Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03161

Experiment: b-Glucan from Oat 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03159 and BACOVA_03160 are separated by 489 nucleotidesBACOVA_03160 and BACOVA_03161 overlap by 28 nucleotidesBACOVA_03161 and BACOVA_03162 are separated by 81 nucleotidesBACOVA_03162 and BACOVA_03163 are separated by 74 nucleotides BACOVA_03159: BACOVA_03159 - hypothetical protein, at 251,296 to 252,351 _03159 BACOVA_03160: BACOVA_03160 - hypothetical protein, at 252,841 to 252,966 _03160 BACOVA_03161: BACOVA_03161 - hypothetical protein, at 252,939 to 253,610 _03161 BACOVA_03162: BACOVA_03162 - transcriptional regulator, LuxR family, at 253,692 to 254,471 _03162 BACOVA_03163: BACOVA_03163 - haloacid dehalogenase-like hydrolase, at 254,546 to 255,238 _03163 Position (kb) 252 253 254Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 251.964 kb on + strand, within BACOVA_03159at 251.986 kb on + strand, within BACOVA_03159at 251.987 kb on - strand, within BACOVA_03159at 252.037 kb on + strand, within BACOVA_03159at 252.037 kb on + strand, within BACOVA_03159at 252.038 kb on - strand, within BACOVA_03159at 252.038 kb on - strand, within BACOVA_03159at 252.038 kb on - strand, within BACOVA_03159at 252.100 kb on + strand, within BACOVA_03159at 252.101 kb on - strand, within BACOVA_03159at 252.121 kb on + strand, within BACOVA_03159at 252.124 kb on - strand, within BACOVA_03159at 252.157 kb on + strand, within BACOVA_03159at 252.158 kb on - strand, within BACOVA_03159at 252.178 kb on - strand, within BACOVA_03159at 252.234 kb on + strand, within BACOVA_03159at 252.263 kb on + strandat 252.263 kb on + strandat 252.327 kb on + strandat 252.328 kb on - strandat 252.328 kb on - strandat 252.331 kb on + strandat 252.331 kb on + strandat 252.332 kb on - strandat 252.332 kb on - strandat 252.332 kb on - strandat 252.334 kb on - strandat 252.352 kb on + strandat 252.352 kb on + strandat 252.382 kb on - strandat 252.382 kb on - strandat 252.382 kb on - strandat 252.384 kb on - strandat 252.393 kb on + strandat 252.404 kb on + strandat 252.405 kb on - strandat 252.408 kb on + strandat 252.514 kb on + strandat 252.515 kb on - strandat 252.515 kb on - strandat 252.521 kb on - strandat 252.554 kb on - strandat 252.580 kb on + strandat 252.581 kb on - strandat 252.585 kb on + strandat 252.586 kb on - strandat 252.616 kb on + strandat 252.617 kb on - strandat 252.619 kb on - strandat 252.638 kb on - strandat 252.638 kb on - strandat 252.686 kb on + strandat 252.719 kb on + strandat 252.722 kb on + strandat 252.722 kb on + strandat 252.773 kb on + strandat 252.774 kb on - strandat 252.792 kb on - strandat 252.834 kb on - strandat 252.835 kb on + strandat 252.835 kb on + strandat 252.844 kb on + strandat 252.863 kb on - strand, within BACOVA_03160at 252.873 kb on - strand, within BACOVA_03160at 252.874 kb on + strand, within BACOVA_03160at 252.874 kb on + strand, within BACOVA_03160at 252.875 kb on - strand, within BACOVA_03160at 252.877 kb on + strand, within BACOVA_03160at 252.877 kb on + strand, within BACOVA_03160at 252.878 kb on - strand, within BACOVA_03160at 252.887 kb on - strand, within BACOVA_03160at 252.889 kb on - strand, within BACOVA_03160at 252.891 kb on + strand, within BACOVA_03160at 252.893 kb on + strand, within BACOVA_03160at 252.894 kb on - strand, within BACOVA_03160at 252.894 kb on - strand, within BACOVA_03160at 252.909 kb on + strand, within BACOVA_03160at 252.913 kb on + strand, within BACOVA_03160at 252.917 kb on + strand, within BACOVA_03160at 252.948 kb on + strandat 252.949 kb on - strandat 253.017 kb on - strand, within BACOVA_03161at 253.017 kb on - strand, within BACOVA_03161at 253.053 kb on + strand, within BACOVA_03161at 253.076 kb on + strand, within BACOVA_03161at 253.077 kb on - strand, within BACOVA_03161at 253.077 kb on - strand, within BACOVA_03161at 253.077 kb on - strand, within BACOVA_03161at 253.103 kb on + strand, within BACOVA_03161at 253.106 kb on + strand, within BACOVA_03161at 253.115 kb on + strand, within BACOVA_03161at 253.141 kb on - strand, within BACOVA_03161at 253.168 kb on - strand, within BACOVA_03161at 253.173 kb on + strand, within BACOVA_03161at 253.175 kb on + strand, within BACOVA_03161at 253.176 kb on - strand, within BACOVA_03161at 253.203 kb on + strand, within BACOVA_03161at 253.204 kb on - strand, within BACOVA_03161at 253.229 kb on + strand, within BACOVA_03161at 253.242 kb on + strand, within BACOVA_03161at 253.265 kb on - strand, within BACOVA_03161at 253.282 kb on - strand, within BACOVA_03161at 253.311 kb on + strand, within BACOVA_03161at 253.312 kb on - strand, within BACOVA_03161at 253.339 kb on + strand, within BACOVA_03161at 253.339 kb on + strand, within BACOVA_03161at 253.339 kb on + strand, within BACOVA_03161at 253.340 kb on - strand, within BACOVA_03161at 253.382 kb on - strand, within BACOVA_03161at 253.382 kb on - strand, within BACOVA_03161at 253.382 kb on - strand, within BACOVA_03161at 253.391 kb on - strand, within BACOVA_03161at 253.393 kb on + strand, within BACOVA_03161at 253.393 kb on + strand, within BACOVA_03161at 253.393 kb on + strand, within BACOVA_03161at 253.394 kb on - strand, within BACOVA_03161at 253.489 kb on - strand, within BACOVA_03161at 253.526 kb on + strand, within BACOVA_03161at 253.526 kb on + strand, within BACOVA_03161at 253.545 kb on - strandat 253.566 kb on - strandat 253.572 kb on + strandat 253.642 kb on + strandat 253.702 kb on + strandat 253.703 kb on - strandat 253.753 kb on + strandat 253.754 kb on - strandat 253.895 kb on - strand, within BACOVA_03162at 253.931 kb on + strand, within BACOVA_03162at 253.931 kb on + strand, within BACOVA_03162at 253.946 kb on + strand, within BACOVA_03162at 253.959 kb on - strand, within BACOVA_03162at 254.069 kb on - strand, within BACOVA_03162at 254.072 kb on + strand, within BACOVA_03162at 254.072 kb on + strand, within BACOVA_03162at 254.095 kb on - strand, within BACOVA_03162at 254.100 kb on + strand, within BACOVA_03162at 254.100 kb on + strand, within BACOVA_03162at 254.108 kb on + strand, within BACOVA_03162at 254.132 kb on + strand, within BACOVA_03162at 254.149 kb on + strand, within BACOVA_03162at 254.149 kb on + strand, within BACOVA_03162at 254.149 kb on + strand, within BACOVA_03162at 254.170 kb on - strand, within BACOVA_03162at 254.170 kb on - strand, within BACOVA_03162at 254.170 kb on - strand, within BACOVA_03162at 254.171 kb on + strand, within BACOVA_03162at 254.172 kb on - strand, within BACOVA_03162at 254.172 kb on - strand, within BACOVA_03162at 254.216 kb on + strand, within BACOVA_03162at 254.225 kb on + strand, within BACOVA_03162at 254.225 kb on + strand, within BACOVA_03162at 254.226 kb on - strand, within BACOVA_03162at 254.313 kb on - strand, within BACOVA_03162at 254.314 kb on + strand, within BACOVA_03162at 254.315 kb on - strand, within BACOVA_03162at 254.318 kb on + strand, within BACOVA_03162at 254.319 kb on - strand, within BACOVA_03162at 254.326 kb on + strand, within BACOVA_03162at 254.327 kb on - strand, within BACOVA_03162at 254.355 kb on + strand, within BACOVA_03162at 254.357 kb on + strand, within BACOVA_03162at 254.358 kb on - strand, within BACOVA_03162at 254.360 kb on + strand, within BACOVA_03162at 254.361 kb on - strand, within BACOVA_03162at 254.361 kb on - strand, within BACOVA_03162at 254.417 kb on + strandat 254.478 kb on - strandat 254.478 kb on - strandat 254.478 kb on - strandat 254.489 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction b-Glucan from Oat 2.5 mg/ml (C)
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251,964 + BACOVA_03159 0.63 -1.5
251,986 + BACOVA_03159 0.65 -0.4
251,987 - BACOVA_03159 0.65 -1.0
252,037 + BACOVA_03159 0.70 +1.7
252,037 + BACOVA_03159 0.70 +0.2
252,038 - BACOVA_03159 0.70 +0.7
252,038 - BACOVA_03159 0.70 +1.2
252,038 - BACOVA_03159 0.70 +0.1
252,100 + BACOVA_03159 0.76 -3.8
252,101 - BACOVA_03159 0.76 +1.2
252,121 + BACOVA_03159 0.78 -0.1
252,124 - BACOVA_03159 0.78 +0.0
252,157 + BACOVA_03159 0.82 -0.0
252,158 - BACOVA_03159 0.82 -1.3
252,178 - BACOVA_03159 0.84 -0.4
252,234 + BACOVA_03159 0.89 +1.5
252,263 + -0.6
252,263 + -0.7
252,327 + +1.2
252,328 - -0.1
252,328 - +0.2
252,331 + +0.3
252,331 + +0.5
252,332 - +0.3
252,332 - +0.9
252,332 - +0.2
252,334 - +0.6
252,352 + -0.1
252,352 + -0.4
252,382 - -0.7
252,382 - +0.6
252,382 - +0.9
252,384 - +1.7
252,393 + -0.7
252,404 + +0.9
252,405 - -0.3
252,408 + -0.4
252,514 + +1.7
252,515 - +0.3
252,515 - -0.4
252,521 - +0.1
252,554 - -2.3
252,580 + +0.3
252,581 - -0.0
252,585 + +0.5
252,586 - +0.6
252,616 + +0.2
252,617 - +0.6
252,619 - +0.5
252,638 - +0.7
252,638 - +0.3
252,686 + -0.9
252,719 + -0.3
252,722 + +0.6
252,722 + +0.6
252,773 + -1.0
252,774 - -0.1
252,792 - +0.9
252,834 - +0.6
252,835 + +1.0
252,835 + +0.2
252,844 + -0.5
252,863 - BACOVA_03160 0.17 -1.0
252,873 - BACOVA_03160 0.25 +1.5
252,874 + BACOVA_03160 0.26 -0.5
252,874 + BACOVA_03160 0.26 -1.3
252,875 - BACOVA_03160 0.27 -0.6
252,877 + BACOVA_03160 0.29 +0.1
252,877 + BACOVA_03160 0.29 -1.2
252,878 - BACOVA_03160 0.29 -0.6
252,887 - BACOVA_03160 0.37 -1.5
252,889 - BACOVA_03160 0.38 -2.0
252,891 + BACOVA_03160 0.40 -0.1
252,893 + BACOVA_03160 0.41 +0.2
252,894 - BACOVA_03160 0.42 -1.4
252,894 - BACOVA_03160 0.42 -2.1
252,909 + BACOVA_03160 0.54 -1.0
252,913 + BACOVA_03160 0.57 -0.3
252,917 + BACOVA_03160 0.60 +1.2
252,948 + -0.6
252,949 - +2.1
253,017 - BACOVA_03161 0.12 +1.2
253,017 - BACOVA_03161 0.12 -1.2
253,053 + BACOVA_03161 0.17 +1.0
253,076 + BACOVA_03161 0.20 +0.2
253,077 - BACOVA_03161 0.21 -2.7
253,077 - BACOVA_03161 0.21 +0.8
253,077 - BACOVA_03161 0.21 +0.1
253,103 + BACOVA_03161 0.24 +0.7
253,106 + BACOVA_03161 0.25 -0.4
253,115 + BACOVA_03161 0.26 +1.2
253,141 - BACOVA_03161 0.30 +0.3
253,168 - BACOVA_03161 0.34 +0.7
253,173 + BACOVA_03161 0.35 -0.1
253,175 + BACOVA_03161 0.35 +0.2
253,176 - BACOVA_03161 0.35 -0.8
253,203 + BACOVA_03161 0.39 -0.4
253,204 - BACOVA_03161 0.39 -0.6
253,229 + BACOVA_03161 0.43 +1.3
253,242 + BACOVA_03161 0.45 +1.0
253,265 - BACOVA_03161 0.49 -0.7
253,282 - BACOVA_03161 0.51 -0.5
253,311 + BACOVA_03161 0.55 +2.4
253,312 - BACOVA_03161 0.56 +2.7
253,339 + BACOVA_03161 0.60 -0.1
253,339 + BACOVA_03161 0.60 -0.4
253,339 + BACOVA_03161 0.60 -0.5
253,340 - BACOVA_03161 0.60 -1.3
253,382 - BACOVA_03161 0.66 +0.8
253,382 - BACOVA_03161 0.66 -0.2
253,382 - BACOVA_03161 0.66 +0.2
253,391 - BACOVA_03161 0.67 +0.5
253,393 + BACOVA_03161 0.68 -0.1
253,393 + BACOVA_03161 0.68 -3.1
253,393 + BACOVA_03161 0.68 -0.6
253,394 - BACOVA_03161 0.68 +0.2
253,489 - BACOVA_03161 0.82 +1.7
253,526 + BACOVA_03161 0.87 -1.4
253,526 + BACOVA_03161 0.87 -0.0
253,545 - -0.2
253,566 - -1.2
253,572 + -0.3
253,642 + -0.4
253,702 + -0.6
253,703 - -0.7
253,753 + +0.1
253,754 - +1.9
253,895 - BACOVA_03162 0.26 -0.4
253,931 + BACOVA_03162 0.31 -1.0
253,931 + BACOVA_03162 0.31 -0.5
253,946 + BACOVA_03162 0.33 +1.5
253,959 - BACOVA_03162 0.34 -1.6
254,069 - BACOVA_03162 0.48 +0.1
254,072 + BACOVA_03162 0.49 +0.6
254,072 + BACOVA_03162 0.49 -0.3
254,095 - BACOVA_03162 0.52 -0.1
254,100 + BACOVA_03162 0.52 -3.5
254,100 + BACOVA_03162 0.52 -0.9
254,108 + BACOVA_03162 0.53 -1.4
254,132 + BACOVA_03162 0.56 -0.2
254,149 + BACOVA_03162 0.59 -1.1
254,149 + BACOVA_03162 0.59 +1.9
254,149 + BACOVA_03162 0.59 -1.1
254,170 - BACOVA_03162 0.61 -1.1
254,170 - BACOVA_03162 0.61 +0.2
254,170 - BACOVA_03162 0.61 +0.8
254,171 + BACOVA_03162 0.61 -1.9
254,172 - BACOVA_03162 0.62 -1.1
254,172 - BACOVA_03162 0.62 -0.3
254,216 + BACOVA_03162 0.67 -0.0
254,225 + BACOVA_03162 0.68 +1.5
254,225 + BACOVA_03162 0.68 -0.0
254,226 - BACOVA_03162 0.68 +0.2
254,313 - BACOVA_03162 0.80 -2.9
254,314 + BACOVA_03162 0.80 +0.9
254,315 - BACOVA_03162 0.80 -0.1
254,318 + BACOVA_03162 0.80 +0.3
254,319 - BACOVA_03162 0.80 +0.5
254,326 + BACOVA_03162 0.81 +0.7
254,327 - BACOVA_03162 0.81 -0.1
254,355 + BACOVA_03162 0.85 +1.0
254,357 + BACOVA_03162 0.85 +0.6
254,358 - BACOVA_03162 0.85 +3.5
254,360 + BACOVA_03162 0.86 +1.2
254,361 - BACOVA_03162 0.86 +0.1
254,361 - BACOVA_03162 0.86 -1.0
254,417 + -0.2
254,478 - +1.5
254,478 - +1.6
254,478 - +0.6
254,489 - -0.6

Or see this region's nucleotide sequence