Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03965

Experiment: b-Glucan from Oat 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03964 and BACOVA_03965 are separated by 19 nucleotidesBACOVA_03965 and BACOVA_03966 are separated by 4 nucleotidesBACOVA_03966 and BACOVA_03967 are separated by 88 nucleotidesBACOVA_03967 and BACOVA_03968 are separated by 20 nucleotides BACOVA_03964: BACOVA_03964 - efflux transporter, RND family, MFP subunit, at 293,338 to 294,558 _03964 BACOVA_03965: BACOVA_03965 - outer membrane efflux protein, at 294,578 to 295,975 _03965 BACOVA_03966: BACOVA_03966 - hypothetical protein, at 295,980 to 296,105 _03966 BACOVA_03967: BACOVA_03967 - hypothetical protein, at 296,194 to 296,430 _03967 BACOVA_03968: BACOVA_03968 - bacterial cytochrome ubiquinol oxidase, at 296,451 to 297,998 _03968 Position (kb) 294 295 296Strain fitness (log2 ratio) -2 -1 0 1 2 3at 293.683 kb on - strand, within BACOVA_03964at 293.685 kb on - strand, within BACOVA_03964at 293.698 kb on - strand, within BACOVA_03964at 293.746 kb on + strand, within BACOVA_03964at 293.747 kb on - strand, within BACOVA_03964at 293.760 kb on + strand, within BACOVA_03964at 293.764 kb on + strand, within BACOVA_03964at 293.769 kb on + strand, within BACOVA_03964at 293.769 kb on + strand, within BACOVA_03964at 293.770 kb on - strand, within BACOVA_03964at 293.828 kb on - strand, within BACOVA_03964at 293.828 kb on - strand, within BACOVA_03964at 293.840 kb on - strand, within BACOVA_03964at 293.887 kb on + strand, within BACOVA_03964at 293.887 kb on + strand, within BACOVA_03964at 293.888 kb on - strand, within BACOVA_03964at 293.901 kb on + strand, within BACOVA_03964at 293.923 kb on + strand, within BACOVA_03964at 294.026 kb on - strand, within BACOVA_03964at 294.048 kb on + strand, within BACOVA_03964at 294.051 kb on + strand, within BACOVA_03964at 294.052 kb on - strand, within BACOVA_03964at 294.056 kb on + strand, within BACOVA_03964at 294.057 kb on - strand, within BACOVA_03964at 294.099 kb on + strand, within BACOVA_03964at 294.109 kb on - strand, within BACOVA_03964at 294.126 kb on - strand, within BACOVA_03964at 294.132 kb on - strand, within BACOVA_03964at 294.132 kb on - strand, within BACOVA_03964at 294.160 kb on - strand, within BACOVA_03964at 294.189 kb on + strand, within BACOVA_03964at 294.197 kb on + strand, within BACOVA_03964at 294.218 kb on + strand, within BACOVA_03964at 294.239 kb on + strand, within BACOVA_03964at 294.239 kb on + strand, within BACOVA_03964at 294.239 kb on + strand, within BACOVA_03964at 294.314 kb on - strand, within BACOVA_03964at 294.326 kb on + strand, within BACOVA_03964at 294.326 kb on + strand, within BACOVA_03964at 294.327 kb on - strand, within BACOVA_03964at 294.376 kb on + strand, within BACOVA_03964at 294.376 kb on + strand, within BACOVA_03964at 294.564 kb on + strandat 294.565 kb on - strandat 294.567 kb on + strandat 294.579 kb on + strandat 294.581 kb on + strandat 294.582 kb on - strandat 294.604 kb on - strandat 294.622 kb on + strandat 294.637 kb on + strandat 294.639 kb on + strandat 294.640 kb on - strandat 294.672 kb on - strandat 294.701 kb on + strandat 294.747 kb on + strand, within BACOVA_03965at 294.747 kb on + strand, within BACOVA_03965at 294.809 kb on - strand, within BACOVA_03965at 294.809 kb on - strand, within BACOVA_03965at 294.873 kb on - strand, within BACOVA_03965at 294.885 kb on + strand, within BACOVA_03965at 294.963 kb on + strand, within BACOVA_03965at 295.063 kb on - strand, within BACOVA_03965at 295.103 kb on + strand, within BACOVA_03965at 295.104 kb on - strand, within BACOVA_03965at 295.108 kb on + strand, within BACOVA_03965at 295.109 kb on - strand, within BACOVA_03965at 295.117 kb on + strand, within BACOVA_03965at 295.150 kb on + strand, within BACOVA_03965at 295.155 kb on + strand, within BACOVA_03965at 295.172 kb on - strand, within BACOVA_03965at 295.187 kb on + strand, within BACOVA_03965at 295.215 kb on + strand, within BACOVA_03965at 295.216 kb on - strand, within BACOVA_03965at 295.216 kb on - strand, within BACOVA_03965at 295.216 kb on - strand, within BACOVA_03965at 295.265 kb on + strand, within BACOVA_03965at 295.420 kb on + strand, within BACOVA_03965at 295.452 kb on + strand, within BACOVA_03965at 295.452 kb on + strand, within BACOVA_03965at 295.467 kb on + strand, within BACOVA_03965at 295.467 kb on + strand, within BACOVA_03965at 295.511 kb on + strand, within BACOVA_03965at 295.571 kb on - strand, within BACOVA_03965at 295.579 kb on + strand, within BACOVA_03965at 295.579 kb on + strand, within BACOVA_03965at 295.579 kb on + strand, within BACOVA_03965at 295.581 kb on + strand, within BACOVA_03965at 295.581 kb on + strand, within BACOVA_03965at 295.608 kb on + strand, within BACOVA_03965at 295.613 kb on - strand, within BACOVA_03965at 295.613 kb on - strand, within BACOVA_03965at 295.621 kb on - strand, within BACOVA_03965at 295.621 kb on - strand, within BACOVA_03965at 295.630 kb on + strand, within BACOVA_03965at 295.634 kb on - strand, within BACOVA_03965at 295.744 kb on + strand, within BACOVA_03965at 295.744 kb on + strand, within BACOVA_03965at 295.876 kb on + strandat 295.907 kb on + strandat 295.921 kb on + strandat 295.922 kb on - strandat 295.958 kb on + strandat 295.959 kb on - strandat 295.969 kb on + strandat 295.975 kb on + strandat 295.976 kb on - strandat 295.976 kb on - strandat 295.989 kb on + strandat 296.008 kb on + strand, within BACOVA_03966at 296.008 kb on + strand, within BACOVA_03966at 296.008 kb on + strand, within BACOVA_03966at 296.008 kb on + strand, within BACOVA_03966at 296.009 kb on - strand, within BACOVA_03966at 296.015 kb on + strand, within BACOVA_03966at 296.017 kb on + strand, within BACOVA_03966at 296.049 kb on - strand, within BACOVA_03966at 296.144 kb on - strandat 296.193 kb on + strandat 296.202 kb on + strandat 296.212 kb on - strandat 296.212 kb on - strandat 296.245 kb on - strand, within BACOVA_03967at 296.248 kb on - strand, within BACOVA_03967at 296.298 kb on + strand, within BACOVA_03967at 296.298 kb on + strand, within BACOVA_03967at 296.313 kb on + strand, within BACOVA_03967at 296.314 kb on - strand, within BACOVA_03967at 296.374 kb on + strand, within BACOVA_03967at 296.374 kb on + strand, within BACOVA_03967at 296.374 kb on + strand, within BACOVA_03967at 296.375 kb on - strand, within BACOVA_03967at 296.393 kb on + strand, within BACOVA_03967at 296.445 kb on - strandat 296.517 kb on + strandat 296.583 kb on + strandat 296.584 kb on - strandat 296.587 kb on - strandat 296.587 kb on - strandat 296.588 kb on + strandat 296.648 kb on - strand, within BACOVA_03968at 296.715 kb on + strand, within BACOVA_03968at 296.735 kb on + strand, within BACOVA_03968at 296.735 kb on + strand, within BACOVA_03968at 296.756 kb on + strand, within BACOVA_03968at 296.765 kb on + strand, within BACOVA_03968at 296.781 kb on - strand, within BACOVA_03968at 296.828 kb on - strand, within BACOVA_03968at 296.831 kb on + strand, within BACOVA_03968at 296.852 kb on + strand, within BACOVA_03968at 296.961 kb on - strand, within BACOVA_03968

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Per-strain Table

Position Strand Gene LocusTag Fraction b-Glucan from Oat 2.5 mg/ml (C)
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293,683 - BACOVA_03964 0.28 -1.4
293,685 - BACOVA_03964 0.28 +1.6
293,698 - BACOVA_03964 0.29 +1.1
293,746 + BACOVA_03964 0.33 -0.0
293,747 - BACOVA_03964 0.33 -1.0
293,760 + BACOVA_03964 0.35 +2.0
293,764 + BACOVA_03964 0.35 +1.4
293,769 + BACOVA_03964 0.35 +0.3
293,769 + BACOVA_03964 0.35 +1.0
293,770 - BACOVA_03964 0.35 -0.5
293,828 - BACOVA_03964 0.40 +0.4
293,828 - BACOVA_03964 0.40 -1.0
293,840 - BACOVA_03964 0.41 -0.4
293,887 + BACOVA_03964 0.45 -0.8
293,887 + BACOVA_03964 0.45 +1.9
293,888 - BACOVA_03964 0.45 +0.4
293,901 + BACOVA_03964 0.46 -0.5
293,923 + BACOVA_03964 0.48 -0.3
294,026 - BACOVA_03964 0.56 -1.7
294,048 + BACOVA_03964 0.58 -1.1
294,051 + BACOVA_03964 0.58 +0.7
294,052 - BACOVA_03964 0.58 +1.1
294,056 + BACOVA_03964 0.59 -2.6
294,057 - BACOVA_03964 0.59 -2.0
294,099 + BACOVA_03964 0.62 +0.6
294,109 - BACOVA_03964 0.63 -0.6
294,126 - BACOVA_03964 0.65 -0.3
294,132 - BACOVA_03964 0.65 +1.8
294,132 - BACOVA_03964 0.65 -2.0
294,160 - BACOVA_03964 0.67 +0.5
294,189 + BACOVA_03964 0.70 -0.9
294,197 + BACOVA_03964 0.70 -0.1
294,218 + BACOVA_03964 0.72 +0.8
294,239 + BACOVA_03964 0.74 +0.2
294,239 + BACOVA_03964 0.74 +1.5
294,239 + BACOVA_03964 0.74 +1.0
294,314 - BACOVA_03964 0.80 -0.9
294,326 + BACOVA_03964 0.81 -0.3
294,326 + BACOVA_03964 0.81 -2.2
294,327 - BACOVA_03964 0.81 -0.9
294,376 + BACOVA_03964 0.85 +1.5
294,376 + BACOVA_03964 0.85 +0.7
294,564 + +0.4
294,565 - +2.4
294,567 + +0.6
294,579 + -0.0
294,581 + -0.2
294,582 - -0.0
294,604 - +1.4
294,622 + -0.3
294,637 + +1.5
294,639 + +0.2
294,640 - -0.6
294,672 - -2.6
294,701 + -0.4
294,747 + BACOVA_03965 0.12 -0.1
294,747 + BACOVA_03965 0.12 +0.1
294,809 - BACOVA_03965 0.17 -0.9
294,809 - BACOVA_03965 0.17 -0.9
294,873 - BACOVA_03965 0.21 +0.4
294,885 + BACOVA_03965 0.22 -0.0
294,963 + BACOVA_03965 0.28 -1.2
295,063 - BACOVA_03965 0.35 -0.4
295,103 + BACOVA_03965 0.38 -0.8
295,104 - BACOVA_03965 0.38 -1.4
295,108 + BACOVA_03965 0.38 -0.5
295,109 - BACOVA_03965 0.38 +3.3
295,117 + BACOVA_03965 0.39 -0.2
295,150 + BACOVA_03965 0.41 -1.1
295,155 + BACOVA_03965 0.41 +1.0
295,172 - BACOVA_03965 0.42 -0.6
295,187 + BACOVA_03965 0.44 -0.4
295,215 + BACOVA_03965 0.46 -1.6
295,216 - BACOVA_03965 0.46 +0.3
295,216 - BACOVA_03965 0.46 -1.5
295,216 - BACOVA_03965 0.46 -0.6
295,265 + BACOVA_03965 0.49 -0.0
295,420 + BACOVA_03965 0.60 -0.0
295,452 + BACOVA_03965 0.63 -1.3
295,452 + BACOVA_03965 0.63 +1.0
295,467 + BACOVA_03965 0.64 -0.6
295,467 + BACOVA_03965 0.64 -0.0
295,511 + BACOVA_03965 0.67 -0.9
295,571 - BACOVA_03965 0.71 -0.7
295,579 + BACOVA_03965 0.72 -0.7
295,579 + BACOVA_03965 0.72 -0.0
295,579 + BACOVA_03965 0.72 -0.6
295,581 + BACOVA_03965 0.72 -1.6
295,581 + BACOVA_03965 0.72 +1.1
295,608 + BACOVA_03965 0.74 +0.6
295,613 - BACOVA_03965 0.74 -1.1
295,613 - BACOVA_03965 0.74 -0.0
295,621 - BACOVA_03965 0.75 -1.0
295,621 - BACOVA_03965 0.75 -1.6
295,630 + BACOVA_03965 0.75 -1.2
295,634 - BACOVA_03965 0.76 -1.6
295,744 + BACOVA_03965 0.83 +0.3
295,744 + BACOVA_03965 0.83 +1.7
295,876 + +1.5
295,907 + +3.0
295,921 + -0.0
295,922 - -1.6
295,958 + -0.5
295,959 - -1.0
295,969 + +3.3
295,975 + -0.9
295,976 - -1.2
295,976 - -0.0
295,989 + +0.5
296,008 + BACOVA_03966 0.22 +1.0
296,008 + BACOVA_03966 0.22 -1.0
296,008 + BACOVA_03966 0.22 -0.0
296,008 + BACOVA_03966 0.22 -1.0
296,009 - BACOVA_03966 0.23 -1.2
296,015 + BACOVA_03966 0.28 +1.5
296,017 + BACOVA_03966 0.29 +0.5
296,049 - BACOVA_03966 0.55 +0.5
296,144 - -1.6
296,193 + -0.0
296,202 + -0.0
296,212 - +1.0
296,212 - +0.4
296,245 - BACOVA_03967 0.22 -0.5
296,248 - BACOVA_03967 0.23 -0.5
296,298 + BACOVA_03967 0.44 +1.3
296,298 + BACOVA_03967 0.44 +1.0
296,313 + BACOVA_03967 0.50 -0.0
296,314 - BACOVA_03967 0.51 +2.5
296,374 + BACOVA_03967 0.76 +0.2
296,374 + BACOVA_03967 0.76 -1.0
296,374 + BACOVA_03967 0.76 -0.6
296,375 - BACOVA_03967 0.76 +1.0
296,393 + BACOVA_03967 0.84 -0.6
296,445 - -1.5
296,517 + -0.4
296,583 + -1.0
296,584 - +0.5
296,587 - -1.2
296,587 - +2.4
296,588 + +0.6
296,648 - BACOVA_03968 0.13 +0.1
296,715 + BACOVA_03968 0.17 -0.6
296,735 + BACOVA_03968 0.18 -0.2
296,735 + BACOVA_03968 0.18 +0.2
296,756 + BACOVA_03968 0.20 -0.9
296,765 + BACOVA_03968 0.20 -1.9
296,781 - BACOVA_03968 0.21 -0.7
296,828 - BACOVA_03968 0.24 -0.6
296,831 + BACOVA_03968 0.25 -0.9
296,852 + BACOVA_03968 0.26 +0.5
296,961 - BACOVA_03968 0.33 -0.6

Or see this region's nucleotide sequence