Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04192

Experiment: b-Glucan from Oat 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_04191 and BACOVA_04192 are separated by 277 nucleotidesBACOVA_04192 and BACOVA_04193 are separated by 218 nucleotidesBACOVA_04193 and BACOVA_04194 are separated by 303 nucleotides BACOVA_04191: BACOVA_04191 - transcriptional regulator, GntR family, at 68,180 to 68,950 _04191 BACOVA_04192: BACOVA_04192 - YbaK/proline--tRNA ligase associated domain protein, at 69,228 to 69,791 _04192 BACOVA_04193: BACOVA_04193 - hypothetical protein, at 70,010 to 70,114 _04193 BACOVA_04194: BACOVA_04194 - efflux ABC transporter, permease protein, at 70,418 to 72,838 _04194 Position (kb) 69 70Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 68.245 kb on + strandat 68.255 kb on - strandat 68.256 kb on + strandat 68.314 kb on + strand, within BACOVA_04191at 68.314 kb on + strand, within BACOVA_04191at 68.338 kb on + strand, within BACOVA_04191at 68.339 kb on - strand, within BACOVA_04191at 68.339 kb on - strand, within BACOVA_04191at 68.356 kb on + strand, within BACOVA_04191at 68.368 kb on + strand, within BACOVA_04191at 68.369 kb on - strand, within BACOVA_04191at 68.381 kb on + strand, within BACOVA_04191at 68.409 kb on + strand, within BACOVA_04191at 68.417 kb on + strand, within BACOVA_04191at 68.420 kb on - strand, within BACOVA_04191at 68.420 kb on - strand, within BACOVA_04191at 68.450 kb on + strand, within BACOVA_04191at 68.450 kb on + strand, within BACOVA_04191at 68.456 kb on - strand, within BACOVA_04191at 68.473 kb on - strand, within BACOVA_04191at 68.482 kb on + strand, within BACOVA_04191at 68.566 kb on + strand, within BACOVA_04191at 68.567 kb on - strand, within BACOVA_04191at 68.567 kb on - strand, within BACOVA_04191at 68.580 kb on - strand, within BACOVA_04191at 68.584 kb on + strand, within BACOVA_04191at 68.675 kb on + strand, within BACOVA_04191at 68.676 kb on - strand, within BACOVA_04191at 68.676 kb on - strand, within BACOVA_04191at 68.805 kb on - strand, within BACOVA_04191at 68.871 kb on + strand, within BACOVA_04191at 68.875 kb on + strandat 68.875 kb on + strandat 68.875 kb on + strandat 68.876 kb on - strandat 68.876 kb on - strandat 68.879 kb on + strandat 68.880 kb on - strandat 68.932 kb on + strandat 68.935 kb on + strandat 68.935 kb on + strandat 68.986 kb on + strandat 69.009 kb on - strandat 69.020 kb on - strandat 69.068 kb on - strandat 69.121 kb on - strandat 69.121 kb on - strandat 69.133 kb on + strandat 69.133 kb on + strandat 69.137 kb on + strandat 69.137 kb on + strandat 69.140 kb on + strandat 69.161 kb on + strandat 69.162 kb on - strandat 69.213 kb on - strandat 69.227 kb on + strandat 69.227 kb on + strandat 69.234 kb on - strandat 69.238 kb on + strandat 69.239 kb on - strandat 69.245 kb on + strandat 69.246 kb on - strandat 69.246 kb on - strandat 69.274 kb on - strandat 69.295 kb on - strand, within BACOVA_04192at 69.322 kb on - strand, within BACOVA_04192at 69.322 kb on - strand, within BACOVA_04192at 69.403 kb on + strand, within BACOVA_04192at 69.422 kb on + strand, within BACOVA_04192at 69.423 kb on - strand, within BACOVA_04192at 69.423 kb on - strand, within BACOVA_04192at 69.452 kb on + strand, within BACOVA_04192at 69.453 kb on - strand, within BACOVA_04192at 69.478 kb on + strand, within BACOVA_04192at 69.526 kb on + strand, within BACOVA_04192at 69.527 kb on - strand, within BACOVA_04192at 69.527 kb on - strand, within BACOVA_04192at 69.527 kb on - strand, within BACOVA_04192at 69.530 kb on + strand, within BACOVA_04192at 69.531 kb on - strand, within BACOVA_04192at 69.582 kb on - strand, within BACOVA_04192at 69.607 kb on + strand, within BACOVA_04192at 69.608 kb on - strand, within BACOVA_04192at 69.614 kb on + strand, within BACOVA_04192at 69.614 kb on + strand, within BACOVA_04192at 69.615 kb on - strand, within BACOVA_04192at 69.623 kb on + strand, within BACOVA_04192at 69.637 kb on + strand, within BACOVA_04192at 69.638 kb on - strand, within BACOVA_04192at 69.654 kb on - strand, within BACOVA_04192at 69.675 kb on + strand, within BACOVA_04192at 69.675 kb on + strand, within BACOVA_04192at 69.675 kb on + strand, within BACOVA_04192at 69.676 kb on - strand, within BACOVA_04192at 69.676 kb on - strand, within BACOVA_04192at 69.676 kb on - strand, within BACOVA_04192at 69.677 kb on + strand, within BACOVA_04192at 69.678 kb on - strand, within BACOVA_04192at 69.679 kb on + strand, within BACOVA_04192at 69.679 kb on + strand, within BACOVA_04192at 69.679 kb on + strand, within BACOVA_04192at 69.679 kb on + strand, within BACOVA_04192at 69.680 kb on - strand, within BACOVA_04192at 69.697 kb on + strand, within BACOVA_04192at 69.698 kb on - strand, within BACOVA_04192at 69.698 kb on - strand, within BACOVA_04192at 69.743 kb on - strandat 69.743 kb on - strandat 69.746 kb on - strandat 69.746 kb on - strandat 69.746 kb on - strandat 69.789 kb on + strandat 69.836 kb on + strandat 69.837 kb on - strandat 69.858 kb on + strandat 69.859 kb on - strandat 69.863 kb on + strandat 69.863 kb on + strandat 69.863 kb on + strandat 69.864 kb on - strandat 70.002 kb on + strandat 70.012 kb on - strandat 70.047 kb on + strand, within BACOVA_04193at 70.116 kb on + strandat 70.116 kb on + strandat 70.116 kb on + strandat 70.131 kb on - strandat 70.199 kb on - strandat 70.210 kb on - strandat 70.214 kb on - strandat 70.293 kb on - strandat 70.293 kb on - strandat 70.317 kb on - strandat 70.321 kb on + strandat 70.326 kb on + strandat 70.327 kb on - strandat 70.329 kb on - strandat 70.341 kb on + strandat 70.341 kb on + strandat 70.406 kb on + strandat 70.455 kb on - strandat 70.511 kb on + strandat 70.517 kb on + strandat 70.517 kb on + strandat 70.517 kb on + strandat 70.517 kb on + strandat 70.521 kb on - strandat 70.521 kb on - strandat 70.523 kb on - strandat 70.523 kb on - strandat 70.565 kb on + strandat 70.579 kb on + strandat 70.579 kb on + strandat 70.604 kb on + strandat 70.605 kb on - strandat 70.605 kb on - strandat 70.606 kb on + strandat 70.606 kb on + strandat 70.688 kb on - strand, within BACOVA_04194at 70.691 kb on + strand, within BACOVA_04194at 70.692 kb on - strand, within BACOVA_04194at 70.692 kb on - strand, within BACOVA_04194at 70.733 kb on + strand, within BACOVA_04194at 70.759 kb on + strand, within BACOVA_04194

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction b-Glucan from Oat 2.5 mg/ml (C)
remove
68,245 + -0.0
68,255 - +0.6
68,256 + -0.5
68,314 + BACOVA_04191 0.17 +1.3
68,314 + BACOVA_04191 0.17 -1.4
68,338 + BACOVA_04191 0.20 +0.4
68,339 - BACOVA_04191 0.21 -1.4
68,339 - BACOVA_04191 0.21 -1.5
68,356 + BACOVA_04191 0.23 -1.5
68,368 + BACOVA_04191 0.24 +0.6
68,369 - BACOVA_04191 0.25 -0.3
68,381 + BACOVA_04191 0.26 +0.3
68,409 + BACOVA_04191 0.30 -0.5
68,417 + BACOVA_04191 0.31 +1.4
68,420 - BACOVA_04191 0.31 +0.5
68,420 - BACOVA_04191 0.31 -0.9
68,450 + BACOVA_04191 0.35 +1.4
68,450 + BACOVA_04191 0.35 +0.4
68,456 - BACOVA_04191 0.36 -0.5
68,473 - BACOVA_04191 0.38 +0.1
68,482 + BACOVA_04191 0.39 +0.1
68,566 + BACOVA_04191 0.50 -0.5
68,567 - BACOVA_04191 0.50 -0.2
68,567 - BACOVA_04191 0.50 -0.7
68,580 - BACOVA_04191 0.52 -0.8
68,584 + BACOVA_04191 0.52 +0.3
68,675 + BACOVA_04191 0.64 +0.7
68,676 - BACOVA_04191 0.64 +0.9
68,676 - BACOVA_04191 0.64 -0.6
68,805 - BACOVA_04191 0.81 +0.3
68,871 + BACOVA_04191 0.90 +0.6
68,875 + -0.3
68,875 + -1.7
68,875 + +0.1
68,876 - -0.7
68,876 - -1.4
68,879 + +1.5
68,880 - +0.3
68,932 + -0.9
68,935 + -0.6
68,935 + +0.5
68,986 + -2.1
69,009 - -0.9
69,020 - -0.1
69,068 - +0.5
69,121 - -0.6
69,121 - -0.9
69,133 + +0.8
69,133 + +0.6
69,137 + -1.8
69,137 + -0.3
69,140 + -0.3
69,161 + -0.5
69,162 - -2.7
69,213 - -3.6
69,227 + +0.2
69,227 + +0.1
69,234 - -0.5
69,238 + -0.8
69,239 - -1.7
69,245 + +2.1
69,246 - +0.6
69,246 - -0.4
69,274 - -1.3
69,295 - BACOVA_04192 0.12 -0.1
69,322 - BACOVA_04192 0.17 -0.2
69,322 - BACOVA_04192 0.17 -1.2
69,403 + BACOVA_04192 0.31 -1.7
69,422 + BACOVA_04192 0.34 +1.6
69,423 - BACOVA_04192 0.35 -1.1
69,423 - BACOVA_04192 0.35 -0.9
69,452 + BACOVA_04192 0.40 +2.0
69,453 - BACOVA_04192 0.40 -0.4
69,478 + BACOVA_04192 0.44 -0.2
69,526 + BACOVA_04192 0.53 -0.9
69,527 - BACOVA_04192 0.53 -0.7
69,527 - BACOVA_04192 0.53 -1.6
69,527 - BACOVA_04192 0.53 +0.6
69,530 + BACOVA_04192 0.54 -0.7
69,531 - BACOVA_04192 0.54 -0.3
69,582 - BACOVA_04192 0.63 -1.1
69,607 + BACOVA_04192 0.67 +1.5
69,608 - BACOVA_04192 0.67 -0.1
69,614 + BACOVA_04192 0.68 +1.1
69,614 + BACOVA_04192 0.68 -0.2
69,615 - BACOVA_04192 0.69 -0.5
69,623 + BACOVA_04192 0.70 -0.1
69,637 + BACOVA_04192 0.73 +0.2
69,638 - BACOVA_04192 0.73 +0.1
69,654 - BACOVA_04192 0.76 +0.4
69,675 + BACOVA_04192 0.79 +0.1
69,675 + BACOVA_04192 0.79 -0.2
69,675 + BACOVA_04192 0.79 +0.2
69,676 - BACOVA_04192 0.79 +0.3
69,676 - BACOVA_04192 0.79 -1.5
69,676 - BACOVA_04192 0.79 +0.1
69,677 + BACOVA_04192 0.80 -0.4
69,678 - BACOVA_04192 0.80 +0.5
69,679 + BACOVA_04192 0.80 -1.7
69,679 + BACOVA_04192 0.80 -0.7
69,679 + BACOVA_04192 0.80 +2.3
69,679 + BACOVA_04192 0.80 +0.1
69,680 - BACOVA_04192 0.80 +0.4
69,697 + BACOVA_04192 0.83 +1.9
69,698 - BACOVA_04192 0.83 -0.1
69,698 - BACOVA_04192 0.83 +0.5
69,743 - -0.6
69,743 - +0.7
69,746 - -0.4
69,746 - -0.7
69,746 - -0.7
69,789 + +0.1
69,836 + -1.0
69,837 - +1.1
69,858 + -0.5
69,859 - +0.1
69,863 + +0.2
69,863 + +1.5
69,863 + -0.9
69,864 - -0.9
70,002 + +2.3
70,012 - +0.8
70,047 + BACOVA_04193 0.35 -1.3
70,116 + -1.3
70,116 + +0.3
70,116 + -2.1
70,131 - +0.1
70,199 - +0.7
70,210 - -0.7
70,214 - +0.1
70,293 - +0.9
70,293 - +1.2
70,317 - +0.1
70,321 + +0.6
70,326 + -0.4
70,327 - +0.1
70,329 - +0.1
70,341 + +0.5
70,341 + +0.6
70,406 + +0.9
70,455 - +1.8
70,511 + +0.3
70,517 + +1.1
70,517 + +0.9
70,517 + +1.5
70,517 + -0.5
70,521 - +0.7
70,521 - +0.6
70,523 - -0.4
70,523 - +0.7
70,565 + +0.9
70,579 + -1.3
70,579 + -0.7
70,604 + +0.6
70,605 - -0.9
70,605 - -0.4
70,606 + -0.3
70,606 + -0.3
70,688 - BACOVA_04194 0.11 +1.1
70,691 + BACOVA_04194 0.11 +0.5
70,692 - BACOVA_04194 0.11 -1.3
70,692 - BACOVA_04194 0.11 -1.8
70,733 + BACOVA_04194 0.13 -0.5
70,759 + BACOVA_04194 0.14 -1.3

Or see this region's nucleotide sequence