand, within BACOVA_02266 at 41.944 kb on + strand, within BACOVA_02266 at 41.944 kb on + strand, within BACOVA_02266 at 41.945 kb on - strand, within BACOVA_02266 at 41.945 kb on - strand, within BACOVA_02266 at 41.945 kb on - strand, within BACOVA_02266 at 41.954 kb on + strand, within BACOVA_02266 at 41.955 kb on - strand, within BACOVA_02266 at 42.046 kb on + strand, within BACOVA_02266 at 42.046 kb on + strand, within BACOVA_02266 at 42.046 kb on + strand, within BACOVA_02266 at 42.048 kb on + strand, within BACOVA_02266 at 42.049 kb on - strand, within BACOVA_02266 at 42.059 kb on - strand, within BACOVA_02266 at 42.082 kb on - strand, within BACOVA_02266 at 42.096 kb on - strand, within BACOVA_02266 at 42.100 kb on - strand, within BACOVA_02266 at 42.100 kb on - strand, within BACOVA_02266 at 42.109 kb on + strand, within BACOVA_02266 at 42.133 kb on + strand, within BACOVA_02266 at 42.133 kb on + strand, within BACOVA_02266 at 42.151 kb on + strand, within BACOVA_02266 at 42.170 kb on + strand, within BACOVA_02266 at 42.170 kb on + strand, within BACOVA_02266 at 42.174 kb on + strand, within BACOVA_02266 at 42.213 kb on - strand, within BACOVA_02266 at 42.213 kb on - strand, within BACOVA_02266 at 42.238 kb on + strand, within BACOVA_02266 at 42.238 kb on + strand, within BACOVA_02266 at 42.322 kb on - strand, within BACOVA_02266 at 42.329 kb on - strand, within BACOVA_02266 at 42.332 kb on + strand, within BACOVA_02266 at 42.332 kb on + strand, within BACOVA_02266 at 42.333 kb on - strand, within BACOVA_02266 at 42.333 kb on - strand, within BACOVA_02266 at 42.337 kb on + strand, within BACOVA_02266 at 42.337 kb on + strand, within BACOVA_02266 at 42.338 kb on - strand, within BACOVA_02266 at 42.340 kb on - strand, within BACOVA_02266 at 42.409 kb on + strand, within BACOVA_02266 at 42.409 kb on + strand, within BACOVA_02266 at 42.409 kb on + strand, within BACOVA_02266 at 42.410 kb on - strand, within BACOVA_02266 at 42.411 kb on + strand, within BACOVA_02266 at 42.411 kb on + strand, within BACOVA_02266 at 42.423 kb on + strand, within BACOVA_02266 at 42.424 kb on - strand, within BACOVA_02266 at 42.446 kb on - strand, within BACOVA_02266 at 42.449 kb on - strand, within BACOVA_02266 at 42.533 kb on - strand, within BACOVA_02266 at 42.542 kb on + strand, within BACOVA_02266 at 42.543 kb on - strand, within BACOVA_02266 at 42.557 kb on + strand, within BACOVA_02266 at 42.560 kb on + strand, within BACOVA_02266 at 42.561 kb on - strand, within BACOVA_02266 at 42.617 kb on + strand, within BACOVA_02266 at 42.643 kb on - strand at 42.643 kb on - strand at 42.652 kb on - strand at 42.722 kb on + strand at 42.722 kb on + strand at 42.738 kb on + strand at 42.790 kb on + strand at 42.790 kb on + strand at 42.790 kb on + strand at 42.790 kb on + strand at 42.791 kb on - strand at 42.791 kb on - strand at 42.865 kb on + strand at 42.872 kb on + strand at 42.876 kb on + strand at 42.877 kb on - strand at 42.918 kb on - strand, within BACOVA_02267 at 42.959 kb on + strand, within BACOVA_02267 at 43.001 kb on + strand, within BACOVA_02267 at 43.001 kb on + strand, within BACOVA_02267 at 43.001 kb on + strand, within BACOVA_02267 at 43.002 kb on - strand, within BACOVA_02267 at 43.002 kb on - strand, within BACOVA_02267 at 43.004 kb on - strand, within BACOVA_02267 at 43.012 kb on + strand, within BACOVA_02267 at 43.012 kb on + strand, within BACOVA_02267 at 43.043 kb on - strand, within BACOVA_02267 at 43.092 kb on + strand, within BACOVA_02267 at 43.157 kb on - strand, within BACOVA_02267 at 43.158 kb on + strand, within BACOVA_02267 at 43.158 kb on + strand, within BACOVA_02267 at 43.158 kb on + strand, within BACOVA_02267 at 43.159 kb on - strand, within BACOVA_02267 at 43.167 kb on + strand, within BACOVA_02267 at 43.167 kb on + strand, within BACOVA_02267 at 43.167 kb on + strand, within BACOVA_02267 at 43.168 kb on - strand, within BACOVA_02267 at 43.169 kb on + strand, within BACOVA_02267 at 43.209 kb on - strand, within BACOVA_02267 at 43.217 kb on + strand, within BACOVA_02267 at 43.217 kb on + strand, within BACOVA_02267 at 43.224 kb on + strand, within BACOVA_02267 at 43.224 kb on + strand, within BACOVA_02267 at 43.265 kb on + strand, within BACOVA_02267 at 43.320 kb on - strand, within BACOVA_02267 at 43.367 kb on - strand, within BACOVA_02267 at 43.371 kb on + strand, within BACOVA_02267 at 43.372 kb on - strand, within BACOVA_02267 at 43.372 kb on - strand, within BACOVA_02267 at 43.472 kb on + strand, within BACOVA_02267 at 43.472 kb on + strand, within BACOVA_02267 at 43.473 kb on - strand, within BACOVA_02267 at 43.502 kb on + strand, within BACOVA_02267 at 43.502 kb on + strand, within BACOVA_02267 at 43.503 kb on - strand, within BACOVA_02267 at 43.503 kb on - strand, within BACOVA_02267 at 43.503 kb on - strand, within BACOVA_02267 at 43.503 kb on - strand, within BACOVA_02267 at 43.522 kb on + strand, within BACOVA_02267 at 43.522 kb on + strand, within BACOVA_02267 at 43.523 kb on - strand, within BACOVA_02267 at 43.566 kb on + strand, within BACOVA_02267 at 43.573 kb on - strand, within BACOVA_02267 at 43.573 kb on - strand, within BACOVA_02267 at 43.573 kb on - strand, within BACOVA_02267 at 43.604 kb on + strand, within BACOVA_02267 at 43.607 kb on - strand, within BACOVA_02267
Per-strain Table
Position Strand Gene LocusTag Fraction b-glucan from Barley 2.5 mg/ml (C) remove 40,859 - BACOVA_02264 0.76 +1.6 40,872 + BACOVA_02264 0.77 +0.6 40,897 + BACOVA_02264 0.79 +2.2 40,921 - BACOVA_02264 0.81 -0.3 40,921 - BACOVA_02264 0.81 -0.8 40,921 - BACOVA_02264 0.81 -0.7 40,936 + BACOVA_02264 0.82 +1.2 40,937 - BACOVA_02264 0.82 -1.2 40,987 + BACOVA_02264 0.85 +1.4 40,998 + BACOVA_02264 0.86 +0.9 40,999 - BACOVA_02264 0.86 +0.6 41,065 - -0.9 41,080 - +0.3 41,101 - -0.2 41,119 + +1.4 41,119 + -0.8 41,120 - +1.6 41,120 - +3.2 41,157 + -0.9 41,161 + -0.7 41,195 + -2.0 41,240 + -0.2 41,240 + -0.6 41,243 - -1.8 41,245 + -2.6 41,246 - +1.2 41,252 - -0.9 41,270 + -0.3 41,295 + +0.2 41,307 - -0.2 41,315 - -1.6 41,315 - -0.3 41,342 + BACOVA_02265 0.11 +0.2 41,342 + BACOVA_02265 0.11 +2.8 41,355 + BACOVA_02265 0.14 +1.2 41,356 - BACOVA_02265 0.14 +0.7 41,388 + BACOVA_02265 0.22 -0.4 41,389 - BACOVA_02265 0.22 +2.4 41,408 - BACOVA_02265 0.27 -0.4 41,408 - BACOVA_02265 0.27 -0.9 41,410 - BACOVA_02265 0.28 +0.1 41,410 - BACOVA_02265 0.28 +1.3 41,410 - BACOVA_02265 0.28 -0.4 41,413 - BACOVA_02265 0.28 +1.4 41,437 + BACOVA_02265 0.34 +0.7 41,437 + BACOVA_02265 0.34 +2.4 41,438 - BACOVA_02265 0.34 +0.2 41,439 + BACOVA_02265 0.35 +1.3 41,439 + BACOVA_02265 0.35 -0.1 41,440 - BACOVA_02265 0.35 -1.2 41,454 + BACOVA_02265 0.38 +1.7 41,454 + BACOVA_02265 0.38 -0.3 41,455 - BACOVA_02265 0.38 -0.4 41,455 - BACOVA_02265 0.38 +0.2 41,455 - BACOVA_02265 0.38 +2.1 41,470 - BACOVA_02265 0.42 +0.7 41,551 + BACOVA_02265 0.62 -1.2 41,553 + BACOVA_02265 0.62 -1.2 41,553 + BACOVA_02265 0.62 +0.6 41,553 + BACOVA_02265 0.62 -0.0 41,590 + BACOVA_02265 0.71 +1.2 41,590 + BACOVA_02265 0.71 -0.4 41,590 + BACOVA_02265 0.71 -0.0 41,591 - BACOVA_02265 0.71 -0.3 41,598 + BACOVA_02265 0.73 -0.3 41,598 + BACOVA_02265 0.73 -1.4 41,599 - BACOVA_02265 0.73 +0.2 41,599 - BACOVA_02265 0.73 -0.1 41,599 - BACOVA_02265 0.73 +0.6 41,599 - BACOVA_02265 0.73 +0.9 41,645 - BACOVA_02265 0.84 +1.6 41,649 + BACOVA_02265 0.85 +1.4 41,649 + BACOVA_02265 0.85 -1.0 41,649 + BACOVA_02265 0.85 -0.1 41,649 + BACOVA_02265 0.85 -1.0 41,650 - BACOVA_02265 0.86 +1.2 41,650 - BACOVA_02265 0.86 +0.8 41,670 + -1.4 41,676 - +0.4 41,676 - +0.3 41,695 - +1.2 41,695 - -0.3 41,713 - +0.2 41,748 - +1.6 41,772 - +0.5 41,777 - +2.1 41,925 + BACOVA_02266 0.15 -2.4 41,941 + BACOVA_02266 0.17 +1.2 41,944 + BACOVA_02266 0.17 -1.7 41,944 + BACOVA_02266 0.17 +0.7 41,944 + BACOVA_02266 0.17 +0.6 41,945 - BACOVA_02266 0.17 -1.4 41,945 - BACOVA_02266 0.17 -1.0 41,945 - BACOVA_02266 0.17 -0.1 41,954 + BACOVA_02266 0.18 -1.2 41,955 - BACOVA_02266 0.18 -0.3 42,046 + BACOVA_02266 0.28 +0.8 42,046 + BACOVA_02266 0.28 -3.4 42,046 + BACOVA_02266 0.28 +0.6 42,048 + BACOVA_02266 0.28 +0.4 42,049 - BACOVA_02266 0.28 +0.4 42,059 - BACOVA_02266 0.29 -1.7 42,082 - BACOVA_02266 0.32 -0.6 42,096 - BACOVA_02266 0.33 -1.8 42,100 - BACOVA_02266 0.34 -0.2 42,100 - BACOVA_02266 0.34 +0.6 42,109 + BACOVA_02266 0.34 -1.4 42,133 + BACOVA_02266 0.37 -1.4 42,133 + BACOVA_02266 0.37 -0.4 42,151 + BACOVA_02266 0.39 +0.2 42,170 + BACOVA_02266 0.41 -0.8 42,170 + BACOVA_02266 0.41 -0.4 42,174 + BACOVA_02266 0.41 -1.9 42,213 - BACOVA_02266 0.45 -2.0 42,213 - BACOVA_02266 0.45 +2.1 42,238 + BACOVA_02266 0.48 -0.2 42,238 + BACOVA_02266 0.48 -0.1 42,322 - BACOVA_02266 0.57 +0.6 42,329 - BACOVA_02266 0.58 -1.5 42,332 + BACOVA_02266 0.58 -1.9 42,332 + BACOVA_02266 0.58 +1.9 42,333 - BACOVA_02266 0.58 -1.2 42,333 - BACOVA_02266 0.58 +1.3 42,337 + BACOVA_02266 0.58 -1.2 42,337 + BACOVA_02266 0.58 +0.5 42,338 - BACOVA_02266 0.58 -0.4 42,340 - BACOVA_02266 0.59 +0.2 42,409 + BACOVA_02266 0.66 +1.2 42,409 + BACOVA_02266 0.66 -1.2 42,409 + BACOVA_02266 0.66 +0.9 42,410 - BACOVA_02266 0.66 -2.8 42,411 + BACOVA_02266 0.66 -0.8 42,411 + BACOVA_02266 0.66 +0.6 42,423 + BACOVA_02266 0.67 -1.6 42,424 - BACOVA_02266 0.68 -1.7 42,446 - BACOVA_02266 0.70 -0.8 42,449 - BACOVA_02266 0.70 -0.8 42,533 - BACOVA_02266 0.79 -0.0 42,542 + BACOVA_02266 0.80 -3.4 42,543 - BACOVA_02266 0.80 -1.4 42,557 + BACOVA_02266 0.81 -1.2 42,560 + BACOVA_02266 0.82 -0.1 42,561 - BACOVA_02266 0.82 +2.5 42,617 + BACOVA_02266 0.88 -1.6 42,643 - -1.4 42,643 - +0.4 42,652 - -0.8 42,722 + -2.5 42,722 + +0.1 42,738 + -1.2 42,790 + -0.7 42,790 + -2.3 42,790 + -1.3 42,790 + -0.3 42,791 - -2.4 42,791 - +1.3 42,865 + -1.2 42,872 + -1.1 42,876 + -0.8 42,877 - +0.4 42,918 - BACOVA_02267 0.13 +0.5 42,959 + BACOVA_02267 0.16 +0.6 43,001 + BACOVA_02267 0.19 +1.2 43,001 + BACOVA_02267 0.19 -0.0 43,001 + BACOVA_02267 0.19 -1.4 43,002 - BACOVA_02267 0.19 -0.5 43,002 - BACOVA_02267 0.19 +0.9 43,004 - BACOVA_02267 0.19 -0.1 43,012 + BACOVA_02267 0.19 -1.2 43,012 + BACOVA_02267 0.19 +1.2 43,043 - BACOVA_02267 0.22 +0.4 43,092 + BACOVA_02267 0.25 +0.4 43,157 - BACOVA_02267 0.30 +0.2 43,158 + BACOVA_02267 0.30 -1.3 43,158 + BACOVA_02267 0.30 -1.3 43,158 + BACOVA_02267 0.30 -0.3 43,159 - BACOVA_02267 0.30 +0.4 43,167 + BACOVA_02267 0.30 -0.6 43,167 + BACOVA_02267 0.30 +1.2 43,167 + BACOVA_02267 0.30 -0.4 43,168 - BACOVA_02267 0.30 +0.2 43,169 + BACOVA_02267 0.30 -0.4 43,209 - BACOVA_02267 0.33 +1.3 43,217 + BACOVA_02267 0.34 -1.4 43,217 + BACOVA_02267 0.34 +1.2 43,224 + BACOVA_02267 0.34 -1.2 43,224 + BACOVA_02267 0.34 +1.5 43,265 + BACOVA_02267 0.37 -2.0 43,320 - BACOVA_02267 0.41 -0.3 43,367 - BACOVA_02267 0.44 -1.4 43,371 + BACOVA_02267 0.45 -0.5 43,372 - BACOVA_02267 0.45 +1.4 43,372 - BACOVA_02267 0.45 -2.0 43,472 + BACOVA_02267 0.52 -1.8 43,472 + BACOVA_02267 0.52 +0.2 43,473 - BACOVA_02267 0.52 -0.2 43,502 + BACOVA_02267 0.54 -0.1 43,502 + BACOVA_02267 0.54 -1.2 43,503 - BACOVA_02267 0.54 +1.4 43,503 - BACOVA_02267 0.54 -0.3 43,503 - BACOVA_02267 0.54 -1.8 43,503 - BACOVA_02267 0.54 -0.3 43,522 + BACOVA_02267 0.55 -2.5 43,522 + BACOVA_02267 0.55 -1.3 43,523 - BACOVA_02267 0.55 -0.4 43,566 + BACOVA_02267 0.58 -0.2 43,573 - BACOVA_02267 0.59 -0.2 43,573 - BACOVA_02267 0.59 -1.2 43,573 - BACOVA_02267 0.59 -1.4 43,604 + BACOVA_02267 0.61 +0.7 43,607 - BACOVA_02267 0.61 -0.8
Or see this region's nucleotide sequence