Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01764

Experiment: b-glucan from Barley 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_01762 and BACOVA_01763 are separated by 28 nucleotidesBACOVA_01763 and BACOVA_01764 overlap by 29 nucleotidesBACOVA_01764 and BACOVA_01765 are separated by 163 nucleotidesBACOVA_01765 and BACOVA_01766 are separated by 11 nucleotides BACOVA_01762: BACOVA_01762 - hypothetical protein, at 184,095 to 184,865 _01762 BACOVA_01763: BACOVA_01763 - hypothetical protein, at 184,894 to 185,475 _01763 BACOVA_01764: BACOVA_01764 - hypothetical protein, at 185,447 to 185,563 _01764 BACOVA_01765: BACOVA_01765 - hypothetical protein, at 185,727 to 186,551 _01765 BACOVA_01766: BACOVA_01766 - hypothetical protein, at 186,563 to 188,116 _01766 Position (kb) 185 186Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 184.500 kb on - strand, within BACOVA_01762at 184.502 kb on + strand, within BACOVA_01762at 184.502 kb on + strand, within BACOVA_01762at 184.502 kb on + strand, within BACOVA_01762at 184.502 kb on + strand, within BACOVA_01762at 184.505 kb on + strand, within BACOVA_01762at 184.505 kb on + strand, within BACOVA_01762at 184.506 kb on - strand, within BACOVA_01762at 184.510 kb on + strand, within BACOVA_01762at 184.554 kb on + strand, within BACOVA_01762at 184.555 kb on - strand, within BACOVA_01762at 184.555 kb on - strand, within BACOVA_01762at 184.637 kb on + strand, within BACOVA_01762at 184.638 kb on - strand, within BACOVA_01762at 184.692 kb on - strand, within BACOVA_01762at 184.818 kb on - strandat 184.822 kb on - strandat 184.822 kb on - strandat 184.839 kb on - strandat 184.846 kb on - strandat 184.911 kb on - strandat 184.935 kb on - strandat 184.938 kb on - strandat 184.975 kb on - strand, within BACOVA_01763at 184.980 kb on + strand, within BACOVA_01763at 184.997 kb on + strand, within BACOVA_01763at 185.012 kb on + strand, within BACOVA_01763at 185.025 kb on - strand, within BACOVA_01763at 185.041 kb on - strand, within BACOVA_01763at 185.041 kb on - strand, within BACOVA_01763at 185.061 kb on + strand, within BACOVA_01763at 185.129 kb on + strand, within BACOVA_01763at 185.129 kb on + strand, within BACOVA_01763at 185.160 kb on + strand, within BACOVA_01763at 185.160 kb on + strand, within BACOVA_01763at 185.161 kb on - strand, within BACOVA_01763at 185.161 kb on - strand, within BACOVA_01763at 185.163 kb on + strand, within BACOVA_01763at 185.163 kb on + strand, within BACOVA_01763at 185.236 kb on + strand, within BACOVA_01763at 185.239 kb on - strand, within BACOVA_01763at 185.247 kb on - strand, within BACOVA_01763at 185.319 kb on + strand, within BACOVA_01763at 185.319 kb on + strand, within BACOVA_01763at 185.323 kb on - strand, within BACOVA_01763at 185.323 kb on - strand, within BACOVA_01763at 185.331 kb on + strand, within BACOVA_01763at 185.331 kb on + strand, within BACOVA_01763at 185.350 kb on + strand, within BACOVA_01763at 185.468 kb on + strandat 185.469 kb on - strandat 185.469 kb on - strandat 185.470 kb on + strandat 185.487 kb on + strand, within BACOVA_01764at 185.490 kb on + strand, within BACOVA_01764at 185.491 kb on - strand, within BACOVA_01764at 185.492 kb on + strand, within BACOVA_01764at 185.493 kb on - strand, within BACOVA_01764at 185.494 kb on + strand, within BACOVA_01764at 185.525 kb on - strand, within BACOVA_01764at 185.618 kb on - strandat 185.657 kb on + strandat 185.695 kb on + strandat 185.704 kb on + strandat 185.712 kb on + strandat 185.712 kb on + strandat 185.712 kb on + strandat 185.712 kb on + strandat 185.740 kb on - strandat 185.740 kb on - strandat 185.743 kb on + strandat 185.744 kb on - strandat 185.744 kb on - strandat 185.744 kb on - strandat 185.824 kb on + strand, within BACOVA_01765at 185.856 kb on - strand, within BACOVA_01765at 185.858 kb on - strand, within BACOVA_01765at 185.904 kb on - strand, within BACOVA_01765at 185.941 kb on + strand, within BACOVA_01765at 185.942 kb on - strand, within BACOVA_01765at 185.942 kb on - strand, within BACOVA_01765at 185.969 kb on + strand, within BACOVA_01765at 185.970 kb on - strand, within BACOVA_01765at 185.974 kb on + strand, within BACOVA_01765at 185.975 kb on - strand, within BACOVA_01765at 185.984 kb on - strand, within BACOVA_01765at 186.038 kb on - strand, within BACOVA_01765at 186.042 kb on - strand, within BACOVA_01765at 186.042 kb on - strand, within BACOVA_01765at 186.080 kb on + strand, within BACOVA_01765at 186.084 kb on + strand, within BACOVA_01765at 186.084 kb on + strand, within BACOVA_01765at 186.084 kb on + strand, within BACOVA_01765at 186.085 kb on - strand, within BACOVA_01765at 186.109 kb on - strand, within BACOVA_01765at 186.137 kb on + strand, within BACOVA_01765at 186.138 kb on - strand, within BACOVA_01765at 186.287 kb on + strand, within BACOVA_01765at 186.371 kb on + strand, within BACOVA_01765at 186.371 kb on + strand, within BACOVA_01765at 186.372 kb on - strand, within BACOVA_01765at 186.383 kb on - strand, within BACOVA_01765at 186.385 kb on - strand, within BACOVA_01765at 186.460 kb on + strand, within BACOVA_01765at 186.492 kb on + strandat 186.495 kb on - strandat 186.495 kb on - strandat 186.550 kb on - strandat 186.554 kb on - strandat 186.561 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction b-glucan from Barley 2.5 mg/ml (C)
remove
184,500 - BACOVA_01762 0.53 -1.6
184,502 + BACOVA_01762 0.53 +0.7
184,502 + BACOVA_01762 0.53 -1.9
184,502 + BACOVA_01762 0.53 -1.3
184,502 + BACOVA_01762 0.53 +0.2
184,505 + BACOVA_01762 0.53 +0.0
184,505 + BACOVA_01762 0.53 -0.1
184,506 - BACOVA_01762 0.53 -1.0
184,510 + BACOVA_01762 0.54 -0.6
184,554 + BACOVA_01762 0.60 -0.7
184,555 - BACOVA_01762 0.60 -2.7
184,555 - BACOVA_01762 0.60 -0.5
184,637 + BACOVA_01762 0.70 -1.0
184,638 - BACOVA_01762 0.70 -1.6
184,692 - BACOVA_01762 0.77 +0.6
184,818 - -0.9
184,822 - +1.2
184,822 - -0.4
184,839 - -1.1
184,846 - -0.3
184,911 - -0.3
184,935 - -1.1
184,938 - +0.2
184,975 - BACOVA_01763 0.14 -1.8
184,980 + BACOVA_01763 0.15 -0.6
184,997 + BACOVA_01763 0.18 -1.3
185,012 + BACOVA_01763 0.20 +0.8
185,025 - BACOVA_01763 0.23 -0.9
185,041 - BACOVA_01763 0.25 -1.3
185,041 - BACOVA_01763 0.25 -1.5
185,061 + BACOVA_01763 0.29 -0.6
185,129 + BACOVA_01763 0.40 -1.2
185,129 + BACOVA_01763 0.40 -0.3
185,160 + BACOVA_01763 0.46 -1.8
185,160 + BACOVA_01763 0.46 -0.5
185,161 - BACOVA_01763 0.46 +0.2
185,161 - BACOVA_01763 0.46 -1.6
185,163 + BACOVA_01763 0.46 -1.8
185,163 + BACOVA_01763 0.46 -0.8
185,236 + BACOVA_01763 0.59 -0.1
185,239 - BACOVA_01763 0.59 -1.3
185,247 - BACOVA_01763 0.61 -0.3
185,319 + BACOVA_01763 0.73 -1.7
185,319 + BACOVA_01763 0.73 -1.2
185,323 - BACOVA_01763 0.74 -0.3
185,323 - BACOVA_01763 0.74 +0.7
185,331 + BACOVA_01763 0.75 -3.8
185,331 + BACOVA_01763 0.75 -0.1
185,350 + BACOVA_01763 0.78 -0.8
185,468 + -2.8
185,469 - +1.8
185,469 - -0.3
185,470 + -0.9
185,487 + BACOVA_01764 0.34 -0.3
185,490 + BACOVA_01764 0.37 +0.2
185,491 - BACOVA_01764 0.38 +0.1
185,492 + BACOVA_01764 0.38 -1.0
185,493 - BACOVA_01764 0.39 -1.0
185,494 + BACOVA_01764 0.40 +1.5
185,525 - BACOVA_01764 0.67 -1.8
185,618 - +0.8
185,657 + +0.9
185,695 + -1.3
185,704 + -1.3
185,712 + +1.7
185,712 + +0.9
185,712 + -0.6
185,712 + -1.6
185,740 - +0.5
185,740 - +0.1
185,743 + +2.2
185,744 - -0.9
185,744 - +0.1
185,744 - +3.8
185,824 + BACOVA_01765 0.12 -0.1
185,856 - BACOVA_01765 0.16 +1.0
185,858 - BACOVA_01765 0.16 +3.8
185,904 - BACOVA_01765 0.21 -0.5
185,941 + BACOVA_01765 0.26 -0.4
185,942 - BACOVA_01765 0.26 +0.1
185,942 - BACOVA_01765 0.26 -0.2
185,969 + BACOVA_01765 0.29 +0.7
185,970 - BACOVA_01765 0.29 -0.6
185,974 + BACOVA_01765 0.30 -0.1
185,975 - BACOVA_01765 0.30 -0.2
185,984 - BACOVA_01765 0.31 +1.5
186,038 - BACOVA_01765 0.38 +1.8
186,042 - BACOVA_01765 0.38 -0.1
186,042 - BACOVA_01765 0.38 -0.8
186,080 + BACOVA_01765 0.43 -0.1
186,084 + BACOVA_01765 0.43 +0.2
186,084 + BACOVA_01765 0.43 +0.9
186,084 + BACOVA_01765 0.43 +0.1
186,085 - BACOVA_01765 0.43 +0.2
186,109 - BACOVA_01765 0.46 -0.5
186,137 + BACOVA_01765 0.50 -0.3
186,138 - BACOVA_01765 0.50 -0.0
186,287 + BACOVA_01765 0.68 -0.1
186,371 + BACOVA_01765 0.78 +0.0
186,371 + BACOVA_01765 0.78 +1.2
186,372 - BACOVA_01765 0.78 -1.1
186,383 - BACOVA_01765 0.80 -1.2
186,385 - BACOVA_01765 0.80 -0.9
186,460 + BACOVA_01765 0.89 -2.3
186,492 + -1.3
186,495 - -0.8
186,495 - -0.5
186,550 - +1.2
186,554 - -0.8
186,561 - -2.9

Or see this region's nucleotide sequence