Experiment: b-Glucan from Oat 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03417 and BACOVA_03419 are separated by 96 nucleotides BACOVA_03419 and BACOVA_03420 are separated by 200 nucleotides BACOVA_03420 and BACOVA_03421 are separated by 70 nucleotides
BACOVA_03417: BACOVA_03417 - glycosyl hydrolase, family 43, at 128,613 to 130,217
_03417
BACOVA_03419: BACOVA_03419 - glycosyl hydrolase family 3 C-terminal domain protein, at 130,314 to 132,899
_03419
BACOVA_03420: BACOVA_03420 - hypothetical protein, at 133,100 to 133,261
_03420
BACOVA_03421: BACOVA_03421 - glycosyl hydrolase, family 43, at 133,332 to 135,059
_03421
Position (kb) 130
131
132
133 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 129.403 kb on + strand, within BACOVA_03417 at 129.427 kb on - strand, within BACOVA_03417 at 129.486 kb on - strand, within BACOVA_03417 at 129.486 kb on - strand, within BACOVA_03417 at 129.560 kb on + strand, within BACOVA_03417 at 129.561 kb on - strand, within BACOVA_03417 at 129.561 kb on - strand, within BACOVA_03417 at 129.711 kb on - strand, within BACOVA_03417 at 129.747 kb on - strand, within BACOVA_03417 at 129.747 kb on - strand, within BACOVA_03417 at 129.752 kb on - strand, within BACOVA_03417 at 129.830 kb on + strand, within BACOVA_03417 at 129.851 kb on + strand, within BACOVA_03417 at 129.851 kb on + strand, within BACOVA_03417 at 129.852 kb on - strand, within BACOVA_03417 at 129.872 kb on + strand, within BACOVA_03417 at 129.873 kb on - strand, within BACOVA_03417 at 129.908 kb on - strand, within BACOVA_03417 at 129.963 kb on - strand, within BACOVA_03417 at 129.963 kb on - strand, within BACOVA_03417 at 129.964 kb on + strand, within BACOVA_03417 at 129.988 kb on - strand, within BACOVA_03417 at 130.011 kb on - strand, within BACOVA_03417 at 130.041 kb on + strand, within BACOVA_03417 at 130.042 kb on - strand, within BACOVA_03417 at 130.044 kb on - strand, within BACOVA_03417 at 130.067 kb on - strand at 130.124 kb on + strand at 130.135 kb on + strand at 130.139 kb on + strand at 130.139 kb on + strand at 130.139 kb on + strand at 130.171 kb on + strand at 130.172 kb on - strand at 130.191 kb on + strand at 130.192 kb on - strand at 130.216 kb on - strand at 130.226 kb on + strand at 130.226 kb on + strand at 130.231 kb on - strand at 130.256 kb on + strand at 130.299 kb on - strand at 130.301 kb on + strand at 130.306 kb on - strand at 130.306 kb on - strand at 130.373 kb on + strand at 130.373 kb on + strand at 130.468 kb on + strand at 130.469 kb on - strand at 130.509 kb on - strand at 130.515 kb on + strand at 130.516 kb on - strand at 130.516 kb on - strand at 130.605 kb on - strand, within BACOVA_03419 at 130.616 kb on - strand, within BACOVA_03419 at 130.621 kb on - strand, within BACOVA_03419 at 130.734 kb on - strand, within BACOVA_03419 at 130.736 kb on - strand, within BACOVA_03419 at 130.773 kb on + strand, within BACOVA_03419 at 130.852 kb on - strand, within BACOVA_03419 at 130.852 kb on - strand, within BACOVA_03419 at 130.856 kb on + strand, within BACOVA_03419 at 130.857 kb on - strand, within BACOVA_03419 at 130.917 kb on - strand, within BACOVA_03419 at 130.936 kb on + strand, within BACOVA_03419 at 130.937 kb on - strand, within BACOVA_03419 at 130.937 kb on - strand, within BACOVA_03419 at 130.962 kb on + strand, within BACOVA_03419 at 130.962 kb on + strand, within BACOVA_03419 at 131.022 kb on + strand, within BACOVA_03419 at 131.022 kb on + strand, within BACOVA_03419 at 131.023 kb on - strand, within BACOVA_03419 at 131.077 kb on + strand, within BACOVA_03419 at 131.110 kb on + strand, within BACOVA_03419 at 131.111 kb on - strand, within BACOVA_03419 at 131.111 kb on - strand, within BACOVA_03419 at 131.236 kb on - strand, within BACOVA_03419 at 131.236 kb on - strand, within BACOVA_03419 at 131.257 kb on + strand, within BACOVA_03419 at 131.291 kb on + strand, within BACOVA_03419 at 131.384 kb on + strand, within BACOVA_03419 at 131.384 kb on + strand, within BACOVA_03419 at 131.384 kb on + strand, within BACOVA_03419 at 131.387 kb on + strand, within BACOVA_03419 at 131.472 kb on - strand, within BACOVA_03419 at 131.472 kb on - strand, within BACOVA_03419 at 131.492 kb on + strand, within BACOVA_03419 at 131.493 kb on - strand, within BACOVA_03419 at 131.502 kb on - strand, within BACOVA_03419 at 131.502 kb on - strand, within BACOVA_03419 at 131.535 kb on + strand, within BACOVA_03419 at 131.535 kb on + strand, within BACOVA_03419 at 131.536 kb on - strand, within BACOVA_03419 at 131.555 kb on + strand, within BACOVA_03419 at 131.556 kb on - strand, within BACOVA_03419 at 131.609 kb on - strand, within BACOVA_03419 at 131.611 kb on - strand, within BACOVA_03419 at 131.669 kb on + strand, within BACOVA_03419 at 131.669 kb on + strand, within BACOVA_03419 at 131.670 kb on - strand, within BACOVA_03419 at 131.675 kb on - strand, within BACOVA_03419 at 131.681 kb on + strand, within BACOVA_03419 at 131.682 kb on - strand, within BACOVA_03419 at 131.703 kb on + strand, within BACOVA_03419 at 131.712 kb on - strand, within BACOVA_03419 at 131.813 kb on + strand, within BACOVA_03419 at 131.906 kb on + strand, within BACOVA_03419 at 131.907 kb on - strand, within BACOVA_03419 at 131.907 kb on - strand, within BACOVA_03419 at 131.912 kb on - strand, within BACOVA_03419 at 131.946 kb on - strand, within BACOVA_03419 at 131.946 kb on - strand, within BACOVA_03419 at 131.966 kb on + strand, within BACOVA_03419 at 131.967 kb on - strand, within BACOVA_03419 at 131.995 kb on - strand, within BACOVA_03419 at 131.995 kb on - strand, within BACOVA_03419 at 131.999 kb on + strand, within BACOVA_03419 at 132.000 kb on - strand, within BACOVA_03419 at 132.036 kb on - strand, within BACOVA_03419 at 132.097 kb on + strand, within BACOVA_03419 at 132.097 kb on + strand, within BACOVA_03419 at 132.166 kb on + strand, within BACOVA_03419 at 132.182 kb on + strand, within BACOVA_03419 at 132.183 kb on - strand, within BACOVA_03419 at 132.279 kb on + strand, within BACOVA_03419 at 132.366 kb on - strand, within BACOVA_03419 at 132.366 kb on - strand, within BACOVA_03419 at 132.396 kb on + strand, within BACOVA_03419 at 132.397 kb on - strand, within BACOVA_03419 at 132.398 kb on + strand, within BACOVA_03419 at 132.398 kb on + strand, within BACOVA_03419 at 132.429 kb on + strand, within BACOVA_03419 at 132.466 kb on - strand, within BACOVA_03419 at 132.483 kb on - strand, within BACOVA_03419 at 132.483 kb on - strand, within BACOVA_03419 at 132.483 kb on - strand, within BACOVA_03419 at 132.487 kb on - strand, within BACOVA_03419 at 132.492 kb on + strand, within BACOVA_03419 at 132.493 kb on - strand, within BACOVA_03419 at 132.494 kb on + strand, within BACOVA_03419 at 132.538 kb on - strand, within BACOVA_03419 at 132.601 kb on + strand, within BACOVA_03419 at 132.611 kb on + strand, within BACOVA_03419 at 132.623 kb on + strand, within BACOVA_03419 at 132.624 kb on - strand, within BACOVA_03419 at 132.701 kb on + strand at 132.702 kb on - strand at 132.702 kb on - strand at 132.729 kb on - strand at 132.755 kb on - strand at 132.759 kb on - strand at 132.796 kb on + strand at 132.832 kb on - strand at 132.832 kb on - strand at 132.844 kb on - strand at 132.844 kb on - strand at 132.866 kb on + strand at 132.867 kb on - strand at 132.933 kb on - strand at 132.948 kb on - strand at 132.951 kb on + strand at 133.010 kb on + strand at 133.011 kb on - strand at 133.033 kb on - strand at 133.033 kb on - strand at 133.054 kb on + strand at 133.055 kb on - strand at 133.128 kb on + strand, within BACOVA_03420 at 133.128 kb on + strand, within BACOVA_03420 at 133.129 kb on - strand, within BACOVA_03420 at 133.129 kb on - strand, within BACOVA_03420 at 133.180 kb on - strand, within BACOVA_03420 at 133.200 kb on + strand, within BACOVA_03420 at 133.200 kb on + strand, within BACOVA_03420 at 133.200 kb on + strand, within BACOVA_03420 at 133.220 kb on - strand, within BACOVA_03420 at 133.228 kb on + strand, within BACOVA_03420 at 133.230 kb on + strand, within BACOVA_03420 at 133.230 kb on + strand, within BACOVA_03420 at 133.231 kb on - strand, within BACOVA_03420 at 133.231 kb on - strand, within BACOVA_03420 at 133.231 kb on - strand, within BACOVA_03420 at 133.251 kb on + strand at 133.255 kb on + strand at 133.256 kb on - strand at 133.256 kb on - strand at 133.256 kb on - strand at 133.256 kb on - strand at 133.256 kb on - strand at 133.257 kb on + strand at 133.262 kb on + strand at 133.263 kb on - strand at 133.263 kb on - strand at 133.292 kb on - strand at 133.309 kb on + strand at 133.332 kb on - strand at 133.385 kb on - strand at 133.388 kb on + strand at 133.388 kb on + strand at 133.392 kb on - strand at 133.406 kb on + strand at 133.427 kb on + strand at 133.463 kb on + strand at 133.484 kb on + strand at 133.485 kb on - strand at 133.489 kb on - strand at 133.521 kb on + strand, within BACOVA_03421 at 133.522 kb on - strand, within BACOVA_03421 at 133.522 kb on - strand, within BACOVA_03421 at 133.545 kb on + strand, within BACOVA_03421 at 133.574 kb on + strand, within BACOVA_03421 at 133.581 kb on + strand, within BACOVA_03421 at 133.582 kb on - strand, within BACOVA_03421 at 133.585 kb on - strand, within BACOVA_03421 at 133.625 kb on + strand, within BACOVA_03421 at 133.693 kb on + strand, within BACOVA_03421 at 133.726 kb on + strand, within BACOVA_03421 at 133.726 kb on + strand, within BACOVA_03421 at 133.727 kb on - strand, within BACOVA_03421 at 133.727 kb on - strand, within BACOVA_03421 at 133.727 kb on - strand, within BACOVA_03421 at 133.727 kb on - strand, within BACOVA_03421 at 133.727 kb on - strand, within BACOVA_03421 at 133.727 kb on - strand, within BACOVA_03421 at 133.746 kb on + strand, within BACOVA_03421 at 133.746 kb on + strand, within BACOVA_03421 at 133.747 kb on - strand, within BACOVA_03421 at 133.747 kb on - strand, within BACOVA_03421 at 133.747 kb on - strand, within BACOVA_03421 at 133.747 kb on - strand, within BACOVA_03421 at 133.747 kb on - strand, within BACOVA_03421 at 133.749 kb on - strand, within BACOVA_03421 at 133.764 kb on - strand, within BACOVA_03421 at 133.771 kb on - strand, within BACOVA_03421 at 133.772 kb on + strand, within BACOVA_03421 at 133.778 kb on - strand, within BACOVA_03421
Per-strain Table
Position Strand Gene LocusTag Fraction b-Glucan from Oat 2.5 mg/ml (C) remove 129,403 + BACOVA_03417 0.49 -0.9 129,427 - BACOVA_03417 0.51 +4.1 129,486 - BACOVA_03417 0.54 -0.4 129,486 - BACOVA_03417 0.54 +0.2 129,560 + BACOVA_03417 0.59 -3.1 129,561 - BACOVA_03417 0.59 -0.2 129,561 - BACOVA_03417 0.59 +1.8 129,711 - BACOVA_03417 0.68 -0.0 129,747 - BACOVA_03417 0.71 +0.2 129,747 - BACOVA_03417 0.71 +1.9 129,752 - BACOVA_03417 0.71 +0.6 129,830 + BACOVA_03417 0.76 -0.9 129,851 + BACOVA_03417 0.77 -0.0 129,851 + BACOVA_03417 0.77 -0.3 129,852 - BACOVA_03417 0.77 +0.4 129,872 + BACOVA_03417 0.78 -1.5 129,873 - BACOVA_03417 0.79 +0.3 129,908 - BACOVA_03417 0.81 -0.7 129,963 - BACOVA_03417 0.84 +0.8 129,963 - BACOVA_03417 0.84 +2.5 129,964 + BACOVA_03417 0.84 -0.3 129,988 - BACOVA_03417 0.86 -0.7 130,011 - BACOVA_03417 0.87 -0.0 130,041 + BACOVA_03417 0.89 -0.1 130,042 - BACOVA_03417 0.89 +1.2 130,044 - BACOVA_03417 0.89 +0.5 130,067 - +0.6 130,124 + -0.8 130,135 + -2.1 130,139 + +1.4 130,139 + +0.1 130,139 + +0.6 130,171 + +1.2 130,172 - +1.2 130,191 + -1.1 130,192 - +0.8 130,216 - +0.4 130,226 + -0.5 130,226 + -0.8 130,231 - -0.6 130,256 + +0.7 130,299 - -0.1 130,301 + -0.1 130,306 - -0.9 130,306 - -0.1 130,373 + +0.2 130,373 + +0.7 130,468 + -0.6 130,469 - +1.0 130,509 - +0.0 130,515 + -1.0 130,516 - +0.8 130,516 - -0.3 130,605 - BACOVA_03419 0.11 +0.1 130,616 - BACOVA_03419 0.12 -0.9 130,621 - BACOVA_03419 0.12 +0.9 130,734 - BACOVA_03419 0.16 +0.2 130,736 - BACOVA_03419 0.16 -0.1 130,773 + BACOVA_03419 0.18 +1.5 130,852 - BACOVA_03419 0.21 +1.2 130,852 - BACOVA_03419 0.21 +0.3 130,856 + BACOVA_03419 0.21 -1.7 130,857 - BACOVA_03419 0.21 -0.3 130,917 - BACOVA_03419 0.23 +0.4 130,936 + BACOVA_03419 0.24 +0.8 130,937 - BACOVA_03419 0.24 +0.4 130,937 - BACOVA_03419 0.24 -0.8 130,962 + BACOVA_03419 0.25 -1.2 130,962 + BACOVA_03419 0.25 -0.1 131,022 + BACOVA_03419 0.27 +0.0 131,022 + BACOVA_03419 0.27 -0.2 131,023 - BACOVA_03419 0.27 -0.2 131,077 + BACOVA_03419 0.30 +0.8 131,110 + BACOVA_03419 0.31 +0.2 131,111 - BACOVA_03419 0.31 -1.3 131,111 - BACOVA_03419 0.31 +0.9 131,236 - BACOVA_03419 0.36 -0.2 131,236 - BACOVA_03419 0.36 -0.7 131,257 + BACOVA_03419 0.36 +1.1 131,291 + BACOVA_03419 0.38 +2.8 131,384 + BACOVA_03419 0.41 +1.1 131,384 + BACOVA_03419 0.41 -0.1 131,384 + BACOVA_03419 0.41 +1.5 131,387 + BACOVA_03419 0.41 -0.7 131,472 - BACOVA_03419 0.45 +0.0 131,472 - BACOVA_03419 0.45 +0.1 131,492 + BACOVA_03419 0.46 -0.6 131,493 - BACOVA_03419 0.46 -0.2 131,502 - BACOVA_03419 0.46 -0.5 131,502 - BACOVA_03419 0.46 -0.8 131,535 + BACOVA_03419 0.47 +0.1 131,535 + BACOVA_03419 0.47 +0.1 131,536 - BACOVA_03419 0.47 +0.6 131,555 + BACOVA_03419 0.48 +0.8 131,556 - BACOVA_03419 0.48 -0.0 131,609 - BACOVA_03419 0.50 +0.5 131,611 - BACOVA_03419 0.50 -0.4 131,669 + BACOVA_03419 0.52 +0.5 131,669 + BACOVA_03419 0.52 +1.8 131,670 - BACOVA_03419 0.52 -1.8 131,675 - BACOVA_03419 0.53 +2.0 131,681 + BACOVA_03419 0.53 -0.6 131,682 - BACOVA_03419 0.53 -0.1 131,703 + BACOVA_03419 0.54 -3.1 131,712 - BACOVA_03419 0.54 -0.5 131,813 + BACOVA_03419 0.58 +0.8 131,906 + BACOVA_03419 0.62 -1.0 131,907 - BACOVA_03419 0.62 +0.2 131,907 - BACOVA_03419 0.62 -0.8 131,912 - BACOVA_03419 0.62 +0.4 131,946 - BACOVA_03419 0.63 -0.2 131,946 - BACOVA_03419 0.63 -1.3 131,966 + BACOVA_03419 0.64 -0.9 131,967 - BACOVA_03419 0.64 +0.4 131,995 - BACOVA_03419 0.65 +0.4 131,995 - BACOVA_03419 0.65 -0.3 131,999 + BACOVA_03419 0.65 +0.0 132,000 - BACOVA_03419 0.65 -0.0 132,036 - BACOVA_03419 0.67 -0.7 132,097 + BACOVA_03419 0.69 -1.2 132,097 + BACOVA_03419 0.69 -0.5 132,166 + BACOVA_03419 0.72 -1.1 132,182 + BACOVA_03419 0.72 +0.3 132,183 - BACOVA_03419 0.72 -1.8 132,279 + BACOVA_03419 0.76 +1.0 132,366 - BACOVA_03419 0.79 -0.8 132,366 - BACOVA_03419 0.79 +0.1 132,396 + BACOVA_03419 0.81 -1.1 132,397 - BACOVA_03419 0.81 -1.0 132,398 + BACOVA_03419 0.81 +0.2 132,398 + BACOVA_03419 0.81 -0.2 132,429 + BACOVA_03419 0.82 -1.1 132,466 - BACOVA_03419 0.83 +0.7 132,483 - BACOVA_03419 0.84 +0.2 132,483 - BACOVA_03419 0.84 +0.6 132,483 - BACOVA_03419 0.84 +1.3 132,487 - BACOVA_03419 0.84 +1.7 132,492 + BACOVA_03419 0.84 -2.2 132,493 - BACOVA_03419 0.84 -0.6 132,494 + BACOVA_03419 0.84 -1.1 132,538 - BACOVA_03419 0.86 +0.7 132,601 + BACOVA_03419 0.88 +0.5 132,611 + BACOVA_03419 0.89 -0.1 132,623 + BACOVA_03419 0.89 -0.5 132,624 - BACOVA_03419 0.89 -1.0 132,701 + -0.1 132,702 - +1.8 132,702 - +0.2 132,729 - +0.1 132,755 - -0.6 132,759 - -0.4 132,796 + -0.2 132,832 - -0.8 132,832 - +1.1 132,844 - -0.3 132,844 - +0.2 132,866 + +0.1 132,867 - -0.0 132,933 - +0.6 132,948 - -0.6 132,951 + +1.2 133,010 + +2.1 133,011 - +0.2 133,033 - +0.0 133,033 - +2.2 133,054 + +1.6 133,055 - +0.2 133,128 + BACOVA_03420 0.17 +2.2 133,128 + BACOVA_03420 0.17 +1.4 133,129 - BACOVA_03420 0.18 -1.8 133,129 - BACOVA_03420 0.18 -1.0 133,180 - BACOVA_03420 0.49 +0.7 133,200 + BACOVA_03420 0.62 +2.1 133,200 + BACOVA_03420 0.62 +2.3 133,200 + BACOVA_03420 0.62 -0.8 133,220 - BACOVA_03420 0.74 +0.9 133,228 + BACOVA_03420 0.79 +2.2 133,230 + BACOVA_03420 0.80 +3.0 133,230 + BACOVA_03420 0.80 +1.8 133,231 - BACOVA_03420 0.81 -0.2 133,231 - BACOVA_03420 0.81 -0.6 133,231 - BACOVA_03420 0.81 -0.3 133,251 + +1.1 133,255 + +1.8 133,256 - +0.6 133,256 - +0.7 133,256 - -0.1 133,256 - +0.2 133,256 - -0.8 133,257 + +2.2 133,262 + +3.2 133,263 - -0.9 133,263 - -0.6 133,292 - -0.1 133,309 + +1.8 133,332 - -0.6 133,385 - +0.2 133,388 + +0.3 133,388 + +1.1 133,392 - -1.0 133,406 + +0.0 133,427 + -0.6 133,463 + -1.3 133,484 + +0.0 133,485 - +0.2 133,489 - -0.4 133,521 + BACOVA_03421 0.11 +1.0 133,522 - BACOVA_03421 0.11 +0.2 133,522 - BACOVA_03421 0.11 +0.1 133,545 + BACOVA_03421 0.12 +0.9 133,574 + BACOVA_03421 0.14 +0.1 133,581 + BACOVA_03421 0.14 +0.9 133,582 - BACOVA_03421 0.14 -0.9 133,585 - BACOVA_03421 0.15 +0.5 133,625 + BACOVA_03421 0.17 +1.7 133,693 + BACOVA_03421 0.21 +1.2 133,726 + BACOVA_03421 0.23 -0.1 133,726 + BACOVA_03421 0.23 +1.2 133,727 - BACOVA_03421 0.23 +0.4 133,727 - BACOVA_03421 0.23 +0.0 133,727 - BACOVA_03421 0.23 -0.8 133,727 - BACOVA_03421 0.23 +0.2 133,727 - BACOVA_03421 0.23 +1.2 133,727 - BACOVA_03421 0.23 -1.1 133,746 + BACOVA_03421 0.24 +0.1 133,746 + BACOVA_03421 0.24 -1.3 133,747 - BACOVA_03421 0.24 +1.7 133,747 - BACOVA_03421 0.24 -0.5 133,747 - BACOVA_03421 0.24 -0.2 133,747 - BACOVA_03421 0.24 -0.3 133,747 - BACOVA_03421 0.24 +0.2 133,749 - BACOVA_03421 0.24 +2.6 133,764 - BACOVA_03421 0.25 +0.7 133,771 - BACOVA_03421 0.25 +1.2 133,772 + BACOVA_03421 0.25 -0.4 133,778 - BACOVA_03421 0.26 +1.5
Or see this region's nucleotide sequence