Experiment: b-Glucan from Oat 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04025 and BACOVA_04026 are separated by 80 nucleotides BACOVA_04026 and BACOVA_04027 overlap by 64 nucleotides BACOVA_04027 and BACOVA_04028 are separated by 46 nucleotides
BACOVA_04025: BACOVA_04025 - NADH:ubiquinone oxidoreductase, F subunit, at 358,928 to 360,202
_04025
BACOVA_04026: BACOVA_04026 - hypothetical protein, at 360,283 to 360,516
_04026
BACOVA_04027: BACOVA_04027 - hypothetical protein, at 360,453 to 360,632
_04027
BACOVA_04028: BACOVA_04028 - DEAD/DEAH box helicase, at 360,679 to 362,013
_04028
Position (kb) 360
361 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 360.247 kb on + strand at 360.251 kb on + strand at 360.252 kb on - strand at 360.282 kb on - strand at 360.314 kb on - strand, within BACOVA_04026 at 360.317 kb on - strand, within BACOVA_04026 at 360.324 kb on - strand, within BACOVA_04026 at 360.355 kb on + strand, within BACOVA_04026 at 360.355 kb on + strand, within BACOVA_04026 at 360.396 kb on + strand, within BACOVA_04026 at 360.396 kb on + strand, within BACOVA_04026 at 360.396 kb on + strand, within BACOVA_04026 at 360.396 kb on + strand, within BACOVA_04026 at 360.397 kb on - strand, within BACOVA_04026 at 360.404 kb on - strand, within BACOVA_04026 at 360.438 kb on - strand, within BACOVA_04026 at 360.447 kb on + strand, within BACOVA_04026 at 360.468 kb on - strand at 360.469 kb on + strand at 360.469 kb on + strand at 360.488 kb on + strand at 360.495 kb on + strand at 360.504 kb on - strand at 360.534 kb on + strand, within BACOVA_04027 at 360.603 kb on + strand, within BACOVA_04027 at 360.603 kb on + strand, within BACOVA_04027 at 360.604 kb on - strand, within BACOVA_04027 at 360.604 kb on - strand, within BACOVA_04027 at 360.604 kb on - strand, within BACOVA_04027 at 360.605 kb on + strand, within BACOVA_04027 at 360.606 kb on - strand, within BACOVA_04027 at 360.650 kb on + strand at 360.789 kb on + strand at 360.791 kb on + strand at 360.792 kb on - strand at 360.794 kb on + strand at 360.829 kb on + strand, within BACOVA_04028 at 360.836 kb on + strand, within BACOVA_04028 at 360.842 kb on + strand, within BACOVA_04028 at 360.850 kb on - strand, within BACOVA_04028 at 360.854 kb on + strand, within BACOVA_04028 at 360.920 kb on + strand, within BACOVA_04028 at 360.920 kb on + strand, within BACOVA_04028 at 361.007 kb on + strand, within BACOVA_04028 at 361.164 kb on + strand, within BACOVA_04028 at 361.209 kb on + strand, within BACOVA_04028 at 361.258 kb on - strand, within BACOVA_04028 at 361.310 kb on + strand, within BACOVA_04028 at 361.352 kb on + strand, within BACOVA_04028 at 361.352 kb on + strand, within BACOVA_04028 at 361.354 kb on + strand, within BACOVA_04028 at 361.354 kb on + strand, within BACOVA_04028 at 361.355 kb on - strand, within BACOVA_04028 at 361.479 kb on + strand, within BACOVA_04028 at 361.480 kb on - strand, within BACOVA_04028 at 361.480 kb on - strand, within BACOVA_04028 at 361.521 kb on + strand, within BACOVA_04028 at 361.575 kb on + strand, within BACOVA_04028 at 361.593 kb on + strand, within BACOVA_04028 at 361.594 kb on - strand, within BACOVA_04028 at 361.594 kb on - strand, within BACOVA_04028 at 361.594 kb on - strand, within BACOVA_04028 at 361.604 kb on - strand, within BACOVA_04028 at 361.632 kb on + strand, within BACOVA_04028
Per-strain Table
Position Strand Gene LocusTag Fraction b-Glucan from Oat 2.5 mg/ml (C) remove 360,247 + +0.6 360,251 + -1.2 360,252 - -0.6 360,282 - -0.6 360,314 - BACOVA_04026 0.13 +0.8 360,317 - BACOVA_04026 0.15 +0.7 360,324 - BACOVA_04026 0.18 -1.2 360,355 + BACOVA_04026 0.31 +0.3 360,355 + BACOVA_04026 0.31 -0.1 360,396 + BACOVA_04026 0.48 -1.6 360,396 + BACOVA_04026 0.48 -0.4 360,396 + BACOVA_04026 0.48 -0.6 360,396 + BACOVA_04026 0.48 +0.4 360,397 - BACOVA_04026 0.49 +0.1 360,404 - BACOVA_04026 0.52 +0.1 360,438 - BACOVA_04026 0.66 +0.9 360,447 + BACOVA_04026 0.70 -0.1 360,468 - -0.5 360,469 + +0.0 360,469 + +0.2 360,488 + +0.5 360,495 + -0.3 360,504 - +0.4 360,534 + BACOVA_04027 0.45 -1.3 360,603 + BACOVA_04027 0.83 -0.9 360,603 + BACOVA_04027 0.83 -3.4 360,604 - BACOVA_04027 0.84 -1.6 360,604 - BACOVA_04027 0.84 +0.0 360,604 - BACOVA_04027 0.84 +0.2 360,605 + BACOVA_04027 0.84 -0.7 360,606 - BACOVA_04027 0.85 +0.1 360,650 + +0.2 360,789 + +1.3 360,791 + -2.5 360,792 - -1.1 360,794 + -0.4 360,829 + BACOVA_04028 0.11 -1.6 360,836 + BACOVA_04028 0.12 +1.8 360,842 + BACOVA_04028 0.12 -0.1 360,850 - BACOVA_04028 0.13 -0.1 360,854 + BACOVA_04028 0.13 +0.4 360,920 + BACOVA_04028 0.18 +0.7 360,920 + BACOVA_04028 0.18 +0.4 361,007 + BACOVA_04028 0.25 -0.1 361,164 + BACOVA_04028 0.36 +0.4 361,209 + BACOVA_04028 0.40 +1.5 361,258 - BACOVA_04028 0.43 -0.6 361,310 + BACOVA_04028 0.47 -1.6 361,352 + BACOVA_04028 0.50 -0.9 361,352 + BACOVA_04028 0.50 -0.4 361,354 + BACOVA_04028 0.51 -0.2 361,354 + BACOVA_04028 0.51 +1.4 361,355 - BACOVA_04028 0.51 -0.1 361,479 + BACOVA_04028 0.60 -0.2 361,480 - BACOVA_04028 0.60 +0.4 361,480 - BACOVA_04028 0.60 -0.3 361,521 + BACOVA_04028 0.63 -1.9 361,575 + BACOVA_04028 0.67 -3.1 361,593 + BACOVA_04028 0.68 -0.5 361,594 - BACOVA_04028 0.69 -1.0 361,594 - BACOVA_04028 0.69 +1.8 361,594 - BACOVA_04028 0.69 -0.4 361,604 - BACOVA_04028 0.69 -1.1 361,632 + BACOVA_04028 0.71 -0.1
Or see this region's nucleotide sequence