Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02088

Experiment: b-glucan from Barley 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02086 and BACOVA_02087 are separated by 101 nucleotidesBACOVA_02087 and BACOVA_02088 overlap by 28 nucleotidesBACOVA_02088 and BACOVA_02089 are separated by 12 nucleotides BACOVA_02086: BACOVA_02086 - thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein, at 415,675 to 416,685 _02086 BACOVA_02087: BACOVA_02087 - hypothetical protein, at 416,787 to 416,987 _02087 BACOVA_02088: BACOVA_02088 - N-acylglucosamine 2-epimerase, at 416,960 to 418,150 _02088 BACOVA_02089: BACOVA_02089 - transporter, major facilitator family protein, at 418,163 to 419,536 _02089 Position (kb) 416 417 418 419Strain fitness (log2 ratio) -2 -1 0 1 2 3at 416.047 kb on - strand, within BACOVA_02086at 416.050 kb on + strand, within BACOVA_02086at 416.072 kb on - strand, within BACOVA_02086at 416.191 kb on - strand, within BACOVA_02086at 416.223 kb on - strand, within BACOVA_02086at 416.343 kb on + strand, within BACOVA_02086at 416.343 kb on + strand, within BACOVA_02086at 416.344 kb on - strand, within BACOVA_02086at 416.344 kb on - strand, within BACOVA_02086at 416.348 kb on - strand, within BACOVA_02086at 416.496 kb on + strand, within BACOVA_02086at 416.496 kb on + strand, within BACOVA_02086at 416.497 kb on - strand, within BACOVA_02086at 416.581 kb on + strand, within BACOVA_02086at 416.683 kb on + strandat 416.701 kb on + strandat 416.702 kb on - strandat 416.704 kb on + strandat 416.705 kb on - strandat 416.754 kb on + strandat 416.758 kb on + strandat 416.759 kb on - strandat 416.804 kb on + strandat 416.975 kb on + strandat 416.983 kb on + strandat 416.984 kb on - strandat 416.984 kb on - strandat 416.989 kb on + strandat 416.990 kb on - strandat 416.990 kb on - strandat 417.004 kb on - strandat 417.029 kb on - strandat 417.090 kb on + strand, within BACOVA_02088at 417.090 kb on + strand, within BACOVA_02088at 417.091 kb on - strand, within BACOVA_02088at 417.146 kb on + strand, within BACOVA_02088at 417.147 kb on - strand, within BACOVA_02088at 417.170 kb on + strand, within BACOVA_02088at 417.171 kb on - strand, within BACOVA_02088at 417.229 kb on + strand, within BACOVA_02088at 417.315 kb on + strand, within BACOVA_02088at 417.315 kb on + strand, within BACOVA_02088at 417.316 kb on - strand, within BACOVA_02088at 417.353 kb on + strand, within BACOVA_02088at 417.354 kb on - strand, within BACOVA_02088at 417.374 kb on - strand, within BACOVA_02088at 417.402 kb on + strand, within BACOVA_02088at 417.402 kb on + strand, within BACOVA_02088at 417.403 kb on - strand, within BACOVA_02088at 417.407 kb on + strand, within BACOVA_02088at 417.407 kb on + strand, within BACOVA_02088at 417.409 kb on + strand, within BACOVA_02088at 417.409 kb on + strand, within BACOVA_02088at 417.410 kb on - strand, within BACOVA_02088at 417.410 kb on - strand, within BACOVA_02088at 417.412 kb on + strand, within BACOVA_02088at 417.412 kb on - strand, within BACOVA_02088at 417.418 kb on - strand, within BACOVA_02088at 417.418 kb on - strand, within BACOVA_02088at 417.470 kb on - strand, within BACOVA_02088at 417.475 kb on + strand, within BACOVA_02088at 417.476 kb on - strand, within BACOVA_02088at 417.490 kb on - strand, within BACOVA_02088at 417.500 kb on - strand, within BACOVA_02088at 417.503 kb on - strand, within BACOVA_02088at 417.505 kb on + strand, within BACOVA_02088at 417.506 kb on - strand, within BACOVA_02088at 417.556 kb on + strand, within BACOVA_02088at 417.584 kb on - strand, within BACOVA_02088at 417.628 kb on + strand, within BACOVA_02088at 417.628 kb on + strand, within BACOVA_02088at 417.628 kb on + strand, within BACOVA_02088at 417.629 kb on - strand, within BACOVA_02088at 417.629 kb on - strand, within BACOVA_02088at 417.636 kb on - strand, within BACOVA_02088at 417.636 kb on - strand, within BACOVA_02088at 417.669 kb on + strand, within BACOVA_02088at 417.766 kb on - strand, within BACOVA_02088at 417.781 kb on - strand, within BACOVA_02088at 417.785 kb on - strand, within BACOVA_02088at 417.801 kb on + strand, within BACOVA_02088at 417.801 kb on + strand, within BACOVA_02088at 417.801 kb on + strand, within BACOVA_02088at 417.801 kb on + strand, within BACOVA_02088at 417.801 kb on + strand, within BACOVA_02088at 417.801 kb on + strand, within BACOVA_02088at 417.802 kb on - strand, within BACOVA_02088at 417.802 kb on - strand, within BACOVA_02088at 417.842 kb on + strand, within BACOVA_02088at 417.843 kb on - strand, within BACOVA_02088at 417.876 kb on + strand, within BACOVA_02088at 417.924 kb on + strand, within BACOVA_02088at 417.924 kb on + strand, within BACOVA_02088at 418.093 kb on + strandat 418.102 kb on + strandat 418.102 kb on + strandat 418.139 kb on - strandat 418.139 kb on - strandat 418.156 kb on + strandat 418.244 kb on + strandat 418.261 kb on + strandat 418.261 kb on + strandat 418.261 kb on + strandat 418.265 kb on + strandat 418.266 kb on - strandat 418.266 kb on - strandat 418.297 kb on + strandat 418.480 kb on - strand, within BACOVA_02089at 418.525 kb on + strand, within BACOVA_02089at 418.525 kb on + strand, within BACOVA_02089at 418.526 kb on - strand, within BACOVA_02089at 418.526 kb on - strand, within BACOVA_02089at 418.529 kb on + strand, within BACOVA_02089at 418.530 kb on - strand, within BACOVA_02089at 418.575 kb on + strand, within BACOVA_02089at 418.610 kb on - strand, within BACOVA_02089at 418.618 kb on + strand, within BACOVA_02089at 418.619 kb on - strand, within BACOVA_02089at 418.621 kb on - strand, within BACOVA_02089at 418.621 kb on - strand, within BACOVA_02089at 418.621 kb on - strand, within BACOVA_02089at 418.621 kb on - strand, within BACOVA_02089at 418.678 kb on + strand, within BACOVA_02089at 418.678 kb on + strand, within BACOVA_02089at 418.704 kb on + strand, within BACOVA_02089at 418.718 kb on + strand, within BACOVA_02089at 418.729 kb on + strand, within BACOVA_02089at 418.730 kb on - strand, within BACOVA_02089at 418.733 kb on + strand, within BACOVA_02089at 418.774 kb on - strand, within BACOVA_02089at 418.786 kb on - strand, within BACOVA_02089at 418.913 kb on + strand, within BACOVA_02089at 418.915 kb on + strand, within BACOVA_02089at 418.916 kb on - strand, within BACOVA_02089at 418.966 kb on + strand, within BACOVA_02089at 418.988 kb on + strand, within BACOVA_02089at 418.989 kb on - strand, within BACOVA_02089at 418.989 kb on - strand, within BACOVA_02089at 419.007 kb on + strand, within BACOVA_02089at 419.007 kb on + strand, within BACOVA_02089at 419.008 kb on - strand, within BACOVA_02089at 419.008 kb on - strand, within BACOVA_02089at 419.044 kb on + strand, within BACOVA_02089at 419.083 kb on - strand, within BACOVA_02089at 419.091 kb on - strand, within BACOVA_02089at 419.091 kb on - strand, within BACOVA_02089at 419.111 kb on + strand, within BACOVA_02089at 419.112 kb on - strand, within BACOVA_02089at 419.141 kb on + strand, within BACOVA_02089

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Per-strain Table

Position Strand Gene LocusTag Fraction b-glucan from Barley 2.5 mg/ml (C)
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416,047 - BACOVA_02086 0.37 -0.3
416,050 + BACOVA_02086 0.37 -0.1
416,072 - BACOVA_02086 0.39 -2.1
416,191 - BACOVA_02086 0.51 -1.1
416,223 - BACOVA_02086 0.54 -1.7
416,343 + BACOVA_02086 0.66 -2.6
416,343 + BACOVA_02086 0.66 -0.8
416,344 - BACOVA_02086 0.66 +0.5
416,344 - BACOVA_02086 0.66 -0.6
416,348 - BACOVA_02086 0.67 +0.5
416,496 + BACOVA_02086 0.81 -0.5
416,496 + BACOVA_02086 0.81 -0.8
416,497 - BACOVA_02086 0.81 +0.5
416,581 + BACOVA_02086 0.90 +1.5
416,683 + +0.5
416,701 + -0.1
416,702 - -1.1
416,704 + -0.1
416,705 - +0.8
416,754 + -0.2
416,758 + -1.5
416,759 - +1.5
416,804 + +0.7
416,975 + +0.1
416,983 + +1.0
416,984 - +0.5
416,984 - +0.6
416,989 + -1.0
416,990 - -1.0
416,990 - -0.5
417,004 - -1.4
417,029 - +0.0
417,090 + BACOVA_02088 0.11 +0.3
417,090 + BACOVA_02088 0.11 +0.8
417,091 - BACOVA_02088 0.11 -0.1
417,146 + BACOVA_02088 0.16 +0.3
417,147 - BACOVA_02088 0.16 -0.4
417,170 + BACOVA_02088 0.18 -1.2
417,171 - BACOVA_02088 0.18 -0.1
417,229 + BACOVA_02088 0.23 -0.8
417,315 + BACOVA_02088 0.30 -1.8
417,315 + BACOVA_02088 0.30 +1.3
417,316 - BACOVA_02088 0.30 -0.1
417,353 + BACOVA_02088 0.33 -2.5
417,354 - BACOVA_02088 0.33 +0.6
417,374 - BACOVA_02088 0.35 +2.3
417,402 + BACOVA_02088 0.37 +1.9
417,402 + BACOVA_02088 0.37 +0.9
417,403 - BACOVA_02088 0.37 +3.0
417,407 + BACOVA_02088 0.38 +0.5
417,407 + BACOVA_02088 0.38 +0.2
417,409 + BACOVA_02088 0.38 +0.4
417,409 + BACOVA_02088 0.38 +0.1
417,410 - BACOVA_02088 0.38 -0.5
417,410 - BACOVA_02088 0.38 +1.2
417,412 + BACOVA_02088 0.38 -1.0
417,412 - BACOVA_02088 0.38 +0.2
417,418 - BACOVA_02088 0.38 -2.5
417,418 - BACOVA_02088 0.38 +0.0
417,470 - BACOVA_02088 0.43 -0.1
417,475 + BACOVA_02088 0.43 +1.4
417,476 - BACOVA_02088 0.43 -1.4
417,490 - BACOVA_02088 0.45 -0.6
417,500 - BACOVA_02088 0.45 +1.0
417,503 - BACOVA_02088 0.46 +0.4
417,505 + BACOVA_02088 0.46 +1.1
417,506 - BACOVA_02088 0.46 -0.6
417,556 + BACOVA_02088 0.50 +0.8
417,584 - BACOVA_02088 0.52 +0.3
417,628 + BACOVA_02088 0.56 -0.0
417,628 + BACOVA_02088 0.56 +1.9
417,628 + BACOVA_02088 0.56 -0.7
417,629 - BACOVA_02088 0.56 +1.2
417,629 - BACOVA_02088 0.56 +0.2
417,636 - BACOVA_02088 0.57 -2.6
417,636 - BACOVA_02088 0.57 +0.3
417,669 + BACOVA_02088 0.60 -1.5
417,766 - BACOVA_02088 0.68 -0.7
417,781 - BACOVA_02088 0.69 +0.5
417,785 - BACOVA_02088 0.69 -0.7
417,801 + BACOVA_02088 0.71 -0.4
417,801 + BACOVA_02088 0.71 +2.1
417,801 + BACOVA_02088 0.71 +0.2
417,801 + BACOVA_02088 0.71 +1.5
417,801 + BACOVA_02088 0.71 +1.2
417,801 + BACOVA_02088 0.71 +0.1
417,802 - BACOVA_02088 0.71 +1.8
417,802 - BACOVA_02088 0.71 +0.9
417,842 + BACOVA_02088 0.74 -0.2
417,843 - BACOVA_02088 0.74 +1.8
417,876 + BACOVA_02088 0.77 -1.7
417,924 + BACOVA_02088 0.81 -0.2
417,924 + BACOVA_02088 0.81 -1.5
418,093 + -0.1
418,102 + +0.7
418,102 + -0.3
418,139 - -0.3
418,139 - -0.9
418,156 + +1.9
418,244 + -0.1
418,261 + +0.5
418,261 + -0.3
418,261 + -0.3
418,265 + +1.5
418,266 - +0.2
418,266 - +0.5
418,297 + -2.0
418,480 - BACOVA_02089 0.23 +0.1
418,525 + BACOVA_02089 0.26 -1.1
418,525 + BACOVA_02089 0.26 -1.2
418,526 - BACOVA_02089 0.26 -2.2
418,526 - BACOVA_02089 0.26 +2.0
418,529 + BACOVA_02089 0.27 +1.1
418,530 - BACOVA_02089 0.27 +1.8
418,575 + BACOVA_02089 0.30 +1.9
418,610 - BACOVA_02089 0.33 -2.7
418,618 + BACOVA_02089 0.33 +1.9
418,619 - BACOVA_02089 0.33 -0.2
418,621 - BACOVA_02089 0.33 +0.7
418,621 - BACOVA_02089 0.33 -0.5
418,621 - BACOVA_02089 0.33 +0.6
418,621 - BACOVA_02089 0.33 +0.6
418,678 + BACOVA_02089 0.37 -1.1
418,678 + BACOVA_02089 0.37 +0.6
418,704 + BACOVA_02089 0.39 -1.6
418,718 + BACOVA_02089 0.40 +0.5
418,729 + BACOVA_02089 0.41 -0.9
418,730 - BACOVA_02089 0.41 -0.2
418,733 + BACOVA_02089 0.41 -0.8
418,774 - BACOVA_02089 0.44 +0.0
418,786 - BACOVA_02089 0.45 +0.6
418,913 + BACOVA_02089 0.55 -0.1
418,915 + BACOVA_02089 0.55 -0.1
418,916 - BACOVA_02089 0.55 -0.8
418,966 + BACOVA_02089 0.58 -1.4
418,988 + BACOVA_02089 0.60 -1.0
418,989 - BACOVA_02089 0.60 -0.3
418,989 - BACOVA_02089 0.60 -0.5
419,007 + BACOVA_02089 0.61 -0.1
419,007 + BACOVA_02089 0.61 -0.1
419,008 - BACOVA_02089 0.61 +0.3
419,008 - BACOVA_02089 0.61 -0.4
419,044 + BACOVA_02089 0.64 -0.8
419,083 - BACOVA_02089 0.67 +0.5
419,091 - BACOVA_02089 0.68 -1.4
419,091 - BACOVA_02089 0.68 -0.3
419,111 + BACOVA_02089 0.69 +1.5
419,112 - BACOVA_02089 0.69 -0.3
419,141 + BACOVA_02089 0.71 +0.5

Or see this region's nucleotide sequence