Experiment: b-glucan from Barley 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00122 and BACOVA_00123 are separated by 11 nucleotides BACOVA_00123 and BACOVA_00124 are separated by 6 nucleotides BACOVA_00124 and BACOVA_00125 are separated by 61 nucleotides BACOVA_00125 and BACOVA_00126 overlap by 8 nucleotides
BACOVA_00122: BACOVA_00122 - transcriptional regulator, GntR family, at 169,891 to 170,259
_00122
BACOVA_00123: BACOVA_00123 - hypothetical protein, at 170,271 to 171,092
_00123
BACOVA_00124: BACOVA_00124 - ABC transporter, ATP-binding protein, at 171,099 to 171,944
_00124
BACOVA_00125: BACOVA_00125 - hypothetical protein, at 172,006 to 172,125
_00125
BACOVA_00126: BACOVA_00126 - tetratricopeptide repeat protein, at 172,118 to 173,584
_00126
Position (kb) 171
172 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 170.121 kb on + strand, within BACOVA_00122 at 170.147 kb on + strand, within BACOVA_00122 at 170.147 kb on + strand, within BACOVA_00122 at 170.148 kb on - strand, within BACOVA_00122 at 170.148 kb on - strand, within BACOVA_00122 at 170.198 kb on - strand, within BACOVA_00122 at 170.214 kb on + strand, within BACOVA_00122 at 170.214 kb on + strand, within BACOVA_00122 at 170.232 kb on - strand at 170.236 kb on - strand at 170.264 kb on + strand at 170.264 kb on + strand at 170.265 kb on - strand at 170.269 kb on + strand at 170.270 kb on - strand at 170.279 kb on + strand at 170.285 kb on + strand at 170.300 kb on + strand at 170.404 kb on + strand, within BACOVA_00123 at 170.404 kb on + strand, within BACOVA_00123 at 170.407 kb on + strand, within BACOVA_00123 at 170.408 kb on - strand, within BACOVA_00123 at 170.421 kb on + strand, within BACOVA_00123 at 170.458 kb on + strand, within BACOVA_00123 at 170.458 kb on + strand, within BACOVA_00123 at 170.471 kb on + strand, within BACOVA_00123 at 170.598 kb on + strand, within BACOVA_00123 at 170.603 kb on + strand, within BACOVA_00123 at 170.603 kb on + strand, within BACOVA_00123 at 170.604 kb on - strand, within BACOVA_00123 at 170.608 kb on + strand, within BACOVA_00123 at 170.681 kb on - strand, within BACOVA_00123 at 170.711 kb on + strand, within BACOVA_00123 at 170.711 kb on + strand, within BACOVA_00123 at 170.713 kb on + strand, within BACOVA_00123 at 170.713 kb on + strand, within BACOVA_00123 at 170.714 kb on - strand, within BACOVA_00123 at 170.714 kb on - strand, within BACOVA_00123 at 170.718 kb on + strand, within BACOVA_00123 at 170.747 kb on + strand, within BACOVA_00123 at 170.752 kb on - strand, within BACOVA_00123 at 170.810 kb on + strand, within BACOVA_00123 at 170.810 kb on + strand, within BACOVA_00123 at 170.927 kb on - strand, within BACOVA_00123 at 170.930 kb on + strand, within BACOVA_00123 at 170.930 kb on + strand, within BACOVA_00123 at 170.931 kb on - strand, within BACOVA_00123 at 170.931 kb on - strand, within BACOVA_00123 at 170.932 kb on + strand, within BACOVA_00123 at 170.932 kb on + strand, within BACOVA_00123 at 170.933 kb on - strand, within BACOVA_00123 at 170.936 kb on + strand, within BACOVA_00123 at 170.936 kb on + strand, within BACOVA_00123 at 170.937 kb on - strand, within BACOVA_00123 at 170.937 kb on - strand, within BACOVA_00123 at 170.937 kb on - strand, within BACOVA_00123 at 170.943 kb on - strand, within BACOVA_00123 at 170.943 kb on - strand, within BACOVA_00123 at 170.989 kb on + strand, within BACOVA_00123 at 171.056 kb on + strand at 171.088 kb on - strand at 171.100 kb on + strand at 171.140 kb on + strand at 171.201 kb on - strand, within BACOVA_00124 at 171.228 kb on - strand, within BACOVA_00124 at 171.231 kb on - strand, within BACOVA_00124 at 171.303 kb on - strand, within BACOVA_00124 at 171.392 kb on + strand, within BACOVA_00124 at 171.392 kb on + strand, within BACOVA_00124 at 171.410 kb on + strand, within BACOVA_00124 at 171.423 kb on - strand, within BACOVA_00124 at 171.432 kb on + strand, within BACOVA_00124 at 171.433 kb on - strand, within BACOVA_00124 at 171.434 kb on + strand, within BACOVA_00124 at 171.513 kb on - strand, within BACOVA_00124 at 171.555 kb on - strand, within BACOVA_00124 at 171.575 kb on + strand, within BACOVA_00124 at 171.576 kb on - strand, within BACOVA_00124 at 171.579 kb on + strand, within BACOVA_00124 at 171.579 kb on + strand, within BACOVA_00124 at 171.579 kb on + strand, within BACOVA_00124 at 171.608 kb on + strand, within BACOVA_00124 at 171.623 kb on + strand, within BACOVA_00124 at 171.651 kb on + strand, within BACOVA_00124 at 171.661 kb on + strand, within BACOVA_00124 at 171.661 kb on + strand, within BACOVA_00124 at 171.662 kb on - strand, within BACOVA_00124 at 171.753 kb on - strand, within BACOVA_00124 at 171.806 kb on - strand, within BACOVA_00124 at 171.850 kb on + strand, within BACOVA_00124 at 171.851 kb on - strand, within BACOVA_00124 at 171.851 kb on - strand, within BACOVA_00124 at 171.852 kb on + strand, within BACOVA_00124 at 171.888 kb on + strand at 171.892 kb on - strand at 171.909 kb on - strand at 171.938 kb on + strand at 171.944 kb on + strand at 171.947 kb on + strand at 171.947 kb on + strand at 171.947 kb on + strand at 171.948 kb on - strand at 171.983 kb on + strand at 171.991 kb on + strand at 171.991 kb on + strand at 172.069 kb on - strand, within BACOVA_00125 at 172.120 kb on - strand at 172.167 kb on - strand at 172.167 kb on - strand at 172.188 kb on + strand at 172.188 kb on + strand at 172.189 kb on - strand at 172.194 kb on - strand at 172.201 kb on + strand at 172.210 kb on + strand at 172.210 kb on + strand at 172.246 kb on + strand at 172.247 kb on - strand at 172.247 kb on - strand at 172.260 kb on + strand at 172.263 kb on + strand at 172.263 kb on + strand at 172.278 kb on + strand, within BACOVA_00126 at 172.279 kb on - strand, within BACOVA_00126 at 172.347 kb on + strand, within BACOVA_00126 at 172.347 kb on + strand, within BACOVA_00126 at 172.392 kb on - strand, within BACOVA_00126 at 172.425 kb on + strand, within BACOVA_00126 at 172.426 kb on - strand, within BACOVA_00126 at 172.426 kb on - strand, within BACOVA_00126 at 172.529 kb on - strand, within BACOVA_00126 at 172.540 kb on - strand, within BACOVA_00126 at 172.542 kb on + strand, within BACOVA_00126 at 172.543 kb on - strand, within BACOVA_00126 at 172.550 kb on - strand, within BACOVA_00126 at 172.603 kb on - strand, within BACOVA_00126 at 172.605 kb on + strand, within BACOVA_00126 at 172.633 kb on + strand, within BACOVA_00126 at 172.634 kb on - strand, within BACOVA_00126 at 172.636 kb on - strand, within BACOVA_00126 at 172.654 kb on - strand, within BACOVA_00126 at 172.721 kb on + strand, within BACOVA_00126 at 172.722 kb on - strand, within BACOVA_00126 at 172.722 kb on - strand, within BACOVA_00126 at 172.725 kb on - strand, within BACOVA_00126 at 172.768 kb on - strand, within BACOVA_00126 at 172.771 kb on - strand, within BACOVA_00126 at 172.771 kb on - strand, within BACOVA_00126 at 172.777 kb on - strand, within BACOVA_00126 at 172.791 kb on + strand, within BACOVA_00126 at 172.802 kb on - strand, within BACOVA_00126 at 172.866 kb on + strand, within BACOVA_00126 at 172.867 kb on - strand, within BACOVA_00126 at 172.870 kb on + strand, within BACOVA_00126 at 172.872 kb on + strand, within BACOVA_00126 at 172.924 kb on + strand, within BACOVA_00126 at 172.924 kb on + strand, within BACOVA_00126 at 172.927 kb on + strand, within BACOVA_00126 at 172.928 kb on - strand, within BACOVA_00126
Per-strain Table
Position Strand Gene LocusTag Fraction b-glucan from Barley 2.5 mg/ml (C) remove 170,121 + BACOVA_00122 0.62 +0.4 170,147 + BACOVA_00122 0.69 +0.5 170,147 + BACOVA_00122 0.69 -0.1 170,148 - BACOVA_00122 0.70 -0.8 170,148 - BACOVA_00122 0.70 -1.6 170,198 - BACOVA_00122 0.83 -0.2 170,214 + BACOVA_00122 0.88 +2.5 170,214 + BACOVA_00122 0.88 +0.3 170,232 - +0.9 170,236 - +0.0 170,264 + -0.5 170,264 + -0.8 170,265 - -1.9 170,269 + -0.3 170,270 - -1.5 170,279 + +1.2 170,285 + -0.9 170,300 + -0.8 170,404 + BACOVA_00123 0.16 +1.7 170,404 + BACOVA_00123 0.16 +0.0 170,407 + BACOVA_00123 0.17 +2.1 170,408 - BACOVA_00123 0.17 -0.4 170,421 + BACOVA_00123 0.18 -0.4 170,458 + BACOVA_00123 0.23 -1.6 170,458 + BACOVA_00123 0.23 +1.1 170,471 + BACOVA_00123 0.24 +0.6 170,598 + BACOVA_00123 0.40 -0.1 170,603 + BACOVA_00123 0.40 +1.9 170,603 + BACOVA_00123 0.40 -0.7 170,604 - BACOVA_00123 0.41 -0.4 170,608 + BACOVA_00123 0.41 -0.6 170,681 - BACOVA_00123 0.50 -0.1 170,711 + BACOVA_00123 0.54 +0.5 170,711 + BACOVA_00123 0.54 -0.9 170,713 + BACOVA_00123 0.54 -1.8 170,713 + BACOVA_00123 0.54 -1.0 170,714 - BACOVA_00123 0.54 +0.8 170,714 - BACOVA_00123 0.54 -1.2 170,718 + BACOVA_00123 0.54 -2.9 170,747 + BACOVA_00123 0.58 +1.0 170,752 - BACOVA_00123 0.59 +0.2 170,810 + BACOVA_00123 0.66 -0.2 170,810 + BACOVA_00123 0.66 +0.7 170,927 - BACOVA_00123 0.80 -0.9 170,930 + BACOVA_00123 0.80 -0.5 170,930 + BACOVA_00123 0.80 +0.2 170,931 - BACOVA_00123 0.80 +0.7 170,931 - BACOVA_00123 0.80 +0.5 170,932 + BACOVA_00123 0.80 -0.3 170,932 + BACOVA_00123 0.80 +0.8 170,933 - BACOVA_00123 0.81 -1.4 170,936 + BACOVA_00123 0.81 -1.5 170,936 + BACOVA_00123 0.81 -0.8 170,937 - BACOVA_00123 0.81 -1.4 170,937 - BACOVA_00123 0.81 -0.9 170,937 - BACOVA_00123 0.81 +0.3 170,943 - BACOVA_00123 0.82 +1.5 170,943 - BACOVA_00123 0.82 +0.0 170,989 + BACOVA_00123 0.87 +0.5 171,056 + +0.5 171,088 - -0.4 171,100 + -0.5 171,140 + +2.1 171,201 - BACOVA_00124 0.12 -0.1 171,228 - BACOVA_00124 0.15 -0.4 171,231 - BACOVA_00124 0.16 +2.1 171,303 - BACOVA_00124 0.24 -0.2 171,392 + BACOVA_00124 0.35 +0.2 171,392 + BACOVA_00124 0.35 -1.7 171,410 + BACOVA_00124 0.37 +1.1 171,423 - BACOVA_00124 0.38 +0.6 171,432 + BACOVA_00124 0.39 +1.0 171,433 - BACOVA_00124 0.39 +0.1 171,434 + BACOVA_00124 0.40 -0.1 171,513 - BACOVA_00124 0.49 +0.5 171,555 - BACOVA_00124 0.54 -0.1 171,575 + BACOVA_00124 0.56 +0.1 171,576 - BACOVA_00124 0.56 +1.0 171,579 + BACOVA_00124 0.57 -1.7 171,579 + BACOVA_00124 0.57 -2.1 171,579 + BACOVA_00124 0.57 -0.0 171,608 + BACOVA_00124 0.60 +0.6 171,623 + BACOVA_00124 0.62 +0.9 171,651 + BACOVA_00124 0.65 +1.1 171,661 + BACOVA_00124 0.66 +1.0 171,661 + BACOVA_00124 0.66 +1.2 171,662 - BACOVA_00124 0.67 +1.7 171,753 - BACOVA_00124 0.77 -1.0 171,806 - BACOVA_00124 0.84 -2.9 171,850 + BACOVA_00124 0.89 +0.1 171,851 - BACOVA_00124 0.89 -1.2 171,851 - BACOVA_00124 0.89 +1.0 171,852 + BACOVA_00124 0.89 -0.5 171,888 + +0.5 171,892 - -0.9 171,909 - +0.6 171,938 + -1.4 171,944 + -1.1 171,947 + -0.2 171,947 + -1.5 171,947 + -0.1 171,948 - +0.5 171,983 + +0.9 171,991 + -0.1 171,991 + -1.2 172,069 - BACOVA_00125 0.53 +0.7 172,120 - -1.8 172,167 - -1.2 172,167 - -0.4 172,188 + +1.0 172,188 + -1.9 172,189 - -0.8 172,194 - -0.7 172,201 + +1.2 172,210 + -0.1 172,210 + -0.3 172,246 + -0.2 172,247 - -1.4 172,247 - -1.4 172,260 + -1.7 172,263 + +0.7 172,263 + +0.5 172,278 + BACOVA_00126 0.11 +0.3 172,279 - BACOVA_00126 0.11 -1.6 172,347 + BACOVA_00126 0.16 +0.6 172,347 + BACOVA_00126 0.16 +3.3 172,392 - BACOVA_00126 0.19 -1.0 172,425 + BACOVA_00126 0.21 +2.5 172,426 - BACOVA_00126 0.21 -0.0 172,426 - BACOVA_00126 0.21 -1.3 172,529 - BACOVA_00126 0.28 -0.1 172,540 - BACOVA_00126 0.29 -2.1 172,542 + BACOVA_00126 0.29 +0.4 172,543 - BACOVA_00126 0.29 -1.2 172,550 - BACOVA_00126 0.29 -0.2 172,603 - BACOVA_00126 0.33 -2.0 172,605 + BACOVA_00126 0.33 -2.9 172,633 + BACOVA_00126 0.35 -0.9 172,634 - BACOVA_00126 0.35 -1.4 172,636 - BACOVA_00126 0.35 -3.0 172,654 - BACOVA_00126 0.37 -1.2 172,721 + BACOVA_00126 0.41 -1.1 172,722 - BACOVA_00126 0.41 -2.0 172,722 - BACOVA_00126 0.41 -1.3 172,725 - BACOVA_00126 0.41 -0.9 172,768 - BACOVA_00126 0.44 -0.4 172,771 - BACOVA_00126 0.45 -0.1 172,771 - BACOVA_00126 0.45 -1.1 172,777 - BACOVA_00126 0.45 -2.8 172,791 + BACOVA_00126 0.46 +0.8 172,802 - BACOVA_00126 0.47 -1.4 172,866 + BACOVA_00126 0.51 +0.5 172,867 - BACOVA_00126 0.51 -2.8 172,870 + BACOVA_00126 0.51 -0.7 172,872 + BACOVA_00126 0.51 +0.4 172,924 + BACOVA_00126 0.55 +0.6 172,924 + BACOVA_00126 0.55 +0.5 172,927 + BACOVA_00126 0.55 -1.1 172,928 - BACOVA_00126 0.55 -1.0
Or see this region's nucleotide sequence