Experiment: b-Glucan from Oat 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04952 and BACOVA_04953 are separated by 38 nucleotides BACOVA_04953 and BACOVA_04954 are separated by 44 nucleotides
BACOVA_04952: BACOVA_04952 - beta-galactosidase trimerization domain protein, at 383,735 to 385,885
_04952
BACOVA_04953: BACOVA_04953 - hypothetical protein, at 385,924 to 386,289
_04953
BACOVA_04954: BACOVA_04954 - polygalacturonase (pectinase), at 386,334 to 387,719
_04954
Position (kb) 385
386
387 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 384.959 kb on + strand, within BACOVA_04952 at 384.960 kb on - strand, within BACOVA_04952 at 384.998 kb on - strand, within BACOVA_04952 at 385.016 kb on + strand, within BACOVA_04952 at 385.017 kb on - strand, within BACOVA_04952 at 385.028 kb on - strand, within BACOVA_04952 at 385.052 kb on - strand, within BACOVA_04952 at 385.057 kb on + strand, within BACOVA_04952 at 385.108 kb on + strand, within BACOVA_04952 at 385.108 kb on + strand, within BACOVA_04952 at 385.108 kb on + strand, within BACOVA_04952 at 385.171 kb on + strand, within BACOVA_04952 at 385.172 kb on - strand, within BACOVA_04952 at 385.184 kb on - strand, within BACOVA_04952 at 385.196 kb on + strand, within BACOVA_04952 at 385.286 kb on + strand, within BACOVA_04952 at 385.329 kb on - strand, within BACOVA_04952 at 385.333 kb on - strand, within BACOVA_04952 at 385.519 kb on + strand, within BACOVA_04952 at 385.520 kb on - strand, within BACOVA_04952 at 385.567 kb on + strand, within BACOVA_04952 at 385.568 kb on - strand, within BACOVA_04952 at 385.572 kb on - strand, within BACOVA_04952 at 385.573 kb on + strand, within BACOVA_04952 at 385.586 kb on + strand, within BACOVA_04952 at 385.587 kb on - strand, within BACOVA_04952 at 385.630 kb on + strand, within BACOVA_04952 at 385.631 kb on - strand, within BACOVA_04952 at 385.637 kb on - strand, within BACOVA_04952 at 385.637 kb on - strand, within BACOVA_04952 at 385.641 kb on - strand, within BACOVA_04952 at 385.641 kb on - strand, within BACOVA_04952 at 385.644 kb on + strand, within BACOVA_04952 at 385.645 kb on - strand, within BACOVA_04952 at 385.645 kb on - strand, within BACOVA_04952 at 385.682 kb on - strand at 385.696 kb on - strand at 385.697 kb on + strand at 385.698 kb on - strand at 385.698 kb on - strand at 385.698 kb on - strand at 385.698 kb on - strand at 385.701 kb on + strand at 385.702 kb on - strand at 385.752 kb on - strand at 385.799 kb on - strand at 385.799 kb on - strand at 385.799 kb on - strand at 385.809 kb on + strand at 385.840 kb on + strand at 385.841 kb on - strand at 385.884 kb on - strand at 385.924 kb on - strand at 385.965 kb on - strand, within BACOVA_04953 at 385.983 kb on + strand, within BACOVA_04953 at 385.983 kb on + strand, within BACOVA_04953 at 385.984 kb on - strand, within BACOVA_04953 at 385.996 kb on - strand, within BACOVA_04953 at 386.034 kb on + strand, within BACOVA_04953 at 386.035 kb on - strand, within BACOVA_04953 at 386.039 kb on - strand, within BACOVA_04953 at 386.039 kb on - strand, within BACOVA_04953 at 386.039 kb on - strand, within BACOVA_04953 at 386.052 kb on - strand, within BACOVA_04953 at 386.108 kb on + strand, within BACOVA_04953 at 386.119 kb on + strand, within BACOVA_04953 at 386.120 kb on - strand, within BACOVA_04953 at 386.183 kb on - strand, within BACOVA_04953 at 386.183 kb on - strand, within BACOVA_04953 at 386.185 kb on - strand, within BACOVA_04953 at 386.205 kb on - strand, within BACOVA_04953 at 386.238 kb on - strand, within BACOVA_04953 at 386.291 kb on + strand at 386.292 kb on - strand at 386.292 kb on - strand at 386.319 kb on + strand at 386.334 kb on - strand at 386.334 kb on - strand at 386.339 kb on + strand at 386.339 kb on + strand at 386.346 kb on + strand at 386.362 kb on + strand at 386.363 kb on - strand at 386.363 kb on - strand at 386.430 kb on - strand at 386.475 kb on + strand, within BACOVA_04954 at 386.495 kb on - strand, within BACOVA_04954 at 386.498 kb on + strand, within BACOVA_04954 at 386.535 kb on - strand, within BACOVA_04954 at 386.549 kb on + strand, within BACOVA_04954 at 386.552 kb on + strand, within BACOVA_04954 at 386.559 kb on - strand, within BACOVA_04954 at 386.636 kb on + strand, within BACOVA_04954 at 386.642 kb on + strand, within BACOVA_04954 at 386.643 kb on - strand, within BACOVA_04954 at 386.643 kb on - strand, within BACOVA_04954 at 386.643 kb on - strand, within BACOVA_04954 at 386.745 kb on + strand, within BACOVA_04954 at 386.751 kb on + strand, within BACOVA_04954 at 386.762 kb on - strand, within BACOVA_04954 at 386.801 kb on + strand, within BACOVA_04954 at 386.839 kb on + strand, within BACOVA_04954 at 386.887 kb on - strand, within BACOVA_04954 at 386.889 kb on - strand, within BACOVA_04954 at 386.904 kb on - strand, within BACOVA_04954 at 386.992 kb on + strand, within BACOVA_04954 at 387.005 kb on + strand, within BACOVA_04954 at 387.043 kb on - strand, within BACOVA_04954 at 387.044 kb on + strand, within BACOVA_04954 at 387.045 kb on - strand, within BACOVA_04954 at 387.079 kb on + strand, within BACOVA_04954 at 387.080 kb on - strand, within BACOVA_04954 at 387.096 kb on - strand, within BACOVA_04954 at 387.098 kb on + strand, within BACOVA_04954 at 387.099 kb on - strand, within BACOVA_04954 at 387.129 kb on - strand, within BACOVA_04954 at 387.176 kb on - strand, within BACOVA_04954 at 387.218 kb on + strand, within BACOVA_04954 at 387.219 kb on - strand, within BACOVA_04954 at 387.245 kb on + strand, within BACOVA_04954 at 387.245 kb on + strand, within BACOVA_04954 at 387.259 kb on + strand, within BACOVA_04954 at 387.270 kb on - strand, within BACOVA_04954 at 387.274 kb on + strand, within BACOVA_04954 at 387.275 kb on - strand, within BACOVA_04954
Per-strain Table
Position Strand Gene LocusTag Fraction b-Glucan from Oat 2.5 mg/ml (C) remove 384,959 + BACOVA_04952 0.57 -2.4 384,960 - BACOVA_04952 0.57 +0.8 384,998 - BACOVA_04952 0.59 -0.4 385,016 + BACOVA_04952 0.60 -0.1 385,017 - BACOVA_04952 0.60 -0.3 385,028 - BACOVA_04952 0.60 -0.4 385,052 - BACOVA_04952 0.61 -0.9 385,057 + BACOVA_04952 0.61 -0.6 385,108 + BACOVA_04952 0.64 -0.3 385,108 + BACOVA_04952 0.64 +1.1 385,108 + BACOVA_04952 0.64 +2.0 385,171 + BACOVA_04952 0.67 +0.4 385,172 - BACOVA_04952 0.67 +0.1 385,184 - BACOVA_04952 0.67 +2.3 385,196 + BACOVA_04952 0.68 -2.1 385,286 + BACOVA_04952 0.72 -0.8 385,329 - BACOVA_04952 0.74 -0.2 385,333 - BACOVA_04952 0.74 +0.3 385,519 + BACOVA_04952 0.83 +0.1 385,520 - BACOVA_04952 0.83 +0.4 385,567 + BACOVA_04952 0.85 -0.5 385,568 - BACOVA_04952 0.85 -0.7 385,572 - BACOVA_04952 0.85 +0.2 385,573 + BACOVA_04952 0.85 +0.9 385,586 + BACOVA_04952 0.86 +0.4 385,587 - BACOVA_04952 0.86 +0.4 385,630 + BACOVA_04952 0.88 -0.0 385,631 - BACOVA_04952 0.88 -1.1 385,637 - BACOVA_04952 0.88 +0.4 385,637 - BACOVA_04952 0.88 -0.4 385,641 - BACOVA_04952 0.89 +0.6 385,641 - BACOVA_04952 0.89 -1.7 385,644 + BACOVA_04952 0.89 -0.5 385,645 - BACOVA_04952 0.89 -1.5 385,645 - BACOVA_04952 0.89 +0.9 385,682 - -0.1 385,696 - +0.5 385,697 + -1.2 385,698 - +1.2 385,698 - -0.1 385,698 - -1.2 385,698 - +0.1 385,701 + -1.3 385,702 - -0.2 385,752 - -1.9 385,799 - +0.4 385,799 - +1.1 385,799 - -2.3 385,809 + +0.2 385,840 + +0.1 385,841 - +0.6 385,884 - +0.8 385,924 - +0.4 385,965 - BACOVA_04953 0.11 +0.3 385,983 + BACOVA_04953 0.16 +2.1 385,983 + BACOVA_04953 0.16 -0.9 385,984 - BACOVA_04953 0.16 +0.9 385,996 - BACOVA_04953 0.20 -0.1 386,034 + BACOVA_04953 0.30 -1.4 386,035 - BACOVA_04953 0.30 +1.0 386,039 - BACOVA_04953 0.31 -2.8 386,039 - BACOVA_04953 0.31 -0.3 386,039 - BACOVA_04953 0.31 +0.4 386,052 - BACOVA_04953 0.35 +1.1 386,108 + BACOVA_04953 0.50 -2.1 386,119 + BACOVA_04953 0.53 -0.5 386,120 - BACOVA_04953 0.54 -0.2 386,183 - BACOVA_04953 0.71 +1.2 386,183 - BACOVA_04953 0.71 -0.5 386,185 - BACOVA_04953 0.71 -0.2 386,205 - BACOVA_04953 0.77 -0.6 386,238 - BACOVA_04953 0.86 +1.0 386,291 + +2.2 386,292 - +0.2 386,292 - -0.2 386,319 + +0.7 386,334 - +1.1 386,334 - -0.1 386,339 + +1.1 386,339 + -0.9 386,346 + -0.5 386,362 + +0.1 386,363 - -0.1 386,363 - -0.1 386,430 - +1.5 386,475 + BACOVA_04954 0.10 -2.1 386,495 - BACOVA_04954 0.12 -1.7 386,498 + BACOVA_04954 0.12 +0.6 386,535 - BACOVA_04954 0.15 -0.2 386,549 + BACOVA_04954 0.16 +1.4 386,552 + BACOVA_04954 0.16 -1.1 386,559 - BACOVA_04954 0.16 -0.8 386,636 + BACOVA_04954 0.22 -0.0 386,642 + BACOVA_04954 0.22 -1.5 386,643 - BACOVA_04954 0.22 +0.9 386,643 - BACOVA_04954 0.22 +0.2 386,643 - BACOVA_04954 0.22 -0.3 386,745 + BACOVA_04954 0.30 -0.5 386,751 + BACOVA_04954 0.30 +2.9 386,762 - BACOVA_04954 0.31 -0.7 386,801 + BACOVA_04954 0.34 -1.7 386,839 + BACOVA_04954 0.36 -0.4 386,887 - BACOVA_04954 0.40 +0.2 386,889 - BACOVA_04954 0.40 +0.8 386,904 - BACOVA_04954 0.41 -0.1 386,992 + BACOVA_04954 0.47 -1.1 387,005 + BACOVA_04954 0.48 -1.3 387,043 - BACOVA_04954 0.51 -2.0 387,044 + BACOVA_04954 0.51 +0.4 387,045 - BACOVA_04954 0.51 +0.1 387,079 + BACOVA_04954 0.54 +0.6 387,080 - BACOVA_04954 0.54 -0.5 387,096 - BACOVA_04954 0.55 -1.0 387,098 + BACOVA_04954 0.55 -0.5 387,099 - BACOVA_04954 0.55 +0.6 387,129 - BACOVA_04954 0.57 -4.1 387,176 - BACOVA_04954 0.61 -0.7 387,218 + BACOVA_04954 0.64 +0.1 387,219 - BACOVA_04954 0.64 +2.2 387,245 + BACOVA_04954 0.66 -1.1 387,245 + BACOVA_04954 0.66 +0.3 387,259 + BACOVA_04954 0.67 -0.3 387,270 - BACOVA_04954 0.68 +0.8 387,274 + BACOVA_04954 0.68 -0.8 387,275 - BACOVA_04954 0.68 -0.0
Or see this region's nucleotide sequence